MELO3C004723.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004723.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 11664452 .. 11664844 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGGACAACATCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATTCCATCTGCCATTAGAATCAAAGACAAAGATGGTCATTTCTTTATGGTGCACACGGTCATAATCTGCTTAGTCAAATGGTTAGCAGAGCGTGATGTGAAAATCCATGGATCTTTTAGGAGACAAGTTGCTATTAATTTCAACAATTTCAATCCAAAAGCAAAGCAATTCAACTTCACCGGAGACTTGGCAATTCCGATCAGTGAATTCAAAATTCCAAGAAACAGAGCATTAATGACAGAGTTGACAAATGAAGAAGATCCCACAATAGCGCCAAGGAAATTTATGACAGGGATCTTCTATAATCAGGCAAAAAGAAATCCAAGAGGCTGA

mRNA sequence

ATGAACATGGACAACATCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATTCCATCTGCCATTAGAATCAAAGACAAAGATGGTCATTTCTTTATGGTGCACACGGTCATAATCTGCTTAGTCAAATGGTTAGCAGAGCGTGATGTGAAAATCCATGGATCTTTTAGGAGACAAGTTGCTATTAATTTCAACAATTTCAATCCAAAAGCAAAGCAATTCAACTTCACCGGAGACTTGGCAATTCCGATCAGTGAATTCAAAATTCCAAGAAACAGAGCATTAATGACAGAGTTGACAAATGAAGAAGATCCCACAATAGCGCCAAGGAAATTTATGACAGGGATCTTCTATAATCAGGCAAAAAGAAATCCAAGAGGCTGA

Coding sequence (CDS)

ATGAACATGGACAACATCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATTCCATCTGCCATTAGAATCAAAGACAAAGATGGTCATTTCTTTATGGTGCACACGGTCATAATCTGCTTAGTCAAATGGTTAGCAGAGCGTGATGTGAAAATCCATGGATCTTTTAGGAGACAAGTTGCTATTAATTTCAACAATTTCAATCCAAAAGCAAAGCAATTCAACTTCACCGGAGACTTGGCAATTCCGATCAGTGAATTCAAAATTCCAAGAAACAGAGCATTAATGACAGAGTTGACAAATGAAGAAGATCCCACAATAGCGCCAAGGAAATTTATGACAGGGATCTTCTATAATCAGGCAAAAAGAAATCCAAGAGGCTGA

Protein sequence

MNMDNILEAKIKVRYNYNGFIPSAIRIKDKDGHFFMVHTVIICLVKWLAERDVKIHGSFRRQVAINFNNFNPKAKQFNFTGDLAIPISEFKIPRNRALMTELTNEEDPTIAPRKFMTGIFYNQAKRNPRG

Homology

[Close]

BLAST of MELO3C004723.2 vs. NCBI nr
Match: ADN33672.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 3   MDNILEAKIKVRYNYNGFIPSAIRIKDKDGHFFMVHTVIICLVKWLAERDVKIHGSFRRQ 62
           + +++EA I+V+ NY+GFIP+ I++ DK+   +++  ++    KW   R+  IHG+F R+
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTRE 312

Query: 63  VAINFNNFNPKAKQFNFTGDLAI 86
            A  F+ FN  ++Q+ F G+LAI
Sbjct: 313 AARRFDEFNLNSEQYFFEGNLAI 335

[Close]

BLAST of MELO3C004723.2 vs. NCBI nr
Match: KGN61118.1 (hypothetical protein Csa_2G055060 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-09
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 20  FIPSAIRIKDKDGHFFMVHTVIICLVKWLAERDVKIHGSFRRQVAINFNNFNPKAKQFNF 79
           F+P+ IRI D  G+ F +  V     KWL ER+V+ HG F+ Q   +F  FNP AKQF F
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 80  TGDLAIPISEFKIPRNRALMTELTN 105
            G   +P       +N+ L  E+ N
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEIKN 92

[Close]

BLAST of MELO3C004723.2 vs. TrEMBL
Match: tr|E5GB30|E5GB30_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 3   MDNILEAKIKVRYNYNGFIPSAIRIKDKDGHFFMVHTVIICLVKWLAERDVKIHGSFRRQ 62
           + +++EA I+V+ NY+GFIP+ I++ DK+   +++  ++    KW   R+  IHG+F R+
Sbjct: 253 LTDLIEASIRVKDNYSGFIPAFIKLIDKEERSYIIQVIVKTEGKWHLGRNPSIHGTFTRE 312

Query: 63  VAINFNNFNPKAKQFNFTGDLAI 86
            A  F+ FN  ++Q+ F G+LAI
Sbjct: 313 AARRFDEFNLNSEQYFFEGNLAI 335

[Close]

BLAST of MELO3C004723.2 vs. TrEMBL
Match: tr|A0A0A0LH82|A0A0A0LH82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-09
Identity = 34/85 (40.00%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 20  FIPSAIRIKDKDGHFFMVHTVIICLVKWLAERDVKIHGSFRRQVAINFNNFNPKAKQFNF 79
           F+P+ IRI D  G+ F +  V     KWL ER+V+ HG F+ Q   +F  FNP AKQF F
Sbjct: 8   FVPAYIRITDDLGNSFPIQIVSHTQGKWLVERNVRKHGIFKSQATTSFGEFNPNAKQFTF 67

Query: 80  TGDLAIPISEFKIPRNRALMTELTN 105
            G   +P       +N+ L  E+ N
Sbjct: 68  IGSEGLPPKHPTSSKNKVLNDEIKN 92

The following BLAST results are available for this feature:

BLAST of MELO3C004723.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33672.1	1.7e-09	37.35	hypothetical protein [Cucumis melo subsp. melo]	[more]
KGN61118.1	6.3e-09	40.00	hypothetical protein Csa_2G055060 [Cucumis sativus]	[more]

BLAST of MELO3C004723.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004723.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004723.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GB30\|E5GB30_CUCME	1.1e-09	37.35	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A0A0LH82\|A0A0A0LH82_CUCSA	4.2e-09	40.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055060 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004723.2.1	MELO3C004723.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004723.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004723.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004723.2	Cucurbita maxima (Rimu)	cmamedB215
MELO3C004723.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C004723.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C004723.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C004723.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004723.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004723.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004723.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004723.2	Watermelon (97103) v1	medwmB167
MELO3C004723.2	Silver-seed gourd	carmedB0000
MELO3C004723.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004723.2	Watermelon (97103) v2	medwmbB132
MELO3C004723.2	Wax gourd	medwgoB176