MELO3C004727.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004727.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein RTF2 homolog
Location	chr12 : 11588983 .. 11590924 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCACCTGTGACCAAGCACCTACCAACGTGACTTCGCCCGTGACCACTGGAGGACTACCGCAAACTCTGGCCAAAACCCTAGAGGACCTGAAGTTCTCTCTTCTCACACTCGCCTTAAGGGTTGCATCATTGTCTTTCTACTTTACCCTCAATGGGAAACCCCTTCTCGGTTCCACTACGTTTTCTCTTATTCCTCCTTTTTTCACCTTAATCTTAAGAACCAGGGTCCTTAGAGGTGGTGGCGATGGCGGTGCAACAGGGGCTGAGTCGCATGACTGCTACCTTAGTATGTACGCAGAGAAGAAACCCGTTAAGGCCGACCCTGACGAGCAGAGGTTGTCCAAGTGGGTGAATTGTGCACTTTCTAACGAGCCTTTGAGGTAACCTTGTGTGATTGATTGGCTTGGAAATGTTTTCAATAAGGAATTGCTTGTTCTGGCTTTGTTTCAATATTCACCTCATCTAGGAAGTCAGACTTCAAGGAAACATTTTCTTGTAGATTTCTTCCACTCGGTCGAAACTGATTGGTGGTAAGAACTGCTTAGATGGGTTTGTGGCAATTCTTCTATTATTGTTTGTATTCGAACCTTCATTTTCAGCGACCTTCTGTGCTTATTGATTTATGTCTCATAGTTTCTAATTAATGTAAGATGTTAGTTTACACTTTACAGTCACCAACTGATGTTACTCTGTTGAATTGTTTTACATTTGTAGATGACTTAATATTGATGAAACACTTGTGCTGATCTCAATCCATTAACATTTAGTAGTACAACGTGGTAACAAACTGTTGACAAATTGGTACCATAAAACTCTTCTTCCAGGCTTTATCACATTAATCTGATGCCATTTGTGGATGAGTTAACATCTAGCAGTACAACGTGGTAACAAGCTAGTACCGTGAAACTCTTCTTCCAAGCTCTATCACATTAATTTGATACCATAATTGTCACTCTATTTTTGCTTGTATTTGTTCTTCAGGTGTGCAGTCTGTGGAAGCTGAGATTGATGCTAACAAATTGGCGGTATTTTAATTATACTAAATCTTTTTCTCATTTTACATGTTGTGTTTGCTCTGTGTTTGATACATATGGTATGTTCTTGTAGAATTAGGTGAGCGGGATAATGTAATTGTAGATGTCAATGTATGACGACATGAACGTGCTATCCAATATCATAGTTTTGGTAAACATTCTGTGGTAAAAACTTGAAAGGAAAACTGTGTGAACTTATCTAAATTATTTGACTACATGAATTCTCTAAAATGTGTTTGTGCAGTAATGTATGTAAGATTACCTGTTTTAGATTGAAAGAGATGTCTGAAAATCAATGAACAAACGTGTTTGCCTGATGAAGTCTAGTCATTGCCCCTATGTAGTTTGACCTTATGCATGTGTTTAAGGGGCTGTTTTGGAGGAGAATGTTAGGAACCATAGAGTTACCTCCCACGTCGGTTTGAATGAGATGACCAATGGTACCTAAGTGGCTTGACTCTCTAGTCTCACTTCAATAGCTCGTTTTTGGGATGTGGTTATTCAAGGTGTGTAATTTCGTCAACAATATCCCTTATCCATCTGCCCTCTCTCCTCTTATCATCATTCATATTGTTGGCGACATCCTTGACTTTCCTCTTCCTTTGAAATGGGTGCTTAATCTTGATGTTTAGATCTTCTTCCCCTCGTTTTTCTTGTTTAAATATGATCCTATCGGGGGATAGATCATTGACAGAACCCACAGATCTCCATGTAAAATTTTCTACTTGAATTGAATTTTTGTACGTGATTTTGAATTTTGAACTTGTATTATGATGATAATTCCTGGATTGTACTTTAGCTATTAAAAGGCTTTCTTGTTTTATAAATTTGTATTGCATTTCAACTAAATTGTAGGTTCGAACTTGCTCAGCAAAGATACAAGCTCTTTTAGGTGAGAATTAG

