MELO3C004491 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004491
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionThylakoid lumenal 16.5 kDa protein
Locationchr5 : 26997518 .. 27000586 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCAAAGGAAAAAGAAAATAAAAAAAAAAAACCCAAGAAAATTAGGCAAAAGAGAAGAAAAAGGGTTAAGAAAAAAAAAAAAATAAAAAAGTACAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCATCTTCTTCCTATTCTTCACCTCCATTGTTGAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACACTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAGGAGCTGCTGGAGAAGGTGAAGAAGGATAGAAAGAAAAGGCTCGAGAAGCAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGTTTTGTATGCATTCTACCTGTTTGTGTTTTGTTTTCTGGGAAACTTCCAACTTGGAAATTTGATCATAGCTATGAATATGTTTAGATTGTCCAATTGGATTCTTTGTTTCGATTCACAAATGCGCTCATATTTGTTCCTTATAATAGTTGCAAATTTTTTTTAATAACTTTTCTTGCAACTACTATAAGAATGAAAATGTGAGAGCACATAACACCAATCTTTCTCTCTGCCGGTGATTATTAGGTTGTTATATGGTGGAGGATAATTTTAAGATGAAGTTGTTAGAAGAACTTGATAGAAAACAAGAAAATAAATTAGTGCGAAGCCAATTACTTAGGTTCTGTCTCTAACCATTTGGATTTTTAAAATCAAGCTTATAAACACTACTTCCATGTGTTCTTAAGAAATCACGAATGACTTACCTAAAAATTACGAGCAATGTTCAAAAACTTAAAACAAAAAATAAGATATTGTCAAATTTACAACACTTGCATGAAAAAGCTAATTCAGCAATACATAAATGGACATGGAAAAGTAGAGAGGCGTGGATATAAGAAATGTAGAGAAAAACAAGAAGAATAACTAGTTCTTTCCAATGAGCAAAATCAACAGAGACACATACAAATATATTGATGGGGGCCATCCTTGGGGATGGTAGATCTTTTCCTTGTTGATAAATGGAAAGATACATCAAATTATAAGGAGAACTGAAAGTAATTTATTCATGCCCATGAACTGACTCATGGGTTGTGTTTGTATAGCCTAGGGTTCTAAAGCCAAGCATACGTATGTAATGTGGGCTTTCTTCTCTCCTGGCTATAGGTTTAGTATCCTATGGACTACTTGAATCTAAGTTTTTCAAACTCATTCTTCAAGCCACGTATTTACTTCTGCAAACCACAAACCTACAAATCAAATACACCCATATAGACTCAGCTTTCCACCATTCAAATCCTTCTTACATTCTATACAAGATCATCCTTTTCAACCTCATTTGAACAAACCTACACGTGTTAAAACAGTTAGTCAAACAATCCTTTATGAAGTAGTCTTGGCTTCTGAAATCATGCGACTTAATTCTTCATGTCGGTGGATCACAAGTTCTGTGTTGTTGCAGTCAATCATAAAGTTAAGCTATCAAAGCTAAGCTATGAGCGAAGGCATCTGAAACAAGCTAAAACCTTACCATAATCATTTGGTCTTTTTGCAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATGATAATGACTTCACAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTCCAGAATGCCAATTTAGCCTTCAACAAGGTTAGCAAAATATCTACAACAAAATCAAGTCTGTTTATATTACTTTCTGGAAGTTTTGATCTTTGGTTAGAATGCACATTGGTTCACAAAGTACTAATGAGTTTGAGTCAAACTTAACAACAAAAAGATAAAATAAAATTAAATAAAAAGATCACTTAGAACATGACAGGATGTGTTTTATCTGGTATAAAAATTAAAGCATGTTTACCGTGGATATACGACGGCATGGCTTCTATATCACCATATCCAAAAAGCATGATTTTGTATGAACTTTTACTTAGACAAATTTACTGAATATGATGTAAACGATTAAAATTTTATTGTAACAAATTTCGCTTCTTTTTTCTTTAAGGCACATCAATCAAGCTTGATGCCATCATATATTATTTCATTTTTTCAAATGAAGTAGAAACTAGACCATCTAAAAAACAATTTATTAGACCAAGATGTTCAAATTTTCAAATTTGGAAGATCAAAATGGAAACAAGCATTTAATTCAGGGACATATATTTTAGCCTTGAACCTCCTCATCTTTCTTGCTAGCAGCCCATTTGATGTAATATTCTATGATGAATGGTAAACAGGTGAACTCAAGATATTTGTCAGGTTGGTTAGAAGTTAACTGATTCTTTGAGAAATTTCTGACTTTTGTGTTAAACTTCTTGACCAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACGCATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGGTGGGTTATCTTTTAATAAATTATGCAGTAGTCAAGATAAAACAGAATGTAACATTTTGCAGAGGATAAAACTACTAAGAATTGAAAGATTTAACCCCCCGGAGTTCTAAACAATGGAACATTTTTGCATTGCAGTTACTAAGAGTGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACGATCTGCATCGATCTCATTTATTCTAAGAATGACCCACTGTATTTTTATAGTCTCCACCTAATTTTTTTTTTCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGATAGATTCCGTTGGTTAATTTGAATGTTATTAGTGATTATCCACGAAAACCTACACTTCTGTTTA

