MELO3C004718.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004718.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr12 : 11729093 .. 11729416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGATTCAACCCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

mRNA sequence

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGATTCAACCCTAAACCCTAAAGTGAGATTGAGAAGAGAGGGAAGAAAGGC

Coding sequence (CDS)

ATGCTCTTCCGAGGAAAATGTGAAATTAGATGGATCTCTGAATCTCGTGTCGGAAATGAAGCGGAAGATTCAGAGAAAGATGAAAAGGACAACGACGGAAGAGATAGAGATGTGGTTTATGCGTCGTCTTCCATGCCATCGTCGCCAAAAAATGCTCTCATTCCGACAAGGTGTAGATTTACACCAAATCATTCGTCGTTTAACGAGAACCGGTACCAGAGTTCTTCGATTACAAGTGACAGAACTATCGAAGAAGAAGAGAAAATAGAGCGGTGA

Protein sequence

MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRFTPNHSSFNENRYQSSSITSDRTIEEEEKIER

Homology

[Close]

BLAST of MELO3C004718.2 vs. NCBI nr
Match: XP_008449922.1 (PREDICTED: uncharacterized protein LOC103491651 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 8.3e-24
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1   MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
           MLFRGK EIR ISESRVGNEAEDS         RDRD VYASSS+PS PKNALI TRCR 
Sbjct: 106 MLFRGKREIRRISESRVGNEAEDSXXXXXXXXXRDRDAVYASSSVPSPPKNALILTRCRS 165

Query: 61  TPNHSSFNENRYQSSSITSD-RTIEEEEKIER 92
           TPN SSFN+NRY+SSSITSD  T+EEEEK ER
Sbjct: 166 TPNRSSFNDNRYRSSSITSDGSTVEEEEKTER 197

[Close]

BLAST of MELO3C004718.2 vs. NCBI nr
Match: KGN48131.1 (hypothetical protein Csa_6G439970 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 60/92 (65.22%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1   MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
           ML RGK EIR ISESRVGNEAEDS          D D VY+S S+PS PKNALI +RCR 
Sbjct: 106 MLCRGKREIRRISESRVGNEAEDSXXXXXXXXXXDGDAVYSSFSVPSPPKNALILSRCRS 165

Query: 61  TPNHSSFNENRYQSSSITSDRT--IEEEEKIE 91
            PN SSFN  RY+SSSITSD T  +EEEEK E
Sbjct: 166 APNRSSFNGTRYRSSSITSDGTVEVEEEEKTE 197

[Close]

BLAST of MELO3C004718.2 vs. NCBI nr
Match: XP_011658465.1 (PREDICTED: uncharacterized protein LOC105436016 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 2.0e-17
Identity = 60/92 (65.22%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
          ML RGK EIR ISESRVGNEAEDS          D D VY+S S+PS PKNALI +RCR 
Sbjct: 1  MLCRGKREIRRISESRVGNEAEDSXXXXXXXXXXDGDAVYSSFSVPSPPKNALILSRCRS 60

Query: 61 TPNHSSFNENRYQSSSITSDRT--IEEEEKIE 91
           PN SSFN  RY+SSSITSD T  +EEEEK E
Sbjct: 61 APNRSSFNGTRYRSSSITSDGTVEVEEEEKTE 92

[Close]

BLAST of MELO3C004718.2 vs. NCBI nr
Match: XP_022925671.1 (uncharacterized protein LOC111433021 [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 2.5e-12
Identity = 55/94 (58.51%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1   MLFRGKCEIR---WISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTR 60
           M F+G  EIR    I+ESRV +EAEDSE++E +++G  RD V+ASS+ PS PKNALI TR
Sbjct: 105 MFFQGNREIRRKSSITESRVRDEAEDSEQNE-ESEGAARDEVFASSA-PSPPKNALILTR 164

Query: 61  CRFTPNHSSFNENRYQSSSITSDRTIEEEEKIER 92
           CR  P+ SSF  NRY+ SSI SDRT EEE + E+
Sbjct: 165 CRSAPHRSSFYCNRYEISSIRSDRTEEEEGEGEK 196

[Close]