mRNA sequence

ATGACTTCACCTGTGACCAAGCACCTACCAACGGTTGCATCATTGTCTTTCTACTTTACCCTCAATGGGAAACCCCTTCTCGGTTCCACTACGTTTTCTCTTATTCCTCCTTTTTTCACCTTAATCTTAAGAACCAGGGTCCTTAGAGGTGGTGGCGATGGCGGTGCAACAGGGGCTGAGTCGCATGACTGCTACCTTAGTATGTACGCAGAGAAGAAACCCGTTAAGGCCGACCCTGACGAGCAGAGGTTGTCCAAGTGGGTGAATTGTGCACTTTCTAACGAGCCTTTGAGGCTTTATCACATTAATCTGATGCCATTTGTGGATGAGTTAACATCTAGCAGTGTGCAGTCTGTGGAAGCTGAGATTGATGCTAACAAATTGGCGGTTCGAACTTGCTCAGCAAAGATACAAGCTCTTTTAGGTGAGAATTAG

Coding sequence (CDS)

ATGACTTCACCTGTGACCAAGCACCTACCAACGGTTGCATCATTGTCTTTCTACTTTACCCTCAATGGGAAACCCCTTCTCGGTTCCACTACGTTTTCTCTTATTCCTCCTTTTTTCACCTTAATCTTAAGAACCAGGGTCCTTAGAGGTGGTGGCGATGGCGGTGCAACAGGGGCTGAGTCGCATGACTGCTACCTTAGTATGTACGCAGAGAAGAAACCCGTTAAGGCCGACCCTGACGAGCAGAGGTTGTCCAAGTGGGTGAATTGTGCACTTTCTAACGAGCCTTTGAGGCTTTATCACATTAATCTGATGCCATTTGTGGATGAGTTAACATCTAGCAGTGTGCAGTCTGTGGAAGCTGAGATTGATGCTAACAAATTGGCGGTTCGAACTTGCTCAGCAAAGATACAAGCTCTTTTAGGTGAGAATTAG

Protein sequence

MTSPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLRLYHINLMPFVDELTSSSVQSVEAEIDANKLAVRTCSAKIQALLGEN

Homology

[Close]

BLAST of MELO3C004727.2 vs. NCBI nr
Match: XP_011655923.1 (PREDICTED: protein RTF2 homolog [Cucumis sativus] >KGN65240.1 hypothetical protein Csa_1G269330 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 8.2e-34
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 3   SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESH 62
           S +T+ L +  + SFYFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES 
Sbjct: 41  SLLTEILASRIASSFYFTLNGKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESR 100

Query: 63  DCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR 99
           DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Sbjct: 101 DCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLR 136

[Close]

BLAST of MELO3C004727.2 vs. NCBI nr
Match: XP_008444038.1 (PREDICTED: protein RTF2 homolog [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 2.6e-32
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3   SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESH 62
           S +++ L +  + S YFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES 
Sbjct: 41  SLLSETLASRVASSLYFTLNGKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESR 100

Query: 63  DCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL 98
           DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Sbjct: 101 DCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPL 135

[Close]

BLAST of MELO3C004727.2 vs. NCBI nr
Match: XP_022922055.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 5.9e-32
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 9   LPTVASLSFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYL 68
           +P     SFYFTLNGKPLL STT   SLIPP  TLILRTRVL GGGDGGATGAES DCYL
Sbjct: 43  VPETIVSSFYFTLNGKPLLDSTTIPCSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYL 102

Query: 69  SMYAEKKPVKADPDEQRLSKWVNCALSNEPLR 99
           +MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Sbjct: 103 NMYAEKKPDKVDPNEQRLSKWLNCALSNEPLR 134

[Close]

