MELO3C004719.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004719.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUbiquitin ligase protein cop1
Locationchr12 : 11728463 .. 11728795 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTCAGCTATTCACTCT

mRNA sequence

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTCAGCTATTCACTCT

Coding sequence (CDS)

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTCAGCTATTCACTCT

Protein sequence

MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRSAIHS
Homology
[Close]
BLAST of MELO3C004719.2 vs. NCBI nr
Match: XP_004148378.2 (PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus] >KGN60479.1 Ubiquitin ligase protein cop1 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 4.8e-50
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDGGM--------GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRS 108
           EFDGG+             LVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKKRS
Sbjct: 330 EFDGGVXXXXXXXXXXXXXLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRS 384

[Close]
BLAST of MELO3C004719.2 vs. NCBI nr
Match: XP_022952662.1 (WD repeat-containing protein RUP2-like [Cucurbita moschata])

HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MWKTEE----GGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEP 60
           MWK EE    GGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE 
Sbjct: 246 MWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEA 305

Query: 61  IWVKEFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRS 108
           +WV+EFD  +GSGYGLVSSVCWRQVGE  CTLVAGGSDG+L+VFVG KKRS
Sbjct: 306 VWVEEFD-RVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKKRS 355

[Close]
BLAST of MELO3C004719.2 vs. NCBI nr
Match: XP_023554180.1 (WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 1.1e-46
Identity = 93/111 (83.78%), Postives = 98/111 (88.29%), Query Frame = 0 

Query: 1   MWKTEE----GGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEP 60
           MWK EE    GGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE 
Sbjct: 246 MWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEA 305

Query: 61  IWVKEFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRS 108
           +WV+EFD  +GSGYGLVSSVCWRQVGE  CTLVAGGSDG+L+VFVG K RS
Sbjct: 306 VWVEEFD-RVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKTRS 355

[Close]
BLAST of MELO3C004719.2 vs. NCBI nr
Match: XP_022971842.1 (WD repeat-containing protein RUP2-like [Cucurbita maxima])

HSP 1 Score: 193.4 bits (490), Expect = 4.2e-46
Identity = 94/111 (84.68%), Postives = 99/111 (89.19%), Query Frame = 0 

Query: 1   MWKTEEG--GGAR--VVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEP 60
           MWK EEG  GGAR  VVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKRVFVYDKRWGE 
Sbjct: 245 MWKAEEGGDGGARAGVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDKRWGEA 304

Query: 61  IWVKEFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRS 108
           +WV+EFD  +GSGYGLVSSVCWRQVGE  CTLVAGGSDG+L+VFVG KKRS
Sbjct: 305 VWVEEFD-RVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKKRS 354

[Close]
BLAST of MELO3C004719.2 vs. NCBI nr
Match: PON66416.1 (Guanine nucleotide-binding protein, beta subunit [Trema orientalis])

HSP 1 Score: 166.0 bits (419), Expect = 7.2e-38
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MW T     +RV+RTY GHVN RSFVGLSVWR GGL+GCGSE+ +VFVYDKRWG+PIWV 
Sbjct: 290 MWDTVH---SRVIRTYMGHVNNRSFVGLSVWRNGGLLGCGSENNQVFVYDKRWGQPIWVH 349

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRSA 109
            F   GG GS  G VSSVCWRQVGE+ CTLVAGGSDG+LQVFVG++K S+
Sbjct: 350 GFGPMGGPGSDRGFVSSVCWRQVGEERCTLVAGGSDGVLQVFVGNRKSSS 396

[Close]
BLAST of MELO3C004719.2 vs. TAIR10
Match: AT5G23730.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 150.6 bits (379), Expect = 5.7e-37
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G   CTLVAGGSDG+LQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]
BLAST of MELO3C004719.2 vs. TAIR10
Match: AT5G52250.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.0e-29
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]
BLAST of MELO3C004719.2 vs. TAIR10
Match: AT2G32950.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]
BLAST of MELO3C004719.2 vs. TAIR10
Match: AT3G15354.1 (SPA1-related 3)

HSP 1 Score: 54.3 bits (129), Expect = 5.6e-08
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------G 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         
Sbjct: 744 LHSFTGHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLE 803

Query: 73  MGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQV 100
           +      +SS+CWR    Q  TLVA  S+G +++
Sbjct: 804 VDDASQFISSICWR---GQSSTLVAANSNGNIKI 832

[Close]
BLAST of MELO3C004719.2 vs. TAIR10
Match: AT1G53090.1 (SPA1-related 4)

HSP 1 Score: 53.5 bits (127), Expect = 9.5e-08
Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF-------DGG 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+   +F       +  
Sbjct: 702 LHSFMGHTNVKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSELE 761

Query: 73  MGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQV 100
           +      +SSVCWR    Q  TLVA  S G +++
Sbjct: 762 VDDASQFISSVCWR---GQSSTLVAANSTGNIKI 790

