MELO3C004719 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004719
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionUbiquitin ligase protein cop1
Locationchr12 : 11724873 .. 11725295 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGGTCAGCTATTCACTCTATAATATTTTTCTTCTCAAAACATAACAAATACTGTATTATTATTATAAATTCAAAAAAGCAACAACGCTCAGCTATTCAATTTAGCTAA

mRNA sequence

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGCTAA

Coding sequence (CDS)

ATGTGGAAGACGGAGGAGGGCGGGGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAACGGGAGGAGCTTTGTGGGGTTGTCAGTGTGGAGGAAGGGGGGCTTAATCGGGTGTGGATCGGAGGACAAGAGAGTGTTTGTGTACGATAAGAGGTGGGGAGAGCCAATATGGGTAAAGGAATTTGATGGGGGGATGGGGTCGGGTTATGGGTTGGTCAGTAGTGTGTGTTGGAGGCAAGTGGGAGAGCAAGGATGCACCTTGGTAGCTGGCGGGTCGGATGGCATTTTGCAAGTTTTTGTCGGACACAAGAAGAGCTAA

Protein sequence

MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEFDGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKS*
Homology
[Close]
BLAST of MELO3C004719 vs. Swiss-Prot
Match: RUP2_ARATH (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-35
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G   CTLVAGGSDG+LQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]
BLAST of MELO3C004719 vs. Swiss-Prot
Match: RUP1_ARATH (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 7.5e-28
Identity = 62/96 (64.58%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]
BLAST of MELO3C004719 vs. Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 34/95 (35.79%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V  +   I CGSE   VFVY K   +P+    F      D   
Sbjct: 580 VRTFRGHANEKNFVGLTV--RSEYIACGSETNEVFVYHKEISKPLTWHRFGTLDMEDAED 639

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 640 EAGSYFISAVCWK---SDRPTILTANSQGTIKVLV 669

[Close]
BLAST of MELO3C004719 vs. Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.3e-07
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]
BLAST of MELO3C004719 vs. Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.1e-06
Identity = 37/93 (39.78%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 15   TYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF---DGGMGSGY- 74
            TY+GH N ++FVGLSV    G I CGSE   V+ Y K    P+   +F   D   G+ Y 
Sbjct: 938  TYKGHTNQKNFVGLSV--LDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYF 997

Query: 75   ----GLVSSVCWRQVGEQGCTLVAGGSDGILQV 100
                  VSSVCWR+       LVA  S G +++
Sbjct: 998  DDNGQFVSSVCWRKKSNM---LVAANSTGNMKL 1025

[Close]
BLAST of MELO3C004719 vs. TrEMBL
Match: A0A0A0LHK2_CUCSA (Ubiquitin ligase protein cop1 OS=Cucumis sativus GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-53
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDG--------GMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
           EFDG        GMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 382

[Close]
BLAST of MELO3C004719 vs. TrEMBL
Match: W9S7H7_9ROSA (E3 ubiquitin-protein ligase COP1 OS=Morus notabilis GN=L484_015775 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-35
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  ++   AR VRTY+GHVN RSFVGLSVWRKGGL+GCGSE+ +VFVYDKRWGEPIWV+
Sbjct: 290 LWNIDD---ARAVRTYKGHVNNRSFVGLSVWRKGGLLGCGSENNQVFVYDKRWGEPIWVR 349

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQG-CTLVAGGSDGILQVFVGHKK 106
            F+  G  G   G VSSVCWRQVGE+  CTLVAGGSDG LQVFVG +K
Sbjct: 350 GFEPTGESGCERGFVSSVCWRQVGEEDECTLVAGGSDGALQVFVGTRK 394

[Close]
BLAST of MELO3C004719 vs. TrEMBL
Match: V4S493_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005222mg PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W   +   +RV+RTY+GHVN R+FVGLSVWR GGL+GCGSE  +VFVYD RWGEP+WV 
Sbjct: 258 LWNVND---SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 317

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
           +F+     GS  G VSSVCWR+VGE  CTLVAGGSDG+L VFVG KK
Sbjct: 318 DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361