mRNA sequence

CACCAAAGGAAAAAGAAAATAAAAAAAAAAAACCCAAGAAAATTAGGCAAAAGAGAAGAAAAAGGGTTAAGAAAAAAAAAAAAATAAAAAAGTACAGAGATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCATCTTCTTCCTATTCTTCACCTCCATTGTTGAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACACTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAGGAGCTGCTGGAGAAGGTGAAGAAGGATAGAAAGAAAAGGCTCGAGAAGCAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATGATAATGACTTCACAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTCCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACGCATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAGTGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGCCTTTGAGTTGAAAAAACAACGATCTGCATCGATCTCATTTATTCTAAGAATGACCCACTGTATTTTTATAGTCTCCACCTAATTTTTTTTTTCCCTCCCAAATCTTTGCAATTAAAAGTCAAAGAAGCTGATTTTTCTTGTCATCTTCTCACTGAGTTTCTGGTGTCAATGTTACTGAACTTTGAATGGATAGATTCCGTTGGTTAATTTGAATGTTATTAGTGATTATCCACGAAAACCTACACTTCTGTTTA

Coding sequence (CDS)

ATGGCAACATCCTTCCTATCAACAGCAAACACATTCCATTCTTCCACACCTTCATCTTCATCTTCATCTTCTTCCTATTCTTCACCTCCATTGTTGAGATCAAGATTTGGTTGCCTTTATTGCCATAATAACACTAAACGACTGGTTATCTGCAAGAGTAGTAGTGACCCACCTTCCAAAATTCCAGCTTTAACCAAGAGAACCCTCTCAATCTGCTTCATTTCCAGTTTCATTTTCCCTCTTGTGGGTCAGGGATTTTCCGATGCAAATGCTGCGATTCTTGAAGCTGATGATGATGAGGAGCTGCTGGAGAAGGTGAAGAAGGATAGAAAGAAAAGGCTCGAGAAGCAAGGGGTTATCAGTTCTGCCAATAAAGAAAAAGGATACCTCCAGGAACTTGTGTACAAGCTGAGCAAAGTAGGCCAAGCCATTGATGATAATGACTTCACAACAGCAAGTTCAGTTCTTGGGGGTAGTAGTGATGCAGATTGGGTCCAGAATGCCAATTTAGCCTTCAACAAGCTGAGTTCAAGTCCCGAAGAGAAATCTGAGGTGGACGCATTCAACTCCTCTTTAGCTTCATTAATCTCATCAGTTACTAAGAGTGATGTTGAATCCTCCAAAACTGCCTTTGTAGCATCTGCTAGTGCATTTGAGAAATGGACAGCCTTGGCAGGGCTTGTTGGACAGCTGAAGGGCCTTTGA

Protein sequence

MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL*
Homology
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BLAST of MELO3C004491 vs. Swiss-Prot
Match: TL16_ARATH (Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1 SV=3)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-55
Identity = 134/240 (55.83%), Postives = 159/240 (66.25%), Query Frame = 1 

Query: 1   MATSFL--STANTFHSSTPSSSSSSS-SYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDP 60
           MA S L  ST N F S+T SSS  +  +YS               N T   ++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNS-----------KNQTSSSLLWK----- 60

Query: 61  PSKIPALTKRTLSICFISSFI-FPLVGQGFS--DANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV       DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 EKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNK 180
           E+Q V++SA KEKGYLQ+LVYKLSKVGQAI++ND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           LS+SPEE +EV+AFNSSLASLI+SV K+D+ESSK AFV+SA AFEKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

