MELO3C004792 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004792
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTumor protein p73
Locationchr12 : 10244396 .. 10244913 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCACGGGATCTCTTTTGATGATAAAATACATCATTTAGTGAGTAGTGTCATTCCTCCACCTTCACAGCTCAAACTACCCAAGAACCGAAGGAGCAACCTAGGTGGTAAAGAAATTTTCTTGGTTAAGGCGATGGTTACTACTCTCGAAGAGAAGATAAATGAGTATAAATATGAAAGCGATAGCAGCAAAAGTGATCGTCATCGAAAGAGACCTTTGAAGAAAGCGAAGGTATCAGATGATGATCCCGATGGAAGAGGTTCAAGTGCTTTGGGAAAGAAATGTTCCACCACTGGTTTGCACATTTTCCTTTCTTAAAAAAAATATTTTAATAAGTTCATCTTCTTCACAAATGACTTATTAATTGCTTACTTCCGCAGTCACCTTTGAACAATCATCTTGAAGACCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGAAGTTGATTCAGCCATTGAGGAAGTTGGTACCTCGAAGACTCCCGTCTCTAAACCAGCCGAATAG

mRNA sequence

ATGAGGCACGGGATCTCTTTTGATGATAAAATACATCATTTAGTGAGTAGTGTCATTCCTCCACCTTCACAGCTCAAACTACCCAAGAACCGAAGGAGCAACCTAGGTGGTAAAGAAATTTTCTTGGTTAAGGCGATGGTTACTACTCTCGAAGAGAAGATAAATGAGTATAAATATGAAAGCGATAGCAGCAAAAGTGATCGTCATCGAAAGAGACCTTTGAAGAAAGCGAAGGTATCAGATGATGATCCCGATGGAAGAGGTTCAAGTGCTTTGGGAAAGAAATGTTCCACCACTGACCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGAAGTTGATTCAGCCATTGAGGAAGTTGGTACCTCGAAGACTCCCGTCTCTAAACCAGCCGAATAG

Coding sequence (CDS)

ATGAGGCACGGGATCTCTTTTGATGATAAAATACATCATTTAGTGAGTAGTGTCATTCCTCCACCTTCACAGCTCAAACTACCCAAGAACCGAAGGAGCAACCTAGGTGGTAAAGAAATTTTCTTGGTTAAGGCGATGGTTACTACTCTCGAAGAGAAGATAAATGAGTATAAATATGAAAGCGATAGCAGCAAAAGTGATCGTCATCGAAAGAGACCTTTGAAGAAAGCGAAGGTATCAGATGATGATCCCGATGGAAGAGGTTCAAGTGCTTTGGGAAAGAAATGTTCCACCACTGACCTTATAGAGCTAGGCAGCGATGAATCTTTGACGGGACCTCATGAAGTTGATTCAGCCATTGAGGAAGTTGGTACCTCGAAGACTCCCGTCTCTAAACCAGCCGAATAG

Protein sequence

MRHGISFDDKIHHLVSSVIPPPSQLKLPKNRRSNLGGKEIFLVKAMVTTLEEKINEYKYESDSSKSDRHRKRPLKKAKVSDDDPDGRGSSALGKKCSTTDLIELGSDESLTGPHEVDSAIEEVGTSKTPVSKPAE*
Homology
[Close]
BLAST of MELO3C004792 vs. TrEMBL
Match: E5GCB9_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.6e-37
Identity = 89/134 (66.42%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 2   RHGISFDDKIHHLVSSVIPPPSQLKLPKNRRSNLGGKEIFLVKAMVTTLEEKINEYKYES 61
           +H   F+D  HHLVSS I PPSQ +LPKNR SNLGGKEI LV+AM   LEE++ E+K ES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHRKRPLKKAKVSDDDPDGRGSSALGKKCSTTDLIELGSDESLTGPHEVDSAIE 121
           DSSKSDRH KRPLKKAKVS D PD               LIE  SDESLTGPH VDSA E
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPDW-----------FARLIEPDSDESLTGPHVVDSAFE 419

Query: 122 EVGTSKTPVSKPAE 136
           EVGTSKTPV+KPAE
Sbjct: 420 EVGTSKTPVNKPAE 422

[Close]
BLAST of MELO3C004792 vs. NCBI nr
Match: gi|307136292|gb|ADN34118.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 162.2 bits (409), Expect = 6.6e-37
Identity = 89/134 (66.42%), Postives = 97/134 (72.39%), Query Frame = 1 

Query: 2   RHGISFDDKIHHLVSSVIPPPSQLKLPKNRRSNLGGKEIFLVKAMVTTLEEKINEYKYES 61
           +H   F+D  HHLVSS I PPSQ +LPKNR SNLGGKEI LV+AM   LEE++ E+K ES
Sbjct: 300 KHMTYFEDNRHHLVSSAISPPSQPRLPKNRGSNLGGKEIGLVEAMAPNLEEEVKEHKDES 359

Query: 62  DSSKSDRHRKRPLKKAKVSDDDPDGRGSSALGKKCSTTDLIELGSDESLTGPHEVDSAIE 121
           DSSKSDRH KRPLKKAKVS D PD               LIE  SDESLTGPH VDSA E
Sbjct: 360 DSSKSDRHWKRPLKKAKVSGDHPDW-----------FARLIEPDSDESLTGPHVVDSAFE 419

Query: 122 EVGTSKTPVSKPAE 136
           EVGTSKTPV+KPAE
Sbjct: 420 EVGTSKTPVNKPAE 422

The following BLAST results are available for this feature:
BLAST of MELO3C004792 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GCB9_CUCME4.6e-3766.42Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C004792 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136292|gb|ADN34118.1|6.6e-3766.42hypothetical protein [Cucumis melo subsp. melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU65907melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004792T1MELO3C004792T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU65907MU65907transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004792Watermelon (97103) v2mewmbB143
MELO3C004792Wax gourdmewgoB174
MELO3C004792Cucumber (Gy14) v1cgymeB365
MELO3C004792Cucurbita maxima (Rimu)cmameB148
MELO3C004792Cucurbita maxima (Rimu)cmameB194
MELO3C004792Cucurbita moschata (Rifu)cmomeB138
MELO3C004792Cucurbita moschata (Rifu)cmomeB181
MELO3C004792Wild cucumber (PI 183967)cpimeB011
MELO3C004792Cucumber (Chinese Long) v2cumeB015
MELO3C004792Watermelon (Charleston Gray)mewcgB141
MELO3C004792Watermelon (97103) v1mewmB159
MELO3C004792Cucurbita pepo (Zucchini)cpemeB745
MELO3C004792Bottle gourd (USVL1VR-Ls)lsimeB244
MELO3C004792Cucumber (Gy14) v2cgybmeB010
MELO3C004792Cucumber (Chinese Long) v3cucmeB010