[Close]
BLAST of MELO3C004719 vs. TrEMBL
Match: A0A067F9Y4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017773mg PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 70/107 (65.42%), Postives = 83/107 (77.57%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W   +   +RV+RTY+GHVN R+FVGLSVWR GGL+GCGSE  +VFVYD RWGEP+WV 
Sbjct: 258 LWNVND---SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSETNQVFVYDVRWGEPVWVH 317

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
           +F+     GS  G VSSVCWR+VGE  CTLVAGGSDG+L VFVG KK
Sbjct: 318 DFEPVTAAGSERGFVSSVCWRRVGEDECTLVAGGSDGLLHVFVGKKK 361

[Close]
BLAST of MELO3C004719 vs. TrEMBL
Match: M5X3Q2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022067mg PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 72/112 (64.29%), Postives = 82/112 (73.21%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W TE+   +R +RTY+GH N RSFVGLSVWR G LIGCGSED RV+VYDKRWGEPIW+ 
Sbjct: 266 LWGTED---SREIRTYKGHTNNRSFVGLSVWRNGKLIGCGSEDNRVYVYDKRWGEPIWLH 325

Query: 61  EF-------DGGMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
            F        GG     G VSSVCWRQVGE+ CTL+AGGSDG LQVF G +K
Sbjct: 326 GFGAVGEGSSGGCDEELGFVSSVCWRQVGEEQCTLIAGGSDGDLQVFSGRRK 374

[Close]
BLAST of MELO3C004719 vs. TAIR10
Match: AT5G23730.1 (AT5G23730.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 148.7 bits (374), Expect = 2.1e-36
Identity = 71/108 (65.74%), Postives = 81/108 (75.00%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  E+G   RV+RTYEGHVN R+FVGLSVWR G L GCGSE+ RVFVYD+RWG+P+WV 
Sbjct: 263 LWSVEDG---RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNRVFVYDRRWGKPVWVD 322

Query: 61  EFDG-GMGSGYG--LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
            F+  GM SG     VSSVCWRQ G   CTLVAGGSDG+LQV+VG +K
Sbjct: 323 GFEPVGMNSGSDKRFVSSVCWRQSGVDQCTLVAGGSDGVLQVYVGKRK 367

[Close]
BLAST of MELO3C004719 vs. TAIR10
Match: AT5G52250.1 (AT5G52250.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 4.2e-29
Identity = 62/96 (64.58%), Postives = 67/96 (69.79%), Query Frame = 1 

Query: 9   GARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWV--KEFDGGM 68
           G RVVRTY GHVN R+FVGLSVWR GGL+  GSE+ +VFVYDKRW EP+WV         
Sbjct: 287 GRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQVFVYDKRWEEPVWVCGLGHTNRF 346

Query: 69  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVG 103
           GS    VSSVC RQV E  CTLVAGGSDG L++F G
Sbjct: 347 GSDRRFVSSVCLRQVDEDWCTLVAGGSDGALEIFSG 382

[Close]
BLAST of MELO3C004719 vs. TAIR10
Match: AT2G32950.1 (AT2G32950.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-08
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1 

Query: 13  VRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF------DGGM 72
           VRT+ GH N ++FVGL+V      + CGSE   V+VY K    P+    F      D   
Sbjct: 583 VRTFRGHTNEKNFVGLTV--NSEYLACGSETNEVYVYHKEITRPVTSHRFGSPDMDDAEE 642

Query: 73  GSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFV 102
            +G   +S+VCW+       T++   S G ++V V
Sbjct: 643 EAGSYFISAVCWK---SDSPTMLTANSQGTIKVLV 672

[Close]
BLAST of MELO3C004719 vs. TAIR10
Match: AT2G46340.1 (AT2G46340.1 SPA (suppressor of phyA-105) protein family)

HSP 1 Score: 51.2 bits (121), Expect = 4.5e-07
Identity = 37/93 (39.78%), Postives = 46/93 (49.46%), Query Frame = 1 

Query: 15   TYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVKEF---DGGMGSGY- 74
            TY+GH N ++FVGLSV    G I CGSE   V+ Y K    P+   +F   D   G+ Y 
Sbjct: 938  TYKGHTNQKNFVGLSV--LDGYIACGSETNEVYSYYKSLPMPMTSYKFGSVDPISGNEYF 997