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BLAST of MELO3C004491 vs. TrEMBL
Match: A0A0A0LI29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006840 PE=4 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 1.2e-117
Identity = 224/238 (94.12%), Postives = 231/238 (97.06%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSS----SSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSD 60
           MAT+FLSTANTFHSSTPSS    SSSSSSY +PPL+RSRFGCLYCHNNTKRLVICKSSSD
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120
           PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLS 180
           QGVISSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           SSPEEKSEVDAFNSSLASLISSVTK+DVESSKTAFVASASAFEKWTALAGLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

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BLAST of MELO3C004491 vs. TrEMBL
Match: D7TC38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05570 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 3.4e-80
Identity = 165/235 (70.21%), Postives = 194/235 (82.55%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
           MAT+FLSTANTF  S+ SSSSSSSS SS  L  +     + HN  ++L + K+ S+P   
Sbjct: 1   MATTFLSTANTFLPSSSSSSSSSSSSSSSSLAATHI-YPHRHNVKRQLTLSKAVSEPRPS 60

Query: 61  IPALTKRTLSICFISSFIFPLVGQGF-SDANAAILEADDDEELLEKVKKDRKKRLEKQGV 120
            P +TKR+LSI  ++S +F L G+G+ SDANAAILEADDDEELLEKVKKDRKKR+EKQGV
Sbjct: 61  SPIITKRSLSITLLTSLVFSLAGKGYYSDANAAILEADDDEELLEKVKKDRKKRIEKQGV 120

Query: 121 ISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSP 180
           ISS+NKE GYLQELVYKLSKVGQAID+ND + ASS LG ++DADWVQ AN+AF KLSSSP
Sbjct: 121 ISSSNKETGYLQELVYKLSKVGQAIDNNDLSAASSFLGSNTDADWVQKANIAFTKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           EEKSEVDAFNSSLASLISSV ++D+ESSK AFV+SA+AFEKWT L GLVG+LKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVVRNDMESSKIAFVSSATAFEKWTTLTGLVGRLKGL 234

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BLAST of MELO3C004491 vs. TrEMBL
Match: B9SMH8_RICCO (Thylakoid lumenal 16.5 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1075480 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 5.8e-80
Identity = 164/239 (68.62%), Postives = 197/239 (82.43%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYC--HNNTKR-LVICK--SSS 60
           MAT+FLSTA +F SS   SSSSSSS +S  L       L+C   NN KR +++CK  S S
Sbjct: 1   MATTFLSTAKSFLSSNLPSSSSSSSLTSSSLSSLTAPLLFCPQKNNAKRPIILCKALSES 60

Query: 61  DPPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE 120
            PP+  P ++KR+LS+CFI+SF+F L  +G S ANAAILEADDDEELLEKVKKDRKKR+E
Sbjct: 61  APPTS-PIISKRSLSVCFITSFVFSLTSRGNSSANAAILEADDDEELLEKVKKDRKKRIE 120

Query: 121 KQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKL 180
           +QGVISS+NKEKGYLQ++VYKLSKVGQAI++ND TTA+SVLGG++D DWVQ ANLAF+KL
Sbjct: 121 RQGVISSSNKEKGYLQDVVYKLSKVGQAIENNDLTTANSVLGGTTDTDWVQKANLAFDKL 180

Query: 181 SSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           SSSP EK++VD FNSSLASLISSV ++D+ESSKTAFV+SA+AFE WT L GLV QLKGL
Sbjct: 181 SSSPAEKNQVDTFNSSLASLISSVVRNDIESSKTAFVSSATAFETWTTLTGLVAQLKGL 238

[Close]
BLAST of MELO3C004491 vs. TrEMBL
Match: B9IMX7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12970g PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-78
Identity = 166/240 (69.17%), Postives = 193/240 (80.42%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKR-LVICKSSSDPPS 60
           MAT+FLSTA  F SS  S+ SS SS ++ PLL   F C     N +R L  CK+ SD   
Sbjct: 1   MATTFLSTAKPFLSS--STPSSLSSLTNRPLL---FSCPQQKCNPRRPLPSCKALSDESL 60

Query: 61  KIPA-----LTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRL 120
            +PA     +TKR+LSICF++SF+F L  +G S +NAAILEADDDEELLEKVK+DRKKRL
Sbjct: 61  PVPAASPIIITKRSLSICFLTSFVFSLASRGSSSSNAAILEADDDEELLEKVKRDRKKRL 120

