MELO3C004734 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004734
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative retrotransposon protein
Location	chr12 : 11403703 .. 11403863 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATGATTGGATCCTTACTTTATTTGACCGCTAGGAGACCCGATATCATGTTTAGTGTATGTTTTTGTGCTAGATTTCAATCTTTTCCCAAAGAATCAGATTTGCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGA

mRNA sequence

GTATGATTGGATCCTTACTTTATTTGACCGCTAGGAGACCCGATATCATGTTTAGTGTATGTTTTTGTGCTAGATTTCAATCTTTTCCCAAAGAATCAGATTTGCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGA

Coding sequence (CDS)

GTATGATTGGATCCTTACTTTATTTGACCGCTAGGAGACCCGATATCATGTTTAGTGTATGTTTTTGTGCTAGATTTCAATCTTTTCCCAAAGAATCAGATTTGCATGCCGTTAAAAGGATACTTAAATATTTGCTTGGAACTATTGATGTTGGATTATGA

Protein sequence

MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL*

Homology

[Close]

BLAST of MELO3C004734 vs. TrEMBL
Match: A5AIH9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000314 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.3e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L A+KRILKYL GT+D+GL
Sbjct: 120 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESHLSAIKRILKYLKGTMDIGL 171

[Close]

BLAST of MELO3C004734 vs. TrEMBL
Match: A5B714_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002844 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Sbjct: 252 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESHLSAVKRILRYLKGTMDIGL 303

[Close]

BLAST of MELO3C004734 vs. TrEMBL
Match: A5AYU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008902 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.6e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Sbjct: 241 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESPLSAVKRILRYLKGTMDIGL 292

[Close]

BLAST of MELO3C004734 vs. TrEMBL
Match: A0A151SMU8_CAJCA (Copia protein OS=Cajanus cajan GN=KK1_002337 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-15
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYL A RPDIMFSVC CAR+QS+PKESDL AVKRI++YLLGT ++GL
Sbjct: 185 MIGSLLYLFASRPDIMFSVCLCARYQSYPKESDLSAVKRIVRYLLGTTNLGL 236

[Close]

BLAST of MELO3C004734 vs. TrEMBL
Match: A5AMA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036606 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-14
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+S+C CARFQS PKES L AVKRIL+YL GT+D+GL
Sbjct: 72  MIGSLLYLTASRPDIMYSICLCARFQSCPKESHLSAVKRILRYLKGTMDMGL 123

[Close]

BLAST of MELO3C004734 vs. NCBI nr
Match: gi|147773380|emb|CAN71353.1| (hypothetical protein VITISV_000314 [Vitis vinifera])

HSP 1 Score: 88.2 bits (217), Expect = 4.7e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L A+KRILKYL GT+D+GL
Sbjct: 120 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESHLSAIKRILKYLKGTMDIGL 171

[Close]

BLAST of MELO3C004734 vs. NCBI nr
Match: gi|147838602|emb|CAN65058.1| (hypothetical protein VITISV_008902 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 8.0e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Sbjct: 241 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESPLSAVKRILRYLKGTMDIGL 292

[Close]

BLAST of MELO3C004734 vs. NCBI nr
Match: gi|147790611|emb|CAN63212.1| (hypothetical protein VITISV_002844 [Vitis vinifera])

HSP 1 Score: 87.4 bits (215), Expect = 8.0e-15
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIM+SVC CARFQS PKES L AVKRIL+YL GT+D+GL
Sbjct: 252 MIGSLLYLTASRPDIMYSVCLCARFQSCPKESHLSAVKRILRYLKGTMDIGL 303

[Close]

BLAST of MELO3C004734 vs. NCBI nr
Match: gi|1012344913|gb|KYP56105.1| (Copia protein [Cajanus cajan])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-14
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYL A RPDIMFSVC CAR+QS+PKESDL AVKRI++YLLGT ++GL
Sbjct: 185 MIGSLLYLFASRPDIMFSVCLCARYQSYPKESDLSAVKRIVRYLLGTTNLGL 236

[Close]

BLAST of MELO3C004734 vs. NCBI nr
Match: gi|1021512342|ref|XP_016199523.1| (PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Arachis ipaensis])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-14
Identity = 41/52 (78.85%), Postives = 47/52 (90.38%), Query Frame = 1


Query: 1   MIGSLLYLTARRPDIMFSVCFCARFQSFPKESDLHAVKRILKYLLGTIDVGL 53
           MIGSLLYLTA RPDIMFSVC CAR+Q+ PKES L AVKRI+KYL+GT++VGL
Sbjct: 185 MIGSLLYLTASRPDIMFSVCICARYQANPKESHLSAVKRIMKYLIGTLNVGL 236

The following BLAST results are available for this feature:

BLAST of MELO3C004734 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AIH9_VITVI	3.3e-15	80.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000314 PE=4 SV=1	[more]
A5B714_VITVI	5.6e-15	80.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002844 PE=4 SV=1	[more]
A5AYU5_VITVI	5.6e-15	80.77	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008902 PE=4 SV=1	[more]
A0A151SMU8_CAJCA	7.3e-15	78.85	Copia protein OS=Cajanus cajan GN=KK1_002337 PE=4 SV=1	[more]
A5AMA4_VITVI	1.2e-14	78.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036606 PE=4 SV=1	[more]

BLAST of MELO3C004734 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147773380\|emb\|CAN71353.1\|	4.7e-15	80.77	hypothetical protein VITISV_000314 [Vitis vinifera]	[more]
gi\|147838602\|emb\|CAN65058.1\|	8.0e-15	80.77	hypothetical protein VITISV_008902 [Vitis vinifera]	[more]
gi\|147790611\|emb\|CAN63212.1\|	8.0e-15	80.77	hypothetical protein VITISV_002844 [Vitis vinifera]	[more]
gi\|1012344913\|gb\|KYP56105.1\|	1.0e-14	78.85	Copia protein [Cajanus cajan]	[more]
gi\|1021512342\|ref\|XP_016199523.1\|	1.4e-14	78.85	PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Arachis ipaensi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004734T1	MELO3C004734T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..52 score: 1.6
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 1..52 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004734	Wax gourd	mewgoB174
MELO3C004734	Cucumber (Gy14) v1	cgymeB365
MELO3C004734	Cucurbita maxima (Rimu)	cmameB196
MELO3C004734	Cucurbita maxima (Rimu)	cmameB204
MELO3C004734	Wild cucumber (PI 183967)	cpimeB011
MELO3C004734	Cucumber (Chinese Long) v2	cumeB015
MELO3C004734	Watermelon (Charleston Gray)	mewcgB141
MELO3C004734	Bottle gourd (USVL1VR-Ls)	lsimeB244
MELO3C004734	Cucumber (Gy14) v2	cgybmeB010
MELO3C004734	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004734	Watermelon (97103) v2	mewmbB143