BLAST of MELO3C004727.2 vs. NCBI nr
Match: XP_023516862.1 (protein RTF2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.7 bits (369), Expect = 5.9e-32
Identity = 73/92 (79.35%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 9   LPTVASLSFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYL 68
           +P     SFYFTLNGKPLL STT   SLIPP  TLILRTRVL GGGDGGATGAES DCYL
Sbjct: 43  VPETIVSSFYFTLNGKPLLDSTTIPSSLIPPLSTLILRTRVLGGGGDGGATGAESRDCYL 102

Query: 69  SMYAEKKPVKADPDEQRLSKWVNCALSNEPLR 99
           +MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Sbjct: 103 NMYAEKKPDKVDPNEQRLSKWLNCALSNEPLR 134

[Close]

BLAST of MELO3C004727.2 vs. NCBI nr
Match: XP_022933589.1 (protein RTF2 homolog [Cucurbita moschata])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 16  SFYFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKK 75
           SFYFTLNGKPLL S T   SL+PP  TLILRTRVL GGGDGGATGAES DCYL MYAEKK
Sbjct: 54  SFYFTLNGKPLLDSATISSSLVPPLSTLILRTRVLGGGGDGGATGAESRDCYLKMYAEKK 113

Query: 76  PVKADPDEQRLSKWVNCALSNEPLR 99
           P K DP+EQRLSKW+NCALSNEPLR
Sbjct: 114 PDKVDPNEQRLSKWLNCALSNEPLR 138

[Close]

BLAST of MELO3C004727.2 vs. TAIR10
Match: AT5G58020.1 (unknown protein)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-24
Identity = 60/100 (60.00%), Postives = 69/100 (69.00%), Query Frame = 0


Query: 3   SPVTKHLPTVASLSF---YFTLNGKPLLGSTTF--SLIPPFFTLILRTRVLRGGGDGGAT 62
           S +T  L +   +SF     TL+GK L GST    S +P    L L  R+  GGGDGGAT
Sbjct: 32  SGITSLLESSQRISFSACSITLDGKLLNGSTRIQVSKLPSVSMLTLFPRLRGGGGDGGAT 91

Query: 63  GAESHDCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL 98
           GAES DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Sbjct: 92  GAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPL 131

[Close]

BLAST of MELO3C004727.2 vs. TrEMBL
Match: tr|A0A0A0LTI5|A0A0A0LTI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.4e-34
Identity = 75/96 (78.12%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 3   SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESH 62
           S +T+ L +  + SFYFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES 
Sbjct: 41  SLLTEILASRIASSFYFTLNGKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESR 100

Query: 63  DCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR 99
           DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPLR
Sbjct: 101 DCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLR 136

[Close]

BLAST of MELO3C004727.2 vs. TrEMBL
Match: tr|A0A1S3B9F3|A0A1S3B9F3_CUCME (protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.7e-32
Identity = 72/95 (75.79%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3   SPVTKHLPTVASLSFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESH 62
           S +++ L +  + S YFTLNGKPLL STT SLIPP  TLILRTRVL GGGDGGATGAES 
Sbjct: 41  SLLSETLASRVASSLYFTLNGKPLLDSTTISLIPPLSTLILRTRVLGGGGDGGATGAESR 100

Query: 63  DCYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPL 98
           DCYL+MYAEKKP K DP+EQRLSKW+NCALSNEPL
Sbjct: 101 DCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPL 135

[Close]

BLAST of MELO3C004727.2 vs. TrEMBL
Match: tr|A0A2K3N9M8|A0A2K3N9M8_TRIPR (Protein RTF2 OS=Trifolium pratense OX=57577 GN=L195_g022968 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-28
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 6   TKHLPTVASLSFYFTLNGKPLLGSTTFSL--IPPFFTLILRTRVLRGGGDGGATGAESHD 65
           +++LP+    SFYFTLNGKP+   TTFS   I P  TL+L++R+L GGGDGGATGAES D
Sbjct: 37  SQYLPS----SFYFTLNGKPISDDTTFSTSRIAPLSTLVLQSRLLGGGGDGGATGAESRD 96

Query: 66  CYLSMYAEKKPVKADPDEQRLSKWVNCALSNEPLR 99
           CYL MYAEKKP K DP+EQRLSKW NCALSNEPLR
Sbjct: 97  CYLKMYAEKKPDKVDPNEQRLSKWQNCALSNEPLR 127