Query: 121 EKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNK 180
           E+QGVISSANKEKGYLQ+LVYKLSKVGQAID+ND +TASSVLGGS+D DWV+ AN+AF K
Sbjct: 121 ERQGVISSANKEKGYLQDLVYKLSKVGQAIDNNDLSTASSVLGGSTDTDWVKKANIAFTK 180

Query: 181 LSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           LSSSPEEK EVD FNSSL+SLISSVT +D+ESSKTAFV+SA+AFEKWT L GL GQLKGL
Sbjct: 181 LSSSPEEKIEVDTFNSSLSSLISSVTSNDIESSKTAFVSSATAFEKWTTLTGLFGQLKGL 235

[Close]
BLAST of MELO3C004491 vs. TrEMBL
Match: B9HAA4_POPTR (Chloroplast thylakoid lumen family protein OS=Populus trichocarpa GN=POPTR_0006s06680g PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.9e-78
Identity = 165/238 (69.33%), Postives = 197/238 (82.77%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSD---P 60
           MAT+FL TA  F SS+ S+ SS SS ++ P+L S      C N T+ L +CK+ SD   P
Sbjct: 1   MATAFLLTAKPFLSSS-STPSSLSSLTNTPVLLSCAQQKKC-NATRPLTLCKTLSDESPP 60

Query: 61  PSKIPA-LTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120
            +  P  +TKR+LSICF++SF+F L  +G S ANAAILEADDDEEL+EKVK+DRKKRLEK
Sbjct: 61  VTHSPVIITKRSLSICFLTSFVFSLASRGDSSANAAILEADDDEELMEKVKRDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLS 180
           QGVISSAN+EKGYLQ+LVYKLSKVGQAID ND +TASSVLGGS+D DWV+ AN+AF KLS
Sbjct: 121 QGVISSANQEKGYLQDLVYKLSKVGQAIDKNDLSTASSVLGGSTDTDWVRKANIAFTKLS 180

Query: 181 SSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           SSP+EK++VD+FNSSLASLISSVT +D+ESSKTAFV+SA+AFEKWTAL GLVGQLKGL
Sbjct: 181 SSPDEKTQVDSFNSSLASLISSVTGNDIESSKTAFVSSATAFEKWTALTGLVGQLKGL 236

[Close]
BLAST of MELO3C004491 vs. TAIR10
Match: AT4G02530.1 (AT4G02530.1 chloroplast thylakoid lumen protein)

HSP 1 Score: 218.0 bits (554), Expect = 6.2e-57
Identity = 134/240 (55.83%), Postives = 159/240 (66.25%), Query Frame = 1 

Query: 1   MATSFL--STANTFHSSTPSSSSSSS-SYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDP 60
           MA S L  ST N F S+T SSS  +  +YS               N T   ++ K     
Sbjct: 1   MAKSLLCSSTLNPFFSTTLSSSKKNQIAYSGNS-----------KNQTSSSLLWK----- 60

Query: 61  PSKIPALTKRTLSICFISSFI-FPLVGQGFS--DANAAILEADDDEELLEKVKKDRKKRL 120
                   +R LS+ F+SS +   LV       DANAAILEADDDEELLEKVK+DRKKR+
Sbjct: 61  --------RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRI 120

Query: 121 EKQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNK 180
           E+Q V++SA KEKGYLQ+LVYKLSKVGQAI++ND   A  VLG   D +WV+  NLAF K
Sbjct: 121 ERQAVLNSAVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTK 180

Query: 181 LSSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           LS+SPEE +EV+AFNSSLASLI+SV K+D+ESSK AFV+SA AFEKWT L GL+ QLKGL
Sbjct: 181 LSTSPEENTEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQLKGL 216

[Close]
BLAST of MELO3C004491 vs. NCBI nr
Match: gi|659070955|ref|XP_008457444.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 4.2e-124
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
           MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK
Sbjct: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60

Query: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120
           IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI
Sbjct: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
           SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE
Sbjct: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180

Query: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL
Sbjct: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 234

