MELO3C004561 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004561
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCTP synthase
Locationchr5 : 27577303 .. 27577852 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCATGAGCTCATTTTTCTTTTTCCACATTACAGATTACTGTAGCGAAAGCCAGAGTTCTCTCATTCACTCATGCCGCAAACCAGAAAGCTCGAAGTACATAGACCATGAAATATCAGTTACCAAACCTGCATCTAGCCCGAAAACTCCGATTTCGATCAATTCGCCGCCTTCCAGTCACAAGAATGAGCTCAACCGTCTGAATGCGAATGGTAACCAACATTCTGTATCAACTTTGCAATCATAAACATACATTCATCAGTTTCATTTCATCTAACCAAAAAATTCTTGAAGATTAATCGGTTTTTTAACTTACGTCAAACATAGGGAGTTCGAGAATATGGGTTTCGCCGGAGGATTCGCCGGCGAATGCCTGTGACGGCGTGGAATTTTTGAGAAATTACAGAAAAATCAATGAAGCAACAAACGGAATTTTTGGTGTAAGCTGCCGGTGGCCGGTTCGAGAATCGATGAAAGAAGCAGAGGAAGTTGTGGAAGATCTGGAGGAGAGAATATTAGTTGGATTGATTCATGAGGTTTTTGCATGA

mRNA sequence

ATGCTCATGAGCTCATTTTTCTTTTTCCACATTACAGATTACTGTAGCGAAAGCCAGAGTTCTCTCATTCACTCATGCCGCAAACCAGAAAGCTCGAAGTACATAGACCATGAAATATCAGTTACCAAACCTGCATCTAGCCCGAAAACTCCGATTTCGATCAATTCGCCGCCTTCCAGTCACAAGAATGAGCTCAACCGTCTGAATGCGAATGGGAGTTCGAGAATATGGGTTTCGCCGGAGGATTCGCCGGCGAATGCCTGTGACGGCGTGGAATTTTTGAGAAATTACAGAAAAATCAATGAAGCAACAAACGGAATTTTTGGTGTAAGCTGCCGGTGGCCGGTTCGAGAATCGATGAAAGAAGCAGAGGAAGTTGTGGAAGATCTGGAGGAGAGAATATTAGTTGGATTGATTCATGAGGTTTTTGCATGA

Coding sequence (CDS)

ATGCTCATGAGCTCATTTTTCTTTTTCCACATTACAGATTACTGTAGCGAAAGCCAGAGTTCTCTCATTCACTCATGCCGCAAACCAGAAAGCTCGAAGTACATAGACCATGAAATATCAGTTACCAAACCTGCATCTAGCCCGAAAACTCCGATTTCGATCAATTCGCCGCCTTCCAGTCACAAGAATGAGCTCAACCGTCTGAATGCGAATGGGAGTTCGAGAATATGGGTTTCGCCGGAGGATTCGCCGGCGAATGCCTGTGACGGCGTGGAATTTTTGAGAAATTACAGAAAAATCAATGAAGCAACAAACGGAATTTTTGGTGTAAGCTGCCGGTGGCCGGTTCGAGAATCGATGAAAGAAGCAGAGGAAGTTGTGGAAGATCTGGAGGAGAGAATATTAGTTGGATTGATTCATGAGGTTTTTGCATGA

Protein sequence

MLMSSFFFFHITDYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRLNANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVEDLEERILVGLIHEVFA*
Homology
[Close]
BLAST of MELO3C004561 vs. TrEMBL
Match: A0A0A0LFV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004140 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.8e-63
Identity = 119/136 (87.50%), Postives = 126/136 (92.65%), Query Frame = 1 

Query: 9   FHITDYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRL 68
           +   D+CSESQSSLIHSCRKPESSKYIDHEISVTKP S+P+TPISINSPP SH NELN L
Sbjct: 587 YQTCDHCSESQSSLIHSCRKPESSKYIDHEISVTKPVSTPRTPISINSPPDSHTNELNHL 646

Query: 69  NANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVE 128
           NANGSSR+WVSPE+ PANACDGVE LRNYRKINEATNGIFG+SCRWPVRESMKE EEVVE
Sbjct: 647 NANGSSRLWVSPEELPANACDGVESLRNYRKINEATNGIFGLSCRWPVRESMKEVEEVVE 706

Query: 129 DLEERILVGLIHEVFA 145
           DLEERILVGLIHEVFA
Sbjct: 707 DLEERILVGLIHEVFA 722

[Close]
BLAST of MELO3C004561 vs. NCBI nr
Match: gi|659071153|ref|XP_008458399.1| (PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 6.3e-70
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 1 

Query: 9   FHITDYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRL 68
           +   DYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRL
Sbjct: 585 YQTCDYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRL 644

Query: 69  NANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVE 128
           NANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVE
Sbjct: 645 NANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVE 704

