MELO3C004672.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C004672.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr12 : 12712501 .. 12712776 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGACTTATTTTACAAAGGTTACATCAACATAAAAGAGCATTACACTGCAATCAAGGGAAAGAGGGTAGACTTTGGTCTTGATGCCATCAACGAGTTATATAGGTTGGACAATAATGAAATTGGTCATGTAGTATTCAAGAACCGTAAAGATCGCGATCTACAAGAGGCCTTGGAAAAAGTCACCTGGCCATGGACAAAGTGGGACAGAACACCAACCGGGAAGTACCAACTCTTCCCGCACAATTTCACCACAAAGCAAGTGTGTGGTTGA

mRNA sequence

ATGGTGGACTTATTTTACAAAGGTTACATCAACATAAAAGAGCATTACACTGCAATCAAGGGAAAGAGGGTAGACTTTGGTCTTGATGCCATCAACGAGTTATATAGGTTGGACAATAATGAAATTGGTCATGTAGTATTCAAGAACCGTAAAGATCGCGATCTACAAGAGGCCTTGGAAAAAGTCACCTGGCCATGGACAAAGTGGGACAGAACACCAACCGGGAAGTACCAACTCTTCCCGCACAATTTCACCACAAAGCAAGTGTGTGGTTGA

Coding sequence (CDS)

ATGGTGGACTTATTTTACAAAGGTTACATCAACATAAAAGAGCATTACACTGCAATCAAGGGAAAGAGGGTAGACTTTGGTCTTGATGCCATCAACGAGTTATATAGGTTGGACAATAATGAAATTGGTCATGTAGTATTCAAGAACCGTAAAGATCGCGATCTACAAGAGGCCTTGGAAAAAGTCACCTGGCCATGGACAAAGTGGGACAGAACACCAACCGGGAAGTACCAACTCTTCCCGCACAATTTCACCACAAAGCAAGTGTGTGGTTGA

Protein sequence

MVDLFYKGYINIKEHYTAIKGKRVDFGLDAINELYRLDNNEIGHVVFKNRKDRDLQEALEKVTWPWTKWDRTPTGKYQLFPHNFTTKQVCG
Homology
[Close]
BLAST of MELO3C004672.2 vs. NCBI nr
Match: KGN44535.1 (hypothetical protein Csa_7G327740 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 8.0e-19
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1   MVDLFYKGYINIKEHYTAIKGKRVDFGLDAINELYRLDNNEIGHVVFKNRKDRDLQEALE 60
           +V+LFYK +I+ +E+YT +K + V FGLD IN  Y LD NE+G V+FKN   +D+ + L+
Sbjct: 98  VVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLK 157

Query: 61  KVTWPWTKWDRTPTGKYQLFPHNFTT 87
            +TW  T+WD  PT KYQLF HN  T
Sbjct: 158 TITWLKTEWDNKPTEKYQLFSHNLNT 183

[Close]
BLAST of MELO3C004672.2 vs. NCBI nr
Match: KGN54872.1 (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 2.9e-08
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 40 NEIGHVVFKNRKDRDLQEALEKVTWPWTKWDRTPTGKYQLFPHNFTTKQV 90
          NEIGH + KN + +DL+ AL+KV WP T  D TPTGKYQL PHN  T+ +
Sbjct: 3  NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAI 52

[Close]
BLAST of MELO3C004672.2 vs. TrEMBL
Match: tr|A0A0A0K4F2|A0A0A0K4F2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-19
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1   MVDLFYKGYINIKEHYTAIKGKRVDFGLDAINELYRLDNNEIGHVVFKNRKDRDLQEALE 60
           +V+LFYK +I+ +E+YT +K + V FGLD IN  Y LD NE+G V+FKN   +D+ + L+
Sbjct: 98  VVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTPKDMDDGLK 157

Query: 61  KVTWPWTKWDRTPTGKYQLFPHNFTT 87
            +TW  T+WD  PT KYQLF HN  T
Sbjct: 158 TITWLKTEWDNKPTEKYQLFSHNLNT 183

[Close]
BLAST of MELO3C004672.2 vs. TrEMBL
Match: tr|A0A0A0L2P0|A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 0 

Query: 40 NEIGHVVFKNRKDRDLQEALEKVTWPWTKWDRTPTGKYQLFPHNFTTKQV 90
          NEIGH + KN + +DL+ AL+KV WP T  D TPTGKYQL PHN  T+ +
Sbjct: 3  NEIGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNTEAI 52

The following BLAST results are available for this feature:
BLAST of MELO3C004672.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44535.18.0e-1951.16hypothetical protein Csa_7G327740 [Cucumis sativus][more]
KGN54872.12.9e-0858.00hypothetical protein Csa_4G569710 [Cucumis sativus][more]
BLAST of MELO3C004672.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C004672.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C004672.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4F2|A0A0A0K4F2_CUCSA5.3e-1951.16Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1[more]
tr|A0A0A0L2P0|A0A0A0L2P0_CUCSA1.9e-0858.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004672.2.1MELO3C004672.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004672.2Cucumber (Gy14) v2cgybmedB009
MELO3C004672.2Cucumber (Gy14) v1cgymedB528
MELO3C004672.2Cucurbita maxima (Rimu)cmamedB221
MELO3C004672.2Cucurbita maxima (Rimu)cmamedB425
MELO3C004672.2Cucurbita moschata (Rifu)cmomedB209
MELO3C004672.2Cucurbita moschata (Rifu)cmomedB400
MELO3C004672.2Cucurbita pepo (Zucchini)cpemedB006
MELO3C004672.2Cucurbita pepo (Zucchini)cpemedB033
MELO3C004672.2Wild cucumber (PI 183967)cpimedB011
MELO3C004672.2Cucumber (Chinese Long) v2cumedB010
MELO3C004672.2Melon (DHL92) v3.6.1medmedB071
MELO3C004672.2Bottle gourd (USVL1VR-Ls)lsimedB192
MELO3C004672.2Watermelon (Charleston Gray)medwcgB133
MELO3C004672.2Watermelon (97103) v1medwmB167
MELO3C004672.2Silver-seed gourdcarmedB0000
MELO3C004672.2Silver-seed gourdcarmedB0967
MELO3C004672.2Cucumber (Chinese Long) v3cucmedB009
MELO3C004672.2Watermelon (97103) v2medwmbB132
MELO3C004672.2Wax gourdmedwgoB176