Query: 75   ----GLVSSVCWRQVGEQGCTLVAGGSDGILQV 100
                  VSSVCWR+       LVA  S G +++
Sbjct: 998  DDNGQFVSSVCWRKKSNM---LVAANSTGNMKL 1025

[Close]
BLAST of MELO3C004719 vs. NCBI nr
Match: gi|778688229|ref|XP_004148378.2| (PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 3.0e-53
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWR+GGLIGCGSEDKRVFVYDKRWGEPIWVK
Sbjct: 270 MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKRVFVYDKRWGEPIWVK 329

Query: 61  EFDG--------GMGSGYGLVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKK 106
           EFDG        GMGSGYGLVSSVCWRQVGEQ CTLVAGGSDG+LQVFVGHKK
Sbjct: 330 EFDGGVGVGVGVGMGSGYGLVSSVCWRQVGEQECTLVAGGSDGVLQVFVGHKK 382

[Close]
BLAST of MELO3C004719 vs. NCBI nr
Match: gi|657944975|ref|XP_008377410.1| (PREDICTED: WD repeat-containing protein RUP2-like [Malus domestica])

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W TE+   +R + TY+GH N RSFVGLSVWR GGLIGCGSE+ R+FVYDKRWGEPIWV 
Sbjct: 288 LWDTED---SRAIETYKGHANSRSFVGLSVWRNGGLIGCGSENNRLFVYDKRWGEPIWVH 347

Query: 61  EFD----GGMGSGYG-----LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKS 107
           EF     GG   G G      VSSVCWRQVGE+ CTLVAGGSDG+LQVF+G +KS
Sbjct: 348 EFGAVAAGGSSGGCGEEEGAFVSSVCWRQVGEEQCTLVAGGSDGVLQVFLGRRKS 399

[Close]
BLAST of MELO3C004719 vs. NCBI nr
Match: gi|694424471|ref|XP_009340009.1| (PREDICTED: WD repeat-containing protein RUP2-like [Pyrus x bretschneideri])

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-35
Identity = 76/115 (66.09%), Postives = 87/115 (75.65%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W TE+   +R + TY+GH N RSFVGLSVWR GGLIGCGSE+ R+FVYDKRWGEPIWV 
Sbjct: 288 LWDTED---SRAIETYKGHANSRSFVGLSVWRNGGLIGCGSENNRLFVYDKRWGEPIWVH 347

Query: 61  EFD----GGMGSGYG-----LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKS 107
           EF     GG   G G      VSSVCWRQVGE+ CTLVAGGSDG+LQVF+G +KS
Sbjct: 348 EFGAVAAGGSSGGCGDEEGAFVSSVCWRQVGEEQCTLVAGGSDGVLQVFLGRRKS 399

[Close]
BLAST of MELO3C004719 vs. NCBI nr
Match: gi|703141155|ref|XP_010107434.1| (E3 ubiquitin-protein ligase COP1 [Morus notabilis])

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-35
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W  ++   AR VRTY+GHVN RSFVGLSVWRKGGL+GCGSE+ +VFVYDKRWGEPIWV+
Sbjct: 290 LWNIDD---ARAVRTYKGHVNNRSFVGLSVWRKGGLLGCGSENNQVFVYDKRWGEPIWVR 349

Query: 61  EFD--GGMGSGYGLVSSVCWRQVGEQG-CTLVAGGSDGILQVFVGHKK 106
            F+  G  G   G VSSVCWRQVGE+  CTLVAGGSDG LQVFVG +K
Sbjct: 350 GFEPTGESGCERGFVSSVCWRQVGEEDECTLVAGGSDGALQVFVGTRK 394

[Close]
BLAST of MELO3C004719 vs. NCBI nr
Match: gi|657969678|ref|XP_008376565.1| (PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Malus domestica])

HSP 1 Score: 154.8 bits (390), Expect = 8.3e-35
Identity = 76/116 (65.52%), Postives = 86/116 (74.14%), Query Frame = 1 

