MELO3C004695.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004695.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	pre-mRNA-splicing factor CWC22 homolog isoform X2
Location	chr12 : 12282060 .. 12284571 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGCTTTCGTCAAATTGTCTGAATTCGTCAACATTCGTCCAAATTCGTCCATTCGTCCATCGCTTCATTTCCTCCACAGCCACCGCGCACGGCTGAGGACAGTCACGTCAAACCATCCATTCATTTTCACCACAGTCACCGTCCATTCATCCATTCGTTTCCTCCACGAAGCTCTTGTATCCCTGGGTTTTGTGAAATTTCAAATTCTTGTGCTTGCTTATACTGGAATGGGATGGGTATAAGGAACTACGGAAATGTTGCTACTCTCCTTCACTAACATATGTGTATGCTTGATGATGTGACGTCCTTTCTCTTGTTAATGCACTTTGTGCAATCTACTTACGTCTTTTTCTTCCTCTTGTTAAATATTTTGATGCTTTAATATTTATCTAAATTGAAATGCTTTAATAATTCCTCTGTGATTTAGTTGTTATTTGCTTTCATTCTTGTTTCCATATGCACTCCCATGTAGAGTTTGTTCTTTTGAGCGCTAGTTTCTTCTGTTTCATCAATTAAAAGTTTTGTTTCTTGTTCAAGCTATATCTTTATCTTCTTTATGAATCTAATTTATGGATTATGGATGTGTGTGGTACAATGTTTTATTACAAGTAACTTCAATCTAGAATAGAAAGAAAGAACAGAAAGCTAATCGTGATTCTCTTTGGTTCGCTTATTACAAGTCTTTGGTTTGCTTATCTTCTTATCTTGTTTATTTAGGAATTTTTGTTTTCCTATAATGCATTAGTCAGTTTTACATACTTGCTTGTTGAGATACGTCAAAACGTGAAAGACTTGTTGTTGGCTTTCAAGCTTGGGAATGGAAAGAGTTCAGAAAAAGACGTTGCAGATTTATCCAAGTATTATTCCACTCCTCATGTTGGGATATTTTTTAGTATCTTCTGTTAGGTACCTAAATAAAGAGGTTGTTAGAAAGTTTATTCTACCATTCAAGTATTATTCTACCCCTACACTATAAGTTTTTAGAAATTTTATCTCTACTTGGTTGTATTTGTTCACATCATTTCTTCTTCTCTTCATTTGAAAGTTTGTGTCTTTTCAACTTTTGTTCCTTTTCATAACATCAATAAGAACATAATTCTATATCAAAGTTGTTAGACTTAGAAGTTAAAGTTCTTAGTTTTAATGTTATTCTCATTGACCTTGACTTCTTTGTTTACTCATGTTGTAGAATTCTTTTGTCTTTGCTCTAAGCACATGGTAATTTCAATTGTTGGGCTGTTGTAATTTACTTTAGTTTATTTTTATGATTTTAGAGTTAGTTGAGTTTAGTTTTAATTTGGTAAGATGTTCTTTAATCATGCGTTATAAGACAAGCTTGTTGATTAAAAGTCTTTATGCAAAGTTTTAGATTTGTACTGTTTATAAGGATTTATGAAAAGGGTAGTTAGGTGGCAACGTAGCATATTCCATGCTTTTGGATAAATTTGGAGGGCCTTACATATTATCTACTTTTGCTTTGTTTGATATGCATCTTCCCTAGAAATCTTACTAAAGACCCCTCCTGCTAATCAGTACTTTTTTGTCTGATGGATGGATTTTAGGTTGGTGGTGAAATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAATTTGCGTGAGTCGTCCAACGCTGTAAAGCTGGTAAGATGTTTTCTTATTTTCTACGTCCTTGTCAACTTTAGATTACAAAAATGACATGACCACAAGTTCAAATTCTTTGTAGGTACACTATGAGCAAATTTAAGATAGAAGTACCAAATTATATAATTGAAATTTTAATTATGCAGGTGTGAGATTTTCTTCTTAATTTTGGTGTCTATTATGCAACTAGAGCTCTCTTGGACTTACATTTGAGTGGAGGTTAGTCACCATTAATAATTTTCTATACATTTGAGTTGGATGGAATATATTTCCCCACTTTAAATTGATTATTCTAGGAAGTCTGAATAGAAGAATTGTGAATGCCGAACAGAATCACATTTATTTCAAGAATAGTTTAACTTTTTGTTTATTCAACCTTTCATAGTATCGTTTTATATGGGTATGTTTTGAGATGATCGGACTACAAACTTTTGAATATTGTTTTTCTTTTTTGCTAAAACTTGCTAAGTTTGATTGTAGGTTGTTGCTTCAAGAATTATTCGGTGAAACTTATTGGAAAGCTTCGTGAAGTATTTAACACTCGAAAAGACGAAATTATTGAGGGTCGAAACATAATTTTAATGTTTAATAGTCCTATAGTTAGTTATTTTATTTATCTTTATAAATTGAGCGTAGTTTGTGGAGAGACATTAATAGCCATACTATTCTTATTCTCTTAC

