MELO3C004678 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004678
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTraB family protein
Locationchr12 : 12619477 .. 12620004 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCGTAAGTGCAATCCTACAATGCATTTTCAGATATTTTTCTTATCTATGTGAAAGAGAGAAAGAGTCTAATATCTCTCTTGATTTTCATGGTTAGGTTCCGCATTTGTTTTTGCAATCACCATTTTTCAATTCAACATTCACAATTACAAAGTGCTTAATATAGTTGTATTTGTAGCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

mRNA sequence

GAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

Coding sequence (CDS)

GAATCCGATGGAAATGGTAGTTCTTTGCAGCTCTATGAGAAGCTTAGTTTTTCTTATTCATCCCTCCTTCAACCTCTCATTCATGAACGAGATACCCACCTTGCATTGTCTCTAAAGTGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTTGAGGTGATTGGAAGAGACCATATGAACGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTAGAGAAGGTAATTCCAATGGCTTTGTTAGCAATCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATTTTATGGGTTTTATATGAACAATTAAAATAA

Protein sequence

ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMNGVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK*
Homology
[Close]
BLAST of MELO3C004678 vs. TrEMBL
Match: A0A0A0L5T2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.1e-50
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 162 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 221

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 222 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 278

[Close]
BLAST of MELO3C004678 vs. TrEMBL
Match: A0A0D2RQG0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           E +    + QLYE+LSFSY SLLQPL+HERDT+LA SLK SKAVNK K VV VIG+ HMN
Sbjct: 222 EQNYENDTFQLYERLSFSYPSLLQPLVHERDTYLAWSLKRSKAVNKCKTVVGVIGKGHMN 281

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYA+ SDQGNLRFRDLAGK   E  SNG+V  LLKSL RDT+IG++LW LYEQ+K
Sbjct: 282 GVIYALVSDQGNLRFRDLAGKTPSEAESNGWVQRLLKSLARDTLIGILLWALYEQIK 338

[Close]
BLAST of MELO3C004678 vs. TrEMBL
Match: A0A0D2Q3D2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           E +    + QLYE+LSFSY SLLQPL+HERDT+LA SLK SKAVNK K VV VIG+ HMN
Sbjct: 259 EQNYENDTFQLYERLSFSYPSLLQPLVHERDTYLAWSLKRSKAVNKCKTVVGVIGKGHMN 318

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYA+ SDQGNLRFRDLAGK   E  SNG+V  LLKSL RDT+IG++LW LYEQ+K
Sbjct: 319 GVIYALVSDQGNLRFRDLAGKTPSEAESNGWVQRLLKSLARDTLIGILLWALYEQIK 375

[Close]
BLAST of MELO3C004678 vs. TrEMBL
Match: A0A0D2SS56_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.8e-38
Identity = 82/117 (70.09%), Postives = 94/117 (80.34%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           E +    + QLYE+LSFSY SLLQPL+HERDT+LA SLK SKAVNK K VV VIG+ HMN
Sbjct: 199 EQNYENDTFQLYERLSFSYPSLLQPLVHERDTYLAWSLKRSKAVNKCKTVVGVIGKGHMN 258

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYA+ SDQGNLRFRDLAGK   E  SNG+V  LLKSL RDT+IG++LW LYEQ+K
Sbjct: 259 GVIYALVSDQGNLRFRDLAGKTPSEAESNGWVQRLLKSLARDTLIGILLWALYEQIK 315

[Close]
BLAST of MELO3C004678 vs. TrEMBL
Match: A0A0B0MT44_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27613 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.4e-37
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           E +    + QLYE LSFSY SLLQPL+HERDT+LA SLK SKAVNK K VV VIG+ HMN
Sbjct: 91  EQNYENDTFQLYENLSFSYPSLLQPLVHERDTYLAWSLKRSKAVNKCKTVVGVIGKGHMN 150

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYA+ SDQGNLRFRDLAGK   E  SNG+V  LLKSLV DT+IG++LW LYEQ+K
Sbjct: 151 GVIYALVSDQGNLRFRDLAGKTPSETESNGWVQRLLKSLVSDTLIGILLWALYEQIK 207

[Close]
BLAST of MELO3C004678 vs. TAIR10
Match: AT5G52030.2 (AT5G52030.2 TraB family protein)

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-35
Identity = 77/120 (64.17%), Postives = 87/120 (72.50%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           E+D N  SLQLYE+LSFSY +LL PLIHERDT+LA SLK SKAVN  K VV VIG+ HMN
Sbjct: 274 ETDENSGSLQLYERLSFSYPALLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMN 333

