MELO3C004674 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004674
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-Pol polyprotein/retrotransposon, putative
Locationchr12 : 12644668 .. 12645255 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAAGAATACTCAGCATTCTTGTAGTGAAGGTTGAGTTTGGAAAGAAAGATAAAGCTAAGAGCTCCAAAGGTAAAGAAAAATTGGATGAATCAAAGGAAGTTTGAGAAAATAATTGAGACATAAAATGTTGAAAATGCCAAGGGATTGGGTATATTGCTCGTGATTGTCCAAACAAGAGAACCATGATCATTAAAAATGGTGAAGTTGTCACCGATGGAGAAAACAGTGAGAAAGATGAGCTAATTGAAGAAGAAATTAAAGAAAATGAGGAAGAACTAGAAGATGGGAGTAAATTGACACTTGTTACAAGAAGGCTTCTTAGTGCTCAAGTTAAGGAAAATGATATGGAAGATCAAAGAGATAATCTTCTCCACTCAAGGTGTTTAGTTAATGGGATGCCTTGTAGTGTTGTAATAGATAATGAAAGTTGTACGAAAGTTTTTAGTATATTTCTTATCGTACAATTGCAAATTCCAACTCAACATCATCCTAAGCCTTACAACTTTCAATGGCTCAATGATAGTGGAAACAATGAAGGTAGTTTCTCAAGCTTTGATTTCTTTTACCTTGGAAAAGTATAA

mRNA sequence

ATGGCATCAAGAATACTCAGCATTCTTGTAGTGAAGGTTGAGTTTGGAAAGAAAGATAAAGCTAAGAGCTCCAAAGGGATTGGGTATATTGCTCGTGATTGTCCAAACAAGAGAACCATGATCATTAAAAATGGTGAAGTTGTCACCGATGGAGAAAACAGTGAGAAAGATGAGCTAATTGAAGAAGAAATTAAAGAAAATGAGGAAGAACTAGAAGATGGGAGTAAATTGACACTTGTTACAAGAAGGCTTCTTAGTGCTCAAGTTAAGGAAAATGATATGGAAGATCAAAGAGATAATCTTCTCCACTCAAGGTGTTTAGTTAATGGGATGCCTTGTAGTGTTGTAATAGATAATGAAAGTTGTACGAAAGTTTTTAGTATATTTCTTATCGTACAATTGCAAATTCCAACTCAACATCATCCTAAGCCTTACAACTTTCAATGGCTCAATGATAGTGGAAACAATGAAGGTAGTTTCTCAAGCTTTGATTTCTTTTACCTTGGAAAAGTATAA

Coding sequence (CDS)

ATGGCATCAAGAATACTCAGCATTCTTGTAGTGAAGGTTGAGTTTGGAAAGAAAGATAAAGCTAAGAGCTCCAAAGGGATTGGGTATATTGCTCGTGATTGTCCAAACAAGAGAACCATGATCATTAAAAATGGTGAAGTTGTCACCGATGGAGAAAACAGTGAGAAAGATGAGCTAATTGAAGAAGAAATTAAAGAAAATGAGGAAGAACTAGAAGATGGGAGTAAATTGACACTTGTTACAAGAAGGCTTCTTAGTGCTCAAGTTAAGGAAAATGATATGGAAGATCAAAGAGATAATCTTCTCCACTCAAGGTGTTTAGTTAATGGGATGCCTTGTAGTGTTGTAATAGATAATGAAAGTTGTACGAAAGTTTTTAGTATATTTCTTATCGTACAATTGCAAATTCCAACTCAACATCATCCTAAGCCTTACAACTTTCAATGGCTCAATGATAGTGGAAACAATGAAGGTAGTTTCTCAAGCTTTGATTTCTTTTACCTTGGAAAAGTATAA

Protein sequence

MASRILSILVVKVEFGKKDKAKSSKGIGYIARDCPNKRTMIIKNGEVVTDGENSEKDELIEEEIKENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKVFSIFLIVQLQIPTQHHPKPYNFQWLNDSGNNEGSFSSFDFFYLGKV*
Homology
[Close]
BLAST of MELO3C004674 vs. TrEMBL
Match: A5AG41_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037350 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.9e-26
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 26  GIGYIARDCPNKRTMIIK-NGEVVTDGENSEKDEL--IEEEIKENEEELEDGSKLTLVTR 85
           G+G+IA  CPNKRTMI   +GEV T+ E  + D++  +E+   +N E   +G   +LV R
Sbjct: 271 GVGHIASQCPNKRTMIAHVDGEVETESEEDD-DQMPSLEDSCDDNVEYPVEGE--SLVAR 330