Query: 129 DLEERILVGLIHEVFA 145
           DLEERILVGLIHEVFA
Sbjct: 705 DLEERILVGLIHEVFA 720

[Close]
BLAST of MELO3C004561 vs. NCBI nr
Match: gi|778665914|ref|XP_011648656.1| (PREDICTED: uncharacterized protein LOC105434538 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 119/136 (87.50%), Postives = 126/136 (92.65%), Query Frame = 1 

Query: 9   FHITDYCSESQSSLIHSCRKPESSKYIDHEISVTKPASSPKTPISINSPPSSHKNELNRL 68
           +   D+CSESQSSLIHSCRKPESSKYIDHEISVTKP S+P+TPISINSPP SH NELN L
Sbjct: 587 YQTCDHCSESQSSLIHSCRKPESSKYIDHEISVTKPVSTPRTPISINSPPDSHTNELNHL 646

Query: 69  NANGSSRIWVSPEDSPANACDGVEFLRNYRKINEATNGIFGVSCRWPVRESMKEAEEVVE 128
           NANGSSR+WVSPE+ PANACDGVE LRNYRKINEATNGIFG+SCRWPVRESMKE EEVVE
Sbjct: 647 NANGSSRLWVSPEELPANACDGVESLRNYRKINEATNGIFGLSCRWPVRESMKEVEEVVE 706

Query: 129 DLEERILVGLIHEVFA 145
           DLEERILVGLIHEVFA
Sbjct: 707 DLEERILVGLIHEVFA 722

The following BLAST results are available for this feature:
BLAST of MELO3C004561 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFV4_CUCSA1.8e-6387.50Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004140 PE=4 SV=1[more]
BLAST of MELO3C004561 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071153|ref|XP_008458399.1|6.3e-7097.06PREDICTED: uncharacterized protein LOC103497820 [Cucumis melo][more]
gi|778665914|ref|XP_011648656.1|2.6e-6387.50PREDICTED: uncharacterized protein LOC105434538 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004561T1MELO3C004561T1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004561Csa2G004140Cucumber (Chinese Long) v2cumeB140
MELO3C004561Cla016770Watermelon (97103) v1mewmB421
MELO3C004561ClCG11G002410Watermelon (Charleston Gray)mewcgB372
MELO3C004561Cla97C11G208830Watermelon (97103) v2mewmbB373
MELO3C004561Bhi06G001719Wax gourdmewgoB462
MELO3C004561CSPI02G01120Wild cucumber (PI 183967)cpimeB140
MELO3C004561Cucsa.116390Cucumber (Gy14) v1cgymeB172
MELO3C004561CmaCh12G012540Cucurbita maxima (Rimu)cmameB172
MELO3C004561CmaCh05G013410Cucurbita maxima (Rimu)cmameB735
MELO3C004561CmoCh12G012830Cucurbita moschata (Rifu)cmomeB161
MELO3C004561CmoCh05G013490Cucurbita moschata (Rifu)cmomeB724
MELO3C004561Cp4.1LG07g10160Cucurbita pepo (Zucchini)cpemeB772
MELO3C004561Cp4.1LG11g11110Cucurbita pepo (Zucchini)cpemeB099
MELO3C004561CsGy2G001120Cucumber (Gy14) v2cgybmeB121
MELO3C004561Carg10862Silver-seed gourdcarmeB0577
MELO3C004561Carg18578Silver-seed gourdcarmeB0883
MELO3C004561CsaV3_2G002210Cucumber (Chinese Long) v3cucmeB142
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004561Silver-seed gourdcarmeB0039
MELO3C004561Silver-seed gourdcarmeB0133
MELO3C004561Silver-seed gourdcarmeB0209
MELO3C004561Cucumber (Chinese Long) v3cucmeB082
MELO3C004561Watermelon (97103) v2mewmbB391
MELO3C004561Watermelon (97103) v2mewmbB404
MELO3C004561Wax gourdmewgoB471
MELO3C004561Wax gourdmewgoB491
MELO3C004561Melon (DHL92) v3.5.1memeB104
MELO3C004561Melon (DHL92) v3.5.1memeB136
MELO3C004561Cucurbita maxima (Rimu)cmameB074
MELO3C004561Cucurbita maxima (Rimu)cmameB129
MELO3C004561Cucurbita moschata (Rifu)cmomeB067
MELO3C004561Cucurbita moschata (Rifu)cmomeB121
MELO3C004561Wild cucumber (PI 183967)cpimeB077
MELO3C004561Watermelon (Charleston Gray)mewcgB392
MELO3C004561Watermelon (Charleston Gray)mewcgB401
MELO3C004561Watermelon (97103) v1mewmB409
MELO3C004561Watermelon (97103) v1mewmB433
MELO3C004561Cucurbita pepo (Zucchini)cpemeB343
MELO3C004561Cucurbita pepo (Zucchini)cpemeB633
MELO3C004561Bottle gourd (USVL1VR-Ls)lsimeB116
MELO3C004561Bottle gourd (USVL1VR-Ls)lsimeB418
MELO3C004561Bottle gourd (USVL1VR-Ls)lsimeB442