MELO3C004686 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004686
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon gag protein
Location	chr12 : 12508164 .. 12508320 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAATCTACCGAGAAAGGACAAAGCCAAAGATGAAGAACTCCTTAAAATCTACAAGAAGGTGGAGATAAACCTTCCTTTACTTAGTGTGGTACAACAAATTCCAAAGTATGCCAAGTTCCTCAAGGAGCTTTGTATAAAGAAGAGAAGACATTAA

mRNA sequence

GTTAAATCTACCGAGAAAGGACAAAGCCAAAGATGAAGAACTCCTTAAAATCTACAAGAAGGTGGAGATAAACCTTCCTTTACTTAGTGTGGTACAACAAATTCCAAAGTATGCCAAGTTCCTCAAGGAGCTTTGTATAAAGAAGAGAAGACATTAA

Coding sequence (CDS)

GTTAAATCTACCGAGAAAGGACAAAGCCAAAGATGAAGAACTCCTTAAAATCTACAAGAAGGTGGAGATAAACCTTCCTTTACTTAGTGTGGTACAACAAATTCCAAAGTATGCCAAGTTCCTCAAGGAGCTTTGTATAAAGAAGAGAAGACATTAA

Protein sequence

LNLPRKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRRH*

Homology

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BLAST of MELO3C004686 vs. TrEMBL
Match: Q2AA34_ASPOF (F7F22.15, related OS=Asparagus officinalis GN=20.t00032 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.8e-08
Identity = 27/46 (58.70%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 5   RKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           RK   ++E++L+ +K+V++N+PLL V++QIP YAKFLKELC KKRR
Sbjct: 225 RKHSPQEEKILETFKQVKVNIPLLDVIEQIPSYAKFLKELCTKKRR 270

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BLAST of MELO3C004686 vs. TrEMBL
Match: A0A151QXB4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_044092 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-08
Identity = 26/41 (63.41%), Postives = 37/41 (90.24%), Query Frame = 1


Query: 10  KDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           KD+ELL+ ++KVE+N+PLL  ++QIP+YAKFLKE+C +KRR
Sbjct: 114 KDKELLETFRKVEVNIPLLDAIKQIPRYAKFLKEICTRKRR 154

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BLAST of MELO3C004686 vs. TrEMBL
Match: A0A151QLU9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_048523 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-08
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1   LNLPRKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           L   + +  KD+ELL+ ++KVE+N+PLL  ++QIP+YAKFLKE+C  KRR
Sbjct: 417 LQTRKAEAEKDKELLETFRKVEVNIPLLDAIKQIPRYAKFLKEMCTHKRR 466

[Close]

BLAST of MELO3C004686 vs. TrEMBL
Match: A0A151UGQ6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_049209 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-08
Identity = 27/50 (54.00%), Postives = 39/50 (78.00%), Query Frame = 1


Query: 1   LNLPRKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           L   + +  KD+ELL+ ++KVE+N+PLL  ++QIP+YAKFLKE+C  KRR
Sbjct: 299 LQTRKAEAEKDKELLETFRKVEVNIPLLDAIKQIPRYAKFLKEMCTHKRR 348

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BLAST of MELO3C004686 vs. TrEMBL
Match: A0A0J8BAH8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g180100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.4e-07
Identity = 24/45 (53.33%), Postives = 39/45 (86.67%), Query Frame = 1


Query: 6   KDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           K + +++E+L +++KVE+N+PLL V++Q+P+YAKFLK+LC  KRR
Sbjct: 415 KKREQEKEVLDVFRKVEVNIPLLEVIRQVPRYAKFLKDLCTNKRR 459

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BLAST of MELO3C004686 vs. NCBI nr
Match: gi|659131368|ref|XP_008465649.1| (PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 2.2e-09
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 5   RKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           +K+  K EELLK++KKV+INLPLL  +QQ+P+YAKFLKELC  KR+
Sbjct: 262 KKETPKKEELLKMFKKVQINLPLLDAIQQVPRYAKFLKELCTNKRK 307

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BLAST of MELO3C004686 vs. NCBI nr
Match: gi|950985101|ref|XP_014503255.1| (PREDICTED: uncharacterized protein LOC106763597 [Vigna radiata var. radiata])

HSP 1 Score: 67.4 bits (163), Expect = 8.4e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 1