BLAST of MELO3C004718.2 vs. NCBI nr
Match: XP_023543942.1 (uncharacterized protein LOC111803666 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 9.5e-12
Identity = 52/87 (59.77%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1   MLFRGKCEIR---WISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTR 60
           M F+GK EIR    I+ESRV +EAEDSE++E +++G  RD V+ASS+ PS PKNALI TR
Sbjct: 105 MFFQGKREIRRKSSITESRVRDEAEDSEQNE-ESEGAARDEVFASSA-PSPPKNALILTR 164

Query: 61  CRFTPNHSSFNENRYQSSSITSDRTIE 85
           CR  P+ SSF  NRY+ SSI SDR  E
Sbjct: 165 CRSAPHRSSFYGNRYEISSIRSDRAEE 189

[Close]

BLAST of MELO3C004718.2 vs. TrEMBL
Match: tr|A0A1S3BN59|A0A1S3BN59_CUCME (uncharacterized protein LOC103491651 OS=Cucumis melo OX=3656 GN=LOC103491651 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.5e-24
Identity = 69/92 (75.00%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1   MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
           MLFRGK EIR ISESRVGNEAEDS         RDRD VYASSS+PS PKNALI TRCR 
Sbjct: 106 MLFRGKREIRRISESRVGNEAEDSXXXXXXXXXRDRDAVYASSSVPSPPKNALILTRCRS 165

Query: 61  TPNHSSFNENRYQSSSITSD-RTIEEEEKIER 92
           TPN SSFN+NRY+SSSITSD  T+EEEEK ER
Sbjct: 166 TPNRSSFNDNRYRSSSITSDGSTVEEEEKTER 197

[Close]

BLAST of MELO3C004718.2 vs. TrEMBL
Match: tr|A0A0A0KK43|A0A0A0KK43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439970 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 60/92 (65.22%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1   MLFRGKCEIRWISESRVGNEAEDSEKDEKDNDGRDRDVVYASSSMPSSPKNALIPTRCRF 60
           ML RGK EIR ISESRVGNEAEDS          D D VY+S S+PS PKNALI +RCR 
Sbjct: 106 MLCRGKREIRRISESRVGNEAEDSXXXXXXXXXXDGDAVYSSFSVPSPPKNALILSRCRS 165

Query: 61  TPNHSSFNENRYQSSSITSDRT--IEEEEKIE 91
            PN SSFN  RY+SSSITSD T  +EEEEK E
Sbjct: 166 APNRSSFNGTRYRSSSITSDGTVEVEEEEKTE 197

The following BLAST results are available for this feature:

BLAST of MELO3C004718.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449922.1	8.3e-24	75.00	PREDICTED: uncharacterized protein LOC103491651 [Cucumis melo]	[more]
KGN48131.1	2.0e-17	65.22	hypothetical protein Csa_6G439970 [Cucumis sativus]	[more]
XP_011658465.1	2.0e-17	65.22	PREDICTED: uncharacterized protein LOC105436016 [Cucumis sativus]	[more]
XP_022925671.1	2.5e-12	58.51	uncharacterized protein LOC111433021 [Cucurbita moschata]	[more]
XP_023543942.1	9.5e-12	59.77	uncharacterized protein LOC111803666 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C004718.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004718.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004718.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BN59\|A0A1S3BN59_CUCME	5.5e-24	75.00	uncharacterized protein LOC103491651 OS=Cucumis melo OX=3656 GN=LOC103491651 PE=...	[more]
tr\|A0A0A0KK43\|A0A0A0KK43_CUCSA	1.3e-17	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439970 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004718.2.1	MELO3C004718.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..37

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004718.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004718.2	Watermelon (97103) v2	medwmbB132
MELO3C004718.2	Wax gourd	medwgoB176
MELO3C004718.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004718.2	Cucumber (Gy14) v1	cgymedB361
MELO3C004718.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C004718.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C004718.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C004718.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004718.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004718.2	Bottle gourd (USVL1VR-Ls)	lsimedB255
MELO3C004718.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004718.2	Watermelon (97103) v1	medwmB167
MELO3C004718.2	Silver-seed gourd	carmedB0000