Query: 86  RLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKVFSIFLIVQLQIPTQHHP 145
           R LSAQVK++DME QR+N+ H+RC +N   CS++ID  SC  V S  L+ +L +PT  HP
Sbjct: 331 RALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEKLNLPTLKHP 390

Query: 146 KPYNFQWLNDSG 155
           +PY  QWLND G
Sbjct: 391 RPYKLQWLNDCG 399

[Close]
BLAST of MELO3C004674 vs. TrEMBL
Match: A5C070_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041099 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.5e-24
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 1 

Query: 8   ILVVKVEFGKKDKAKSSKGIGYIARDCPNKRTMIIK-NGEVVTDGENSEKD-ELIEEEIK 67
           +   K E  K+     +   G+IA  CPNKRTMI + +GEV T  E  +     +E+   
Sbjct: 233 VFTSKXEPPKRRDEAPNVNKGHIASQCPNKRTMIARVDGEVETXSEEDDDQMSXLEDACD 292

Query: 68  ENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKV 127
           +N E   +G   +LV RR LSAQVKE+DME QR+N  H+RC +N   CS++ID  SCT V
Sbjct: 293 DNVEYPXEGE--SLVARRALSAQVKEDDMEQQRENXFHTRCHINNKVCSMIIDGGSCTNV 352

Query: 128 FSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            S  L+ +L +PT  +P+PY   WLND G
Sbjct: 353 ASTTLVEKLNLPTLKYPRPYKLXWLNDCG 379

[Close]
BLAST of MELO3C004674 vs. TrEMBL
Match: A5ARG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003506 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.3e-24
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 12  KVEFGKKDKAKSSKGIGYIARDCPNKRTMIIK-NGEVVTDGENSEKDEL--IEEEIKENE 71
           K+E  K+     +   G IA  CPNKRTMI + +GEV T+ E  + D++  +E+   +N 
Sbjct: 16  KIEPPKRRDEAPNINKGRIASQCPNKRTMITRVDGEVETESEEDD-DQMASLEDACDDNV 75

Query: 72  EELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVID-----NESCT 131
           E   +G   +LV RR LSAQVKE+DME QR+N+ H+RC +N   CS++ID       SCT
Sbjct: 76  EYPMEGE--SLVARRXLSAQVKEDDMEQQRENIFHTRCHINNKVCSMIIDGGVGEGRSCT 135

Query: 132 KVFSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            V S  L+  L +PT  HPKPY  QWLND G
Sbjct: 136 NVASTTLVEILNLPTLKHPKPYKLQWLNDCG 163

[Close]
BLAST of MELO3C004674 vs. TrEMBL
Match: A0A0B2PC14_GLYSO (Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_046828 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.4e-24
Identity = 58/151 (38.41%), Postives = 94/151 (62.25%), Query Frame = 1 

Query: 6   LSILVVKVEFGKKDKAKSSKGIGYIARDCPNKRTMIIKNGEVVT--DGENSEKDELIEEE 65
           + +L+++    + ++    +G+G+ A +CPNKR+M++++GE ++  D E  E+ E +EEE
Sbjct: 158 MDVLMIQANIEEDEECFKCQGLGHYAYECPNKRSMVLRDGEYISESDVEEEEESEYVEEE 217

Query: 66  IKENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCT 125
                 E  +G  L +  RRLL  Q+K  + E QR+N+ H+RCL+NG  C V+ID  SCT
Sbjct: 218 ------ETPEGDLLMI--RRLLGGQLKHEE-ESQRENIFHTRCLINGKVCMVIIDGGSCT 277

Query: 126 KVFSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            V S  L+ +L + T+ HP+PY  QWL+  G
Sbjct: 278 NVASARLVSKLNLATKPHPRPYKLQWLSKDG 299

[Close]
BLAST of MELO3C004674 vs. TrEMBL
Match: E7BQD7_PEA (Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.6e-23
Identity = 60/141 (42.55%), Postives = 84/141 (59.57%), Query Frame = 1 

