MELO3C004725.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004725.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	stress response protein NST1-like
Location	chr12 : 11625339 .. 11625977 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGACCAACACAAGAAAGCTCTTGAAACCTCTCATACCTCCAAGCTCATCCCGGAAAAGGATGCTTCATTTATTCAACCACAAGCAAAACACCTCAAAGTATCTAAGAAACCTGAATCTTCTTCCAAGAAATCCAGATCTGAGGGTTCTAGAAAGAAGATCCTCCTCAAGCCTCAAACACAAACATCATCTCCCCAAGCTCACTTCGTTAAACCTGATTTGGAGCAAGCACAAAGGCCTAAAAAGGACGCTACAGATTTCATTCTTGATATAGACGAACTGATGGGGCAAAAAGAGAACATTTGTAAAGGATTGCCAAATTTGGAGCCAGGCATGGAGACGATGTGGCTTGATAAAAACCAGCCCAGATATAAACATACGAAGCATGGGGTTAGTAAGGTGCTTGTGAGTCACATAGAGGCAAGCGATAAGGAAGGAACACAAGTACCTTCTCAGTTTTTTGATAAAGTGTTGGAGTTCATAAAAGAGTTAGAAGCGGCAAAGAGGAAGAAGAGTGAGGTGGTTGAAAGAAAGAAGTCTAAAGATGAGAAAAGAAAAGAAGAGGAGAGAAAGAAGCAAAAGAAGGATGAAGAAAGGACTCTACAAGAGGAGTGGGGTGAGAAGAGCAAAGAATAA

mRNA sequence

ATGGCTGACCAACACAAGAAAGCTCTTGAAACCTCTCATACCTCCAAGCTCATCCCGGAAAAGGATGCTTCATTTATTCAACCACAAGCAAAACACCTCAAAGTATCTAAGAAACCTGAATCTTCTTCCAAGAAATCCAGATCTGAGGGTTCTAGAAAGAAGATCCTCCTCAAGCCTCAAACACAAACATCATCTCCCCAAGCTCACTTCGTTAAACCTGATTTGGAGCAAGCACAAAGGCCTAAAAAGGACGCTACAGATTTCATTCTTGATATAGACGAACTGATGGGGCAAAAAGAGAACATTTGTAAAGGATTGCCAAATTTGGAGCCAGGCATGGAGACGATGTGGCTTGATAAAAACCAGCCCAGATATAAACATACGAAGCATGGGGTTAGTAAGGTGCTTGTGAGTCACATAGAGGCAAGCGATAAGGAAGGAACACAAGTACCTTCTCAGTTTTTTGATAAAGTGTTGGAGTTCATAAAAGAGTTAGAAGCGGCAAAGAGGAAGAAGAGTGAGGTGGTTGAAAGAAAGAAGTCTAAAGATGAGAAAAGAAAAGAAGAGGAGAGAAAGAAGCAAAAGAAGGATGAAGAAAGGACTCTACAAGAGGAGTGGGGTGAGAAGAGCAAAGAATAA

Coding sequence (CDS)

ATGGCTGACCAACACAAGAAAGCTCTTGAAACCTCTCATACCTCCAAGCTCATCCCGGAAAAGGATGCTTCATTTATTCAACCACAAGCAAAACACCTCAAAGTATCTAAGAAACCTGAATCTTCTTCCAAGAAATCCAGATCTGAGGGTTCTAGAAAGAAGATCCTCCTCAAGCCTCAAACACAAACATCATCTCCCCAAGCTCACTTCGTTAAACCTGATTTGGAGCAAGCACAAAGGCCTAAAAAGGACGCTACAGATTTCATTCTTGATATAGACGAACTGATGGGGCAAAAAGAGAACATTTGTAAAGGATTGCCAAATTTGGAGCCAGGCATGGAGACGATGTGGCTTGATAAAAACCAGCCCAGATATAAACATACGAAGCATGGGGTTAGTAAGGTGCTTGTGAGTCACATAGAGGCAAGCGATAAGGAAGGAACACAAGTACCTTCTCAGTTTTTTGATAAAGTGTTGGAGTTCATAAAAGAGTTAGAAGCGGCAAAGAGGAAGAAGAGTGAGGTGGTTGAAAGAAAGAAGTCTAAAGATGAGAAAAGAAAAGAAGAGGAGAGAAAGAAGCAAAAGAAGGATGAAGAAAGGACTCTACAAGAGGAGTGGGGTGAGAAGAGCAAAGAATAA

Protein sequence

MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQTQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDKNQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKRKKSEVVERKKSKDEKRKEEERKKQKKDEERTLQEEWGEKSKE

Homology

[Close]

BLAST of MELO3C004725.2 vs. NCBI nr
Match: XP_008464070.1 (PREDICTED: stress response protein NST1-like [Cucumis melo])

HSP 1 Score: 334.7 bits (857), Expect = 2.2e-88
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60
           MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ
Sbjct: 1   MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60

Query: 61  TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK 120
           TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK
Sbjct: 61  TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK 120

Query: 121 NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX 180
           NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX
Sbjct: 121 NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE 213
           XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE 212

[Close]

BLAST of MELO3C004725.2 vs. TrEMBL
Match: tr|A0A1S3CKM2|A0A1S3CKM2_CUCME (stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 1.5e-88
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60
           MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ
Sbjct: 1   MADQHKKALETSHTSKLIPEKDASFIQPQAKHLKVSKKPESSSKKSRSEGSRKKILLKPQ 60

Query: 61  TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK 120
           TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK
Sbjct: 61  TQTSSPQAHFVKPDLEQAQRPKKDATDFILDIDELMGQKENICKGLPNLEPGMETMWLDK 120

Query: 121 NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX 180
           NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX
Sbjct: 121 NQPRYKHTKHGVSKVLVSHIEASDKEGTQVPSQFFDKVLEFIKELEAAKXXXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE 213
           XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXEWGEKSKE 212

The following BLAST results are available for this feature:

BLAST of MELO3C004725.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464070.1	2.2e-88	100.00	PREDICTED: stress response protein NST1-like [Cucumis melo]	[more]

BLAST of MELO3C004725.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004725.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004725.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKM2\|A0A1S3CKM2_CUCME	1.5e-88	100.00	stress response protein NST1-like OS=Cucumis melo OX=3656 GN=LOC103502045 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004725.2.1	MELO3C004725.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 162..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..212

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004725.2	Watermelon (97103) v2	medwmbB132
MELO3C004725.2	Wax gourd	medwgoB176
MELO3C004725.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004725.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004725.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004725.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C004725.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C004725.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C004725.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004725.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004725.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004725.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004725.2	Watermelon (97103) v1	medwmB167
MELO3C004725.2	Silver-seed gourd	carmedB0000
MELO3C004725.2	Cucumber (Chinese Long) v3	cucmedB009