[Close]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match: sp|Q9FFA7|RUP2_ARATH (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.0e-35
Identity = 71/108 (65.74%), Postives = 83/108 (76.85%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G   CTLVAGGSDG+LQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match: sp|Q9LTJ6|RUP1_ARATH (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.5e-28
Identity = 62/96 (64.58%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match: sp|P93471|COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-08
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V  +   I CGSE   VFVY K   +P+    F      D   
Sbjct: 580 VRTFRGHANEKNFVGLTV--RSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAED 639

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 640 EAGSYFISAVCWK---SDRPTILTANSQGTIKVLV 669

[Close]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match: sp|P43254|COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-07
Identity = 32/95 (33.68%), Postives = 47/95 (49.47%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match: sp|Q9LJR3|SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-06
Identity = 33/94 (35.11%), Postives = 48/94 (51.06%), Query Frame = 0 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDG-------G 72
           + ++ GH N ++FVGLSV    G I  GSE   VFVY K +  P+    F+         
Sbjct: 752 LHSFTGHTNLKNFVGLSV--SDGYIATGSETNEVFVYHKAFPMPVMSYMFNNTDSMSGLE 811

Query: 73  MGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQV 100
           +      +SS+CWR    Q  TLVA  S+G +++
Sbjct: 812 VDDASQFISSICWR---GQSSTLVAANSNGNIKI 840

[Close]
BLAST of MELO3C004719.2 vs. TrEMBL
Match: tr|A0A0A0LHK2|A0A0A0LHK2_CUCSA (Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-50
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDGGM--------GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRS 108
           EFDGG+             LVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKKRS
Sbjct: 330 EFDGGVXXXXXXXXXXXXXLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKKRS 384

[Close]
BLAST of MELO3C004719.2 vs. TrEMBL
Match: tr|A0A2P5CZF0|A0A2P5CZF0_9ROSA (Guanine nucleotide-binding protein, beta subunit OS=Trema orientalis OX=63057 GN=TorRG33x02_267640 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.8e-38
Identity = 78/110 (70.91%), Postives = 89/110 (80.91%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MW T     +RV+RTY GHVN RSFVGLSVWR GGL+GCGSE+ +VFVYDKRWG+PIWV 
Sbjct: 290 MWDTVH---SRVIRTYMGHVNNRSFVGLSVWRNGGLLGCGSENNQVFVYDKRWGQPIWVH 349

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRSA 109
            F   GG GS  G VSSVCWRQVGE+ CTLVAGGSDG+LQVFVG++K S+
Sbjct: 350 GFGPMGGPGSDRGFVSSVCWRQVGEERCTLVAGGSDGVLQVFVGNRKSSS 396

[Close]
BLAST of MELO3C004719.2 vs. TrEMBL
Match: tr|A0A2P5CUG4|A0A2P5CUG4_PARAD (Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=3476 GN=PanWU01x14_121720 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.5e-36
Identity = 76/110 (69.09%), Postives = 87/110 (79.09%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MW T     +RV+RTY GHVN RSFVGLSVWR GGL+GCGSE+ +VFVYDKRWG+PIWV 
Sbjct: 325 MWDTVR---SRVIRTYMGHVNNRSFVGLSVWRNGGLLGCGSENNQVFVYDKRWGQPIWVH 384

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRSA 109
            F   GG GS    VSSVCWRQ GE+ CTLVAGGSDG+LQVFVG++K S+
Sbjct: 385 GFGPMGGPGSDRCFVSSVCWRQAGEERCTLVAGGSDGVLQVFVGNRKSSS 431

[Close]
BLAST of MELO3C004719.2 vs. TrEMBL
Match: tr|W9S7H7|W9S7H7_9ROSA (E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.8e-36
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  ++   AR VRTY+GHVN RSFVGLSVWRKGGL+GCGSE+ +VFVYDKRWGEPIWV+
Sbjct: 290 LWNIDD---ARAVRTYKGHVNNRSFVGLSVWRKGGLLGCGSENNQVFVYDKRWGEPIWVR 349

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQG-CTLVAGGSDGILQVFVGHKKRS 108
            F+  G  G   G VSSVCWRQVGE+  CTLVAGGSDG LQVFVG +K S
Sbjct: 350 GFEPTGESGCERGFVSSVCWRQVGEEDECTLVAGGSDGALQVFVGTRKPS 396

[Close]
BLAST of MELO3C004719.2 vs. TrEMBL
Match: tr|A0A2P4IHM2|A0A2P4IHM2_QUESU (Wd repeat-containing protein rup2 OS=Quercus suber OX=58331 GN=CFP56_26917 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.7e-35
Identity = 73/110 (66.36%), Postives = 86/110 (78.18%), Query Frame = 0 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  ++    RV+RTY+GHVN RSFVGLSVWR GGL+GCGSE+ RVFVYDKRWGEPIWV 
Sbjct: 258 LWNVDD--STRVIRTYKGHVNSRSFVGLSVWRNGGLLGCGSENNRVFVYDKRWGEPIWVH 317