[Close]
BLAST of MELO3C004491 vs. NCBI nr
Match: gi|449443065|ref|XP_004139301.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 430.6 bits (1106), Expect = 1.7e-117
Identity = 224/238 (94.12%), Postives = 231/238 (97.06%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSS----SSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSD 60
           MAT+FLSTANTFHSSTPSS    SSSSSSY +PPL+RSRFGCLYCHNNTKRLVICKSSSD
Sbjct: 1   MATAFLSTANTFHSSTPSSPSSSSSSSSSYFTPPLIRSRFGCLYCHNNTKRLVICKSSSD 60

Query: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120
           PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK
Sbjct: 61  PPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEK 120

Query: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLS 180
           QGVISSANKEKGYLQELVYKLSKVGQAID+NDF+TASSVLGGSSDADWV+ AN AFNKLS
Sbjct: 121 QGVISSANKEKGYLQELVYKLSKVGQAIDNNDFSTASSVLGGSSDADWVKKANSAFNKLS 180

Query: 181 SSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           SSPEEKSEVDAFNSSLASLISSVTK+DVESSKTAFVASASAFEKWTALAGLVGQLKGL
Sbjct: 181 SSPEEKSEVDAFNSSLASLISSVTKNDVESSKTAFVASASAFEKWTALAGLVGQLKGL 238

[Close]
BLAST of MELO3C004491 vs. NCBI nr
Match: gi|225445561|ref|XP_002285317.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Vitis vinifera])

HSP 1 Score: 306.2 bits (783), Expect = 4.9e-80
Identity = 165/235 (70.21%), Postives = 194/235 (82.55%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
           MAT+FLSTANTF  S+ SSSSSSSS SS  L  +     + HN  ++L + K+ S+P   
Sbjct: 1   MATTFLSTANTFLPSSSSSSSSSSSSSSSSLAATHI-YPHRHNVKRQLTLSKAVSEPRPS 60

Query: 61  IPALTKRTLSICFISSFIFPLVGQGF-SDANAAILEADDDEELLEKVKKDRKKRLEKQGV 120
            P +TKR+LSI  ++S +F L G+G+ SDANAAILEADDDEELLEKVKKDRKKR+EKQGV
Sbjct: 61  SPIITKRSLSITLLTSLVFSLAGKGYYSDANAAILEADDDEELLEKVKKDRKKRIEKQGV 120

Query: 121 ISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSP 180
           ISS+NKE GYLQELVYKLSKVGQAID+ND + ASS LG ++DADWVQ AN+AF KLSSSP
Sbjct: 121 ISSSNKETGYLQELVYKLSKVGQAIDNNDLSAASSFLGSNTDADWVQKANIAFTKLSSSP 180

Query: 181 EEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           EEKSEVDAFNSSLASLISSV ++D+ESSK AFV+SA+AFEKWT L GLVG+LKGL
Sbjct: 181 EEKSEVDAFNSSLASLISSVVRNDMESSKIAFVSSATAFEKWTTLTGLVGRLKGL 234

[Close]
BLAST of MELO3C004491 vs. NCBI nr
Match: gi|255572525|ref|XP_002527197.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Ricinus communis])

HSP 1 Score: 305.4 bits (781), Expect = 8.3e-80
Identity = 164/239 (68.62%), Postives = 197/239 (82.43%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYC--HNNTKR-LVICK--SSS 60
           MAT+FLSTA +F SS   SSSSSSS +S  L       L+C   NN KR +++CK  S S
Sbjct: 1   MATTFLSTAKSFLSSNLPSSSSSSSLTSSSLSSLTAPLLFCPQKNNAKRPIILCKALSES 60

Query: 61  DPPSKIPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLE 120
            PP+  P ++KR+LS+CFI+SF+F L  +G S ANAAILEADDDEELLEKVKKDRKKR+E
Sbjct: 61  APPTS-PIISKRSLSVCFITSFVFSLTSRGNSSANAAILEADDDEELLEKVKKDRKKRIE 120

Query: 121 KQGVISSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKL 180
           +QGVISS+NKEKGYLQ++VYKLSKVGQAI++ND TTA+SVLGG++D DWVQ ANLAF+KL
Sbjct: 121 RQGVISSSNKEKGYLQDVVYKLSKVGQAIENNDLTTANSVLGGTTDTDWVQKANLAFDKL 180

Query: 181 SSSPEEKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           SSSP EK++VD FNSSLASLISSV ++D+ESSKTAFV+SA+AFE WT L GLV QLKGL
Sbjct: 181 SSSPAEKNQVDTFNSSLASLISSVVRNDIESSKTAFVSSATAFETWTTLTGLVAQLKGL 238