Query: 13  VEFGKKDKAKSSKGIGYIARDCPNKRTMIIKNGEVVTDGENSEKDELIEEEIKENEEELE 72
           V   K  K    +G G+IA  CP KRTM+++  E + + E+ + DE  EEEI   +    
Sbjct: 287 VSTNKSVKCFKCQGQGHIASQCPTKRTMLMEENEGIVEEEDGDYDEEFEEEIPSGD---- 346

Query: 73  DGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKVFSIFLIV 132
                 L+ RR+L +Q+KE D   QR+NL H+RC V G  CS++ID  SCT V S  L+ 
Sbjct: 347 -----LLMVRRMLGSQIKEEDT-GQRENLFHTRCFVQGKVCSLIIDGGSCTNVASTRLVS 406

Query: 133 QLQIPTQHHPKPYNFQWLNDS 154
           +L++ T+ HPKPY  QWLN+S
Sbjct: 407 KLKLETKPHPKPYKLQWLNES 417

[Close]
BLAST of MELO3C004674 vs. NCBI nr
Match: gi|147765719|emb|CAN77900.1| (hypothetical protein VITISV_037350 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 26  GIGYIARDCPNKRTMIIK-NGEVVTDGENSEKDEL--IEEEIKENEEELEDGSKLTLVTR 85
           G+G+IA  CPNKRTMI   +GEV T+ E  + D++  +E+   +N E   +G   +LV R
Sbjct: 271 GVGHIASQCPNKRTMIAHVDGEVETESEEDD-DQMPSLEDSCDDNVEYPVEGE--SLVAR 330

Query: 86  RLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKVFSIFLIVQLQIPTQHHP 145
           R LSAQVK++DME QR+N+ H+RC +N   CS++ID  SC  V S  L+ +L +PT  HP
Sbjct: 331 RALSAQVKKDDMEQQRENIFHTRCHINNKVCSMIIDGGSCANVASTTLVEKLNLPTLKHP 390

Query: 146 KPYNFQWLNDSG 155
           +PY  QWLND G
Sbjct: 391 RPYKLQWLNDCG 399

[Close]
BLAST of MELO3C004674 vs. NCBI nr
Match: gi|1000948329|ref|XP_015580307.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261987, partial [Ricinus communis])

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 1 

Query: 12  KVEFGKKDKAKSSK------------GIGYIARDCPNKRTMIIKNGEVVTDGENSEKDEL 71
           K E G K+K ++              G G+ ARDCPNKRTMI ++G V ++ EN   DE 
Sbjct: 176 KNEIGSKNKVENQANQSRSLKCFKCLGHGHYARDCPNKRTMIFRDGIVESESENENDDEN 235

Query: 72  IEEEIKENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDN 131
            +    E+  ++E      LV +R LS Q K ++  +QR+NL H+ CL+    C++++D+
Sbjct: 236 DDMPTLEDVSDVEYAKGDVLVVQRTLSLQCKHDEHGEQRENLFHTHCLIANKLCNMIVDS 295

Query: 132 ESCTKVFSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            SCT V S  L+ +L++PT  HP+PY  QWLNDSG
Sbjct: 296 GSCTNVASTLLVEKLKLPTTKHPRPYKLQWLNDSG 330

[Close]
BLAST of MELO3C004674 vs. NCBI nr
Match: gi|1000963681|ref|XP_015575421.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [Ricinus communis])

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 1 

Query: 12  KVEFGKKDKAKSSK------------GIGYIARDCPNKRTMIIKNGEVVTDGENSEKDEL 71
           K E G K+K ++              G G+ ARDCPNKRTMI+++G V ++ EN   DE 
Sbjct: 171 KNEIGSKNKVENQANQSRSLKCFKCLGHGHYARDCPNKRTMIVRDGIVESESENENDDEN 230

Query: 72  IEEEIKENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDN 131
            +    E+  ++E      LV +R LS   K ++  +Q +NL H+ CL+    C++++D+
Sbjct: 231 DDMPTLEDVSDVEYAKGDMLVVQRTLSLHCKHDEHREQHENLFHTHCLIANKLCNMIVDS 290

Query: 132 ESCTKVFSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            SCT V S  L+ +L++PT  HP+PY  QWLNDSG
Sbjct: 291 GSCTNVASTLLVEKLKLPTTKHPRPYKLQWLNDSG 325