Query: 4   PRKDKAK--DEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           PR  K +  D+E+L I+KKVEIN+PLL VV+QIPKYAKFLKE+C  +RR
Sbjct: 118 PRNKKMEELDQEILNIFKKVEINIPLLDVVKQIPKYAKFLKEICTNRRR 166

[Close]

BLAST of MELO3C004686 vs. NCBI nr
Match: gi|951056395|ref|XP_014521752.1| (PREDICTED: uncharacterized protein LOC106778319 [Vigna radiata var. radiata])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 5   RKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           +K +  D+E+L I+KKVEIN+PLL VV+QIPKYAKFLKE+C  +RR
Sbjct: 212 KKIEELDQEILNIFKKVEINIPLLDVVKQIPKYAKFLKEICTNRRR 257

[Close]

BLAST of MELO3C004686 vs. NCBI nr
Match: gi|950984597|ref|XP_014503122.1| (PREDICTED: uncharacterized protein LOC106763446 [Vigna radiata var. radiata])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-08
Identity = 30/46 (65.22%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 5   RKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           +K +  D+E+L  +KKVEIN+PLL VV+QIPKYAKFLKE+CI +RR
Sbjct: 348 KKMEELDQEILNTFKKVEINIPLLDVVKQIPKYAKFLKEICINRRR 393

[Close]

BLAST of MELO3C004686 vs. NCBI nr
Match: gi|951066486|ref|XP_014523975.1| (PREDICTED: uncharacterized protein LOC106780226 [Vigna radiata var. radiata])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 29/46 (63.04%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 5   RKDKAKDEELLKIYKKVEINLPLLSVVQQIPKYAKFLKELCIKKRR 51
           +K +  D+E+L I+KKVEIN+PLL VV+QIPKY KFLKE+C  +RR
Sbjct: 304 KKTEELDQEILNIFKKVEINIPLLDVVKQIPKYTKFLKEICTNRRR 349

The following BLAST results are available for this feature:

BLAST of MELO3C004686 vs. TrEMBL


Match Name	E-value	Identity	Description
Q2AA34_ASPOF	3.8e-08	58.70	F7F22.15, related OS=Asparagus officinalis GN=20.t00032 PE=4 SV=1	[more]
A0A151QXB4_CAJCA	5.0e-08	63.41	Uncharacterized protein OS=Cajanus cajan GN=KK1_044092 PE=4 SV=1	[more]
A0A151QLU9_CAJCA	6.5e-08	54.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_048523 PE=4 SV=1	[more]
A0A151UGQ6_CAJCA	6.5e-08	54.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_049209 PE=4 SV=1	[more]
A0A0J8BAH8_BETVU	1.4e-07	53.33	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g180100 PE=4 S...	[more]

BLAST of MELO3C004686 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131368\|ref\|XP_008465649.1\|	2.2e-09	65.22	PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]	[more]
gi\|950985101\|ref\|XP_014503255.1\|	8.4e-09	65.31	PREDICTED: uncharacterized protein LOC106763597 [Vigna radiata var. radiata]	[more]
gi\|951056395\|ref\|XP_014521752.1\|	1.1e-08	65.22	PREDICTED: uncharacterized protein LOC106778319 [Vigna radiata var. radiata]	[more]
gi\|950984597\|ref\|XP_014503122.1\|	1.1e-08	65.22	PREDICTED: uncharacterized protein LOC106763446 [Vigna radiata var. radiata]	[more]
gi\|951066486\|ref\|XP_014523975.1\|	1.9e-08	63.04	PREDICTED: uncharacterized protein LOC106780226 [Vigna radiata var. radiata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004686T1	MELO3C004686T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004686	Cucumber (Chinese Long) v3	cucmeB010
MELO3C004686	Cucumber (Chinese Long) v3	cucmeB023
MELO3C004686	Watermelon (97103) v2	mewmbB137
MELO3C004686	Watermelon (97103) v2	mewmbB143
MELO3C004686	Wax gourd	mewgoB174
MELO3C004686	Cucumber (Gy14) v1	cgymeB529
MELO3C004686	Wild cucumber (PI 183967)	cpimeB011
MELO3C004686	Cucumber (Chinese Long) v2	cumeB015
MELO3C004686	Watermelon (Charleston Gray)	mewcgB135
MELO3C004686	Cucurbita pepo (Zucchini)	cpemeB028
MELO3C004686	Bottle gourd (USVL1VR-Ls)	lsimeB246
MELO3C004686	Cucumber (Gy14) v2	cgybmeB010