MELO3C004673 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004673
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionMajor DNA-binding protein
Locationchr12 : 12707824 .. 12707991 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACAAGGTGTTAAGGTCTTGGTGGGAGGTAAACTTGAAACCAAAATGAAGGATCGGGAAGAGCTCCATAGTAAAGTTGATGATGTGGCTCTCTCCGTGGAAAAGAGCAAGGAAAAGGGTAAAGAAAAGACCTTTAAGGAGTTTTGCGATGAGGTCACAAAATAA

mRNA sequence

ATGGCACAAGGTGTTAAGGTCTTGGTGGGAGGTAAACTTGAAACCAAAATGAAGGATCGGGAAGAGCTCCATAGTAAAGTTGATGATGTGGCTCTCTCCGTGGAAAAGAGCAAGGAAAAGGGTAAAGAAAAGACCTTTAAGGAGTTTTGCGATGAGGTCACAAAATAA

Coding sequence (CDS)

ATGGCACAAGGTGTTAAGGTCTTGGTGGGAGGTAAACTTGAAACCAAAATGAAGGATCGGGAAGAGCTCCATAGTAAAGTTGATGATGTGGCTCTCTCCGTGGAAAAGAGCAAGGAAAAGGGTAAAGAAAAGACCTTTAAGGAGTTTTGCGATGAGGTCACAAAATAA

Protein sequence

MAQGVKVLVGGKLETKMKDREELHSKVDDVALSVEKSKEKGKEKTFKEFCDEVTK*
Homology
[Close]
BLAST of MELO3C004673 vs. TrEMBL
Match: A0A0A0LNF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-06
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 2  AQGVKVLVGGKLETKMKDREELHSKVDDVALSVEKSKEKGKEKTFKEFCDEVTK 56
          A G+K L   K ET +++ EELHSK D+VALSVEK KEK KEK  +E  +E+ K
Sbjct: 11 AHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEK 64

[Close]
BLAST of MELO3C004673 vs. NCBI nr
Match: gi|700206372|gb|KGN61491.1| (hypothetical protein Csa_2G145900 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 3.2e-06
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 2  AQGVKVLVGGKLETKMKDREELHSKVDDVALSVEKSKEKGKEKTFKEFCDEVTK 56
          A G+K L   K ET +++ EELHSK D+VALSVEK KEK KEK  +E  +E+ K
Sbjct: 11 AHGIKALAQEKQETNLREWEELHSKDDEVALSVEKDKEKEKEKGDQEIAEELEK 64

[Close]
BLAST of MELO3C004673 vs. NCBI nr
Match: gi|659130998|ref|XP_008465464.1| (PREDICTED: DNA ligase 1-like [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 9.4e-06
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1 

Query: 2   AQGVKVLVGGKLETKMKDREELHSKVDDVALSVEKSKEKGKEKTFKEFCDEVTK 56
           AQG+K L   K E K++++EEL +KVD VALSVEK KE   EKTF+E C+E  K
Sbjct: 51  AQGIKALEEEKKEIKLREKEELLNKVDKVALSVEKRKE---EKTFEEHCEEFKK 101

The following BLAST results are available for this feature:
BLAST of MELO3C004673 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNF9_CUCSA2.3e-0655.56Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145900 PE=4 SV=1[more]
BLAST of MELO3C004673 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206372|gb|KGN61491.1|3.2e-0655.56hypothetical protein Csa_2G145900 [Cucumis sativus][more]
gi|659130998|ref|XP_008465464.1|9.4e-0657.41PREDICTED: DNA ligase 1-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004673T1MELO3C004673T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004673Wild cucumber (PI 183967)cpimeB011
MELO3C004673Cucumber (Chinese Long) v2cumeB015
MELO3C004673Cucurbita pepo (Zucchini)cpemeB028
MELO3C004673Cucumber (Gy14) v2cgybmeB010
MELO3C004673Cucumber (Chinese Long) v3cucmeB010
MELO3C004673Watermelon (97103) v2mewmbB143
MELO3C004673Wax gourdmewgoB174
MELO3C004673Cucumber (Gy14) v1cgymeB529