mRNA sequence

CTCTGCTTTCGTCAAATTGTCTGAATTCGTCAACATTCGTCCAAATTCGTCCATTCGTCCATCGCTTCATTTCCTCCACAGCCACCGCGCACGGCTGAGGACAGTCACGTCAAACCATCCATTCATTTTCACCACAGTCACCGTCCATTCATCCATTCGTTTCCTCCACGAAGCTCTTGTATCCCTGGGTTTTGTGAAATTTCAAATTCTTGTGCTTGCTTATACTGGAATGGGATGGGTATAAGGAACTACGGAAATGTTGCTACTCTCCTTCACTAACATATGTGTATGCTTGATGATGTGACGTCCTTTCTCTTGTTAATGCACTTTGTGCAATCTACTTACGTCTTTTTCTTCCTCTTGTTAAATATTTTGATGCTTTAATATTTATCTAAATTGAAATGCTTTAATAATTCCTCTGTGATTTAGTTGTTATTTGCTTTCATTCTTGTTTCCATATGCACTCCCATGTAGAGTTTGTTCTTTTGAGCGCTAGTTTCTTCTGTTTCATCAATTAAAAGTTTTGTTTCTTGTTCAAGCTATATCTTTATCTTCTTTATGAATCTAATTTATGGATTATGGATGTGTGTGGTACAATGTTTTATTACAAGTAACTTCAATCTAGAATAGAAAGAAAGAACAGAAAGCTAATCGTGATTCTCTTTGGTTCGCTTATTACAAGTCTTTGGTTTGCTTATCTTCTTATCTTGTTTATTTAGGAATTTTTGTTTTCCTATAATGCATTAGTCAGTTTTACATACTTGCTTGTTGAGATACGTCAAAACGTGAAAGACTTGTTGTTGGCTTTCAAGCTTGGGAATGGAAAGAGTTCAGAAAAAGACGTTGCAGATTTATCCAAGTTGGTGGTGAAATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAATTTGCGTGAGTCGTCCAACGCTGTAAAGCTGGTGTGAGATTTTCTTCTTAATTTTGGTGTCTATTATGCAACTAGAGCTCTCTTGGACTTACATTTGAGTGGAGGTTGTTGCTTCAAGAATTATTCGGTGAAACTTATTGGAAAGCTTCGTGAAGTATTTAACACTCGAAAAGACGAAATTATTGAGGGTCGAAACATAATTTTAATGTTTAATAGTCCTATAGTTAGTTATTTTATTTATCTTTATAAATTGAGCGTAGTTTGTGGAGAGACATTAATAGCCATACTATTCTTATTCTCTTAC

Coding sequence (CDS)

ATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAA

Protein sequence

MKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSKWRFMIRIK

Homology

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BLAST of MELO3C004695.2 vs. TrEMBL
Match: tr|A0A0A0L1Y4|A0A0A0L1Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290770 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.8e-04
Identity = 32/46 (69.57%), Postives = 32/46 (69.57%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERG 64
          MDRKYSRESSDED VKGNRRTSRD             NLHREVERG
Sbjct: 1  MDRKYSRESSDEDEVKGNRRTSRDXXXXXXXXXXXXXNLHREVERG 46

The following BLAST results are available for this feature:

BLAST of MELO3C004695.2 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C004695.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C004695.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C004695.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1Y4\|A0A0A0L1Y4_CUCSA	8.8e-04	69.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290770 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004695.2.1	MELO3C004695.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..62

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004695.2	Silver-seed gourd	carmedB0000
MELO3C004695.2	Cucumber (Chinese Long) v3	cucmedB009
MELO3C004695.2	Watermelon (97103) v2	medwmbB129
MELO3C004695.2	Watermelon (97103) v2	medwmbB132
MELO3C004695.2	Wax gourd	medwgoB176
MELO3C004695.2	Cucumber (Gy14) v2	cgybmedB009
MELO3C004695.2	Cucumber (Gy14) v1	cgymedB528
MELO3C004695.2	Cucurbita maxima (Rimu)	cmamedB425
MELO3C004695.2	Cucurbita moschata (Rifu)	cmomedB400
MELO3C004695.2	Cucurbita pepo (Zucchini)	cpemedB033
MELO3C004695.2	Wild cucumber (PI 183967)	cpimedB011
MELO3C004695.2	Cucumber (Chinese Long) v2	cumedB010
MELO3C004695.2	Bottle gourd (USVL1VR-Ls)	lsimedB257
MELO3C004695.2	Watermelon (Charleston Gray)	medwcgB129
MELO3C004695.2	Watermelon (Charleston Gray)	medwcgB133
MELO3C004695.2	Watermelon (97103) v1	medwmB159
MELO3C004695.2	Watermelon (97103) v1	medwmB167