[Close]

BLAST of MELO3C004727.2 vs. TrEMBL
Match: tr|K7K9Q4|K7K9Q4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100779501 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 62/83 (74.70%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 16  SFYFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPV 75
           SFYFT NGKPL   T  S  PP  TL LR+R+L GGGDGGATGAES DCYL+MYA+KKP 
Sbjct: 42  SFYFTFNGKPLPDKTPLSQFPPLSTLSLRSRLLGGGGDGGATGAESRDCYLNMYADKKPD 101

Query: 76  KADPDEQRLSKWVNCALSNEPLR 99
           K DP+EQRLSKW NCALSNEPLR
Sbjct: 102 KVDPNEQRLSKWHNCALSNEPLR 124

[Close]

BLAST of MELO3C004727.2 vs. TrEMBL
Match: tr|A0A151RDC9|A0A151RDC9_CAJCA (UPF0549 protein C20orf43 isogeny OS=Cajanus cajan OX=3821 GN=KK1_038101 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.3e-27
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 18  YFTLNGKPLLGSTTFSLIPPFFTLILRTRVLRGGGDGGATGAESHDCYLSMYAEKKPVKA 77
           YFTLNGKPL   T  S +PP  TL LRTR+L GGGDGGATGAES DCYL MY+EKKP K 
Sbjct: 44  YFTLNGKPLSDQTPLSQLPPLSTLSLRTRLLGGGGDGGATGAESRDCYLHMYSEKKPDKV 103

Query: 78  DPDEQRLSKWVNCALSNEPLR 99
           DP+EQRLSKW NCALSNEPLR
Sbjct: 104 DPNEQRLSKWHNCALSNEPLR 124

The following BLAST results are available for this feature:

BLAST of MELO3C004727.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655923.1	8.2e-34	78.13	PREDICTED: protein RTF2 homolog [Cucumis sativus] >KGN65240.1 hypothetical prote...	[more]
XP_008444038.1	2.6e-32	75.79	PREDICTED: protein RTF2 homolog [Cucumis melo]	[more]
XP_022922055.1	5.9e-32	79.35	protein RTF2 homolog [Cucurbita moschata]	[more]
XP_023516862.1	5.9e-32	79.35	protein RTF2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022933589.1	3.8e-31	82.35	protein RTF2 homolog [Cucurbita moschata]	[more]

BLAST of MELO3C004727.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G58020.1	2.5e-24	60.00	unknown protein	[more]

BLAST of MELO3C004727.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004727.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LTI5\|A0A0A0LTI5_CUCSA	5.4e-34	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269330 PE=4 SV=1	[more]
tr\|A0A1S3B9F3\|A0A1S3B9F3_CUCME	1.7e-32	75.79	protein RTF2 homolog OS=Cucumis melo OX=3656 GN=LOC103487489 PE=4 SV=1	[more]
tr\|A0A2K3N9M8\|A0A2K3N9M8_TRIPR	4.5e-28	69.47	Protein RTF2 OS=Trifolium pratense OX=57577 GN=L195_g022968 PE=4 SV=1	[more]
tr\|K7K9Q4\|K7K9Q4_SOYBN	9.9e-28	74.70	Uncharacterized protein OS=Glycine max OX=3847 GN=100779501 PE=4 SV=1	[more]
tr\|A0A151RDC9\|A0A151RDC9_CAJCA	1.3e-27	76.54	UPF0549 protein C20orf43 isogeny OS=Cajanus cajan OX=3821 GN=KK1_038101 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027799	Rtf2_RING-finger

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1902979	mitotic DNA replication termination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004727.2.1	MELO3C004727.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027799	Replication termination factor 2, RING-finger	PFAM	PF04641	Rtf2	coord: 50..98 e-value: 2.8E-9 score: 36.6

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004727.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004727.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004727.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004727.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C004727.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C004727.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C004727.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004727.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004727.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004727.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004727.2	Watermelon (97103) v1	medwmB167
MELO3C004727.2	Silver-seed gourd	carmedB0000
MELO3C004727.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004727.2	Watermelon (97103) v2	medwmbB132
MELO3C004727.2	Wax gourd	medwgoB176