[Close]
BLAST of MELO3C004674 vs. NCBI nr
Match: gi|147822421|emb|CAN68499.1| (hypothetical protein VITISV_041099 [Vitis vinifera])

HSP 1 Score: 120.2 bits (300), Expect = 3.6e-24
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 1 

Query: 8   ILVVKVEFGKKDKAKSSKGIGYIARDCPNKRTMIIK-NGEVVTDGENSEKD-ELIEEEIK 67
           +   K E  K+     +   G+IA  CPNKRTMI + +GEV T  E  +     +E+   
Sbjct: 233 VFTSKXEPPKRRDEAPNVNKGHIASQCPNKRTMIARVDGEVETXSEEDDDQMSXLEDACD 292

Query: 68  ENEEELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVIDNESCTKV 127
           +N E   +G   +LV RR LSAQVKE+DME QR+N  H+RC +N   CS++ID  SCT V
Sbjct: 293 DNVEYPXEGE--SLVARRALSAQVKEDDMEQQRENXFHTRCHINNKVCSMIIDGGSCTNV 352

Query: 128 FSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            S  L+ +L +PT  +P+PY   WLND G
Sbjct: 353 ASTTLVEKLNLPTLKYPRPYKLXWLNDCG 379

[Close]
BLAST of MELO3C004674 vs. NCBI nr
Match: gi|147857530|emb|CAN80356.1| (hypothetical protein VITISV_003506 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 4.7e-24
Identity = 69/151 (45.70%), Postives = 92/151 (60.93%), Query Frame = 1 

Query: 12  KVEFGKKDKAKSSKGIGYIARDCPNKRTMIIK-NGEVVTDGENSEKDEL--IEEEIKENE 71
           K+E  K+     +   G IA  CPNKRTMI + +GEV T+ E  + D++  +E+   +N 
Sbjct: 16  KIEPPKRRDEAPNINKGRIASQCPNKRTMITRVDGEVETESEEDD-DQMASLEDACDDNV 75

Query: 72  EELEDGSKLTLVTRRLLSAQVKENDMEDQRDNLLHSRCLVNGMPCSVVID-----NESCT 131
           E   +G   +LV RR LSAQVKE+DME QR+N+ H+RC +N   CS++ID       SCT
Sbjct: 76  EYPMEGE--SLVARRXLSAQVKEDDMEQQRENIFHTRCHINNKVCSMIIDGGVGEGRSCT 135

Query: 132 KVFSIFLIVQLQIPTQHHPKPYNFQWLNDSG 155
            V S  L+  L +PT  HPKPY  QWLND G
Sbjct: 136 NVASTTLVEILNLPTLKHPKPYKLQWLNDCG 163

The following BLAST results are available for this feature:
BLAST of MELO3C004674 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AG41_VITVI7.9e-2648.48Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037350 PE=4 SV=1[more]
A5C070_VITVI2.5e-2443.62Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041099 PE=4 SV=1[more]
A5ARG3_VITVI3.3e-2445.70Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_003506 PE=4 SV=1[more]
A0A0B2PC14_GLYSO7.4e-2438.41Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_046828 PE=4 SV=1[more]
E7BQD7_PEA1.6e-2342.55Mutant gag-pol polyprotein OS=Pisum sativum PE=4 SV=1[more]
BLAST of MELO3C004674 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147765719|emb|CAN77900.1|1.1e-2548.48hypothetical protein VITISV_037350 [Vitis vinifera][more]
gi|1000948329|ref|XP_015580307.1|2.5e-2540.00PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261987, partial [R... [more]
gi|1000963681|ref|XP_015575421.1|1.2e-2438.71PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [R... [more]
gi|147822421|emb|CAN68499.1|3.6e-2443.62hypothetical protein VITISV_041099 [Vitis vinifera][more]
gi|147857530|emb|CAN80356.1|4.7e-2445.70hypothetical protein VITISV_003506 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004674T1MELO3C004674T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004674Cucumber (Chinese Long) v3cucmeB010
MELO3C004674Watermelon (97103) v2mewmbB143
MELO3C004674Wax gourdmewgoB174
MELO3C004674Cucumber (Gy14) v1cgymeB529
MELO3C004674Wild cucumber (PI 183967)cpimeB011
MELO3C004674Cucumber (Chinese Long) v2cumeB015
MELO3C004674Cucurbita pepo (Zucchini)cpemeB028
MELO3C004674Cucumber (Gy14) v2cgybmeB010