Query: 61  GVIYAITSDQGNLRFRDLAGK-----KAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQ 116
           GVIYA+ SD G+LRFRDL G+           SNG++  +LKS VRDTIIG +LW LYEQ
Sbjct: 334 GVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELYEQ 393

[Close]
BLAST of MELO3C004678 vs. NCBI nr
Match: gi|659077362|ref|XP_008439166.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 258 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 317

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 318 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 374

[Close]
BLAST of MELO3C004678 vs. NCBI nr
Match: gi|659077364|ref|XP_008439167.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.1e-51
Identity = 109/117 (93.16%), Postives = 111/117 (94.87%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKLSFSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 127 ESDGNGSSLQLYEKLSFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 186

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLKSLVRDTIIGVILWVLYEQLK
Sbjct: 187 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLK 243

[Close]
BLAST of MELO3C004678 vs. NCBI nr
Match: gi|449446067|ref|XP_004140793.1| (PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-50
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 280 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 339

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 340 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 396

[Close]
BLAST of MELO3C004678 vs. NCBI nr
Match: gi|778679467|ref|XP_011651134.1| (PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-50
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 127 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 186

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 187 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 243

[Close]
BLAST of MELO3C004678 vs. NCBI nr
Match: gi|700202207|gb|KGN57340.1| (hypothetical protein Csa_3G180280 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 5.9e-50
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 1 

Query: 1   ESDGNGSSLQLYEKLSFSYSSLLQPLIHERDTHLALSLKCSKAVNKSKRVVEVIGRDHMN 60
           ESDGNGSSLQLYEKL FSY SLLQPLIHERDT+LA SLK SKAVNKSKRVV VIGR HMN
Sbjct: 162 ESDGNGSSLQLYEKLGFSYPSLLQPLIHERDTYLAWSLKRSKAVNKSKRVVGVIGRGHMN 221

Query: 61  GVIYAITSDQGNLRFRDLAGKKAREGNSNGFVSNLLKSLVRDTIIGVILWVLYEQLK 118
           GVIYAITSDQGNLRFRDLAGKKA EGNSNGFVS+LLK LVRDTIIGVI+WVLYEQLK
Sbjct: 222 GVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLK 278

The following BLAST results are available for this feature:
BLAST of MELO3C004678 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5T2_CUCSA4.1e-5090.60Uncharacterized protein OS=Cucumis sativus GN=Csa_3G180280 PE=4 SV=1[more]
A0A0D2RQG0_GOSRA2.8e-3870.09Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1[more]
A0A0D2Q3D2_GOSRA2.8e-3870.09Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1[more]
A0A0D2SS56_GOSRA2.8e-3870.09Uncharacterized protein OS=Gossypium raimondii GN=B456_006G046300 PE=4 SV=1[more]
A0A0B0MT44_GOSAR1.4e-3770.09Uncharacterized protein OS=Gossypium arboreum GN=F383_27613 PE=4 SV=1[more]
BLAST of MELO3C004678 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G52030.21.1e-3564.17 TraB family protein[more]
BLAST of MELO3C004678 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077362|ref|XP_008439166.1|3.1e-5193.16PREDICTED: traB domain-containing protein isoform X1 [Cucumis melo][more]
gi|659077364|ref|XP_008439167.1|3.1e-5193.16PREDICTED: traB domain-containing protein isoform X2 [Cucumis melo][more]
gi|449446067|ref|XP_004140793.1|5.9e-5090.60PREDICTED: traB domain-containing protein isoform X1 [Cucumis sativus][more]
gi|778679467|ref|XP_011651134.1|5.9e-5090.60PREDICTED: traB domain-containing protein isoform X2 [Cucumis sativus][more]
gi|700202207|gb|KGN57340.1|5.9e-5090.60hypothetical protein Csa_3G180280 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011991Winged helix-turn-helix DNA-binding domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004678T1MELO3C004678T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 40..105
score: 1.
NoneNo IPR availablePANTHERPTHR21530PHEROMONE SHUTDOWN PROTEINcoord: 1..117
score: 9.8
NoneNo IPR availablePANTHERPTHR21530:SF1TRAB FAMILY PROTEINcoord: 1..117
score: 9.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004678Watermelon (97103) v2mewmbB143
MELO3C004678Wax gourdmewgoB174
MELO3C004678Cucumber (Gy14) v1cgymeB529
MELO3C004678Wild cucumber (PI 183967)cpimeB011
MELO3C004678Cucumber (Chinese Long) v2cumeB015
MELO3C004678Cucurbita pepo (Zucchini)cpemeB028
MELO3C004678Cucumber (Gy14) v2cgybmeB010
MELO3C004678Cucumber (Chinese Long) v3cucmeB010