Query: 1   MWKTEEGGGARVVRTYEGHVNGRSFVGLSVWRKGGLIGCGSEDKRVFVYDKRWGEPIWVK 60
           +W TE+   +R +RTY+GH N RSFVGLSVWR G LIGCGSE+ RVFVYDKRWGEPIWV 
Sbjct: 288 LWDTED---SRAIRTYKGHANSRSFVGLSVWRNGELIGCGSENNRVFVYDKRWGEPIWVH 347

Query: 61  EF---------DGGMGSGYG-LVSSVCWRQVGEQGCTLVAGGSDGILQVFVGHKKS 107
            F          GG G   G  VSSVCWRQVGE+ CTLVAGGSDG+LQVF+G +KS
Sbjct: 348 GFGEVGAGSSNSGGCGEDLGAFVSSVCWRQVGEEQCTLVAGGSDGVLQVFLGRRKS 400

The following BLAST results are available for this feature:
BLAST of MELO3C004719 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUP2_ARATH3.7e-3565.74WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1[more]
RUP1_ARATH7.5e-2864.58WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1[more]
COP1_PEA1.9e-0735.79E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1[more]
COP1_ARATH7.3e-0733.68E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2[more]
SPA1_ARATH8.1e-0639.78Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1[more]
BLAST of MELO3C004719 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHK2_CUCSA2.1e-5390.27Ubiquitin ligase protein cop1 OS=Cucumis sativus GN=Csa_3G914590 PE=4 SV=1[more]
W9S7H7_9ROSA3.4e-3570.37E3 ubiquitin-protein ligase COP1 OS=Morus notabilis GN=L484_015775 PE=4 SV=1[more]
V4S493_9ROSI1.1e-3365.42Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005222mg PE=4 SV=1[more]
A0A067F9Y4_CITSI1.1e-3365.42Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017773mg PE=4 SV=1[more]
M5X3Q2_PRUPE1.4e-3364.29Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022067mg PE=4 SV=1[more]
BLAST of MELO3C004719 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23730.12.1e-3665.74 Transducin/WD40 repeat-like superfamily protein[more]
AT5G52250.14.2e-2964.58 Transducin/WD40 repeat-like superfamily protein[more]
AT2G32950.14.1e-0833.68 Transducin/WD40 repeat-like superfamily protein[more]
AT2G46340.14.5e-0739.78 SPA (suppressor of phyA-105) protein family[more]
BLAST of MELO3C004719 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688229|ref|XP_004148378.2|3.0e-5390.27PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus][more]
gi|657944975|ref|XP_008377410.1|1.3e-3566.09PREDICTED: WD repeat-containing protein RUP2-like [Malus domestica][more]
gi|694424471|ref|XP_009340009.1|1.3e-3566.09PREDICTED: WD repeat-containing protein RUP2-like [Pyrus x bretschneideri][more]
gi|703141155|ref|XP_010107434.1|4.8e-3570.37E3 ubiquitin-protein ligase COP1 [Morus notabilis][more]
gi|657969678|ref|XP_008376565.1|8.3e-3565.52PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Malus domesti... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004719T1MELO3C004719T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 2..100
score: 4.
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 11..99
score: 9.42

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004719Silver-seed gourdcarmeB0000
MELO3C004719Cucumber (Chinese Long) v3cucmeB010
MELO3C004719Watermelon (97103) v2mewmbB143
MELO3C004719Wax gourdmewgoB174
MELO3C004719Cucumber (Gy14) v1cgymeB365
MELO3C004719Cucurbita maxima (Rimu)cmameB204
MELO3C004719Cucurbita maxima (Rimu)cmameB368
MELO3C004719Cucurbita moschata (Rifu)cmomeB353
MELO3C004719Wild cucumber (PI 183967)cpimeB011
MELO3C004719Cucumber (Chinese Long) v2cumeB015
MELO3C004719Watermelon (Charleston Gray)mewcgB141
MELO3C004719Cucurbita pepo (Zucchini)cpemeB028
MELO3C004719Bottle gourd (USVL1VR-Ls)lsimeB244
MELO3C004719Cucumber (Gy14) v2cgybmeB010