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKRSA 109
            F+   G G  +G VSSVCW QVGE   TL+AGGSDG+LQVFVG +K S+
Sbjct: 318 GFEPVAGPGCDHGFVSSVCWGQVGEDQFTLLAGGSDGVLQVFVGKRKLSS 365

The following BLAST results are available for this feature:
BLAST of MELO3C004719.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004148378.24.8e-5085.22PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus] >KGN60479.1 ... [more]
XP_022952662.12.2e-4784.68WD repeat-containing protein RUP2-like [Cucurbita moschata][more]
XP_023554180.11.1e-4683.78WD repeat-containing protein RUP2-like [Cucurbita pepo subsp. pepo][more]
XP_022971842.14.2e-4684.68WD repeat-containing protein RUP2-like [Cucurbita maxima][more]
PON66416.17.2e-3870.91Guanine nucleotide-binding protein, beta subunit [Trema orientalis][more]
BLAST of MELO3C004719.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23730.15.7e-3765.74Transducin/WD40 repeat-like superfamily protein[more]
AT5G52250.12.0e-2964.58Transducin/WD40 repeat-like superfamily protein[more]
AT2G32950.11.1e-0833.68Transducin/WD40 repeat-like superfamily protein[more]
AT3G15354.15.6e-0835.11SPA1-related 3[more]
AT1G53090.19.5e-0836.17SPA1-related 4[more]
BLAST of MELO3C004719.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FFA7|RUP2_ARATH1.0e-3565.74WD repeat-containing protein RUP2 OS=Arabidopsis thaliana OX=3702 GN=RUP2 PE=1 S... [more]
sp|Q9LTJ6|RUP1_ARATH3.5e-2864.58WD repeat-containing protein RUP1 OS=Arabidopsis thaliana OX=3702 GN=RUP1 PE=1 S... [more]
sp|P93471|COP1_PEA5.3e-0835.79E3 ubiquitin-protein ligase COP1 OS=Pisum sativum OX=3888 GN=COP1 PE=2 SV=1[more]
sp|P43254|COP1_ARATH2.0e-0733.68E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana OX=3702 GN=COP1 PE=1 SV... [more]
sp|Q9LJR3|SPA3_ARATH1.0e-0635.11Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1[more]
BLAST of MELO3C004719.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LHK2|A0A0A0LHK2_CUCSA3.2e-5085.22Ubiquitin ligase protein cop1 OS=Cucumis sativus OX=3659 GN=Csa_3G914590 PE=4 SV... [more]
tr|A0A2P5CZF0|A0A2P5CZF0_9ROSA4.8e-3870.91Guanine nucleotide-binding protein, beta subunit OS=Trema orientalis OX=63057 GN... [more]
tr|A0A2P5CUG4|A0A2P5CUG4_PARAD1.5e-3669.09Guanine nucleotide-binding protein, beta subunit OS=Parasponia andersonii OX=347... [more]
tr|W9S7H7|W9S7H7_9ROSA5.8e-3670.00E3 ubiquitin-protein ligase COP1 OS=Morus notabilis OX=981085 GN=L484_015775 PE=... [more]
tr|A0A2P4IHM2|A0A2P4IHM2_QUESU1.7e-3566.36Wd repeat-containing protein rup2 OS=Quercus suber OX=58331 GN=CFP56_26917 PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR015943WD40/YVTN_repeat-like_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004719.2.1MELO3C004719.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3DG3DSA:2.130.10.10coord: 1..101
e-value: 2.2E-18
score: 68.3
NoneNo IPR availablePANTHERPTHR45389FAMILY NOT NAMEDcoord: 2..105
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILYSSF50978WD40 repeat-likecoord: 11..99

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004719.2Cucumber (Gy14) v2cgybmedB009
MELO3C004719.2Cucumber (Gy14) v1cgymedB361
MELO3C004719.2Cucurbita maxima (Rimu)cmamedB425
MELO3C004719.2Cucurbita moschata (Rifu)cmomedB400
MELO3C004719.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C004719.2Wild cucumber (PI 183967)cpimedB011
MELO3C004719.2Cucumber (Chinese Long) v2cumedB010
MELO3C004719.2Bottle gourd (USVL1VR-Ls)lsimedB255
MELO3C004719.2Watermelon (Charleston Gray)medwcgB133
MELO3C004719.2Watermelon (97103) v1medwmB167
MELO3C004719.2Silver-seed gourdcarmedB0000
MELO3C004719.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004719.2Watermelon (97103) v2medwmbB132
MELO3C004719.2Wax gourdmedwgoB176