[Close]
BLAST of MELO3C004491 vs. NCBI nr
Match: gi|1009167090|ref|XP_015901935.1| (PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 300.4 bits (768), Expect = 2.7e-78
Identity = 162/234 (69.23%), Postives = 189/234 (80.77%), Query Frame = 1 

Query: 1   MATSFLSTANTFHSSTPSSSSSSSSYSSPPLLRSRFGCLYCHNNTKRLVICKSSSDPPSK 60
           MAT+FLSTA TF  S  SS+S+SSS+   PL        +  N  K L ICK+ +DPP  
Sbjct: 1   MATAFLSTAITFLPSRLSSASASSSF---PLTTPSSVHTHRDNTRKLLTICKAVNDPPPP 60

Query: 61  IPALTKRTLSICFISSFIFPLVGQGFSDANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120
            P LTKR LS+C I++F F L GQG S+ANAAILEADDDEELLEKVKKDRKKRLEKQGVI
Sbjct: 61  SPILTKRALSLCSITTFFFSLAGQGGSNANAAILEADDDEELLEKVKKDRKKRLEKQGVI 120

Query: 121 SSANKEKGYLQELVYKLSKVGQAIDDNDFTTASSVLGGSSDADWVQNANLAFNKLSSSPE 180
           +S+N+EK YLQ++VYKLSKVGQAID+ND + ASSVLG S DADWV+ AN AF KLSSSPE
Sbjct: 121 NSSNEEKAYLQDVVYKLSKVGQAIDNNDLSAASSVLGSSIDADWVKKANKAFIKLSSSPE 180

Query: 181 EKSEVDAFNSSLASLISSVTKSDVESSKTAFVASASAFEKWTALAGLVGQLKGL 235
           EKS+VD FN+SLASLI+SVT++DVESSK AFV+SASAFE+WT L GL+GQLKGL
Sbjct: 181 EKSQVDTFNTSLASLIASVTRNDVESSKIAFVSSASAFEQWTTLTGLLGQLKGL 231

The following BLAST results are available for this feature:
BLAST of MELO3C004491 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TL16_ARATH1.1e-5555.83Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4... [more]
BLAST of MELO3C004491 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI29_CUCSA1.2e-11794.12Uncharacterized protein OS=Cucumis sativus GN=Csa_2G006840 PE=4 SV=1[more]
D7TC38_VITVI3.4e-8070.21Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05570 PE=4 SV=... [more]
B9SMH8_RICCO5.8e-8068.62Thylakoid lumenal 16.5 kDa protein, chloroplast, putative OS=Ricinus communis GN... [more]
B9IMX7_POPTR1.9e-7869.17Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12970g PE=4 SV=1[more]
B9HAA4_POPTR1.9e-7869.33Chloroplast thylakoid lumen family protein OS=Populus trichocarpa GN=POPTR_0006s... [more]
BLAST of MELO3C004491 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G02530.16.2e-5755.83 chloroplast thylakoid lumen protein[more]
BLAST of MELO3C004491 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659070955|ref|XP_008457444.1|4.2e-124100.00PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis melo][more]
gi|449443065|ref|XP_004139301.1|1.7e-11794.12PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Cucumis sativus][more]
gi|225445561|ref|XP_002285317.1|4.9e-8070.21PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Vitis vinifera][more]
gi|255572525|ref|XP_002527197.1|8.3e-8068.62PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Ricinus communis][more]
gi|1009167090|ref|XP_015901935.1|2.7e-7869.23PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0008150 biological_process
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0009735 response to cytokinin
biological_process GO:0009409 response to cold
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0046148 pigment biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:1901564 organonitrogen compound metabolic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0071840 cellular component organization or biogenesis
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:1901362 organic cyclic compound biosynthetic process
biological_process GO:0009814 defense response, incompatible interaction
biological_process GO:0051186 cofactor metabolic process
biological_process GO:0098542 defense response to other organism
biological_process GO:0019682 glyceraldehyde-3-phosphate metabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0008299 isoprenoid biosynthetic process
biological_process GO:0072330 monocarboxylic acid biosynthetic process
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0010206 photosystem II repair
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU49470melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004491T1MELO3C004491T1mRNA
MELO3C004491T2MELO3C004491T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU49470MU49470transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35742FAMILY NOT NAMEDcoord: 1..220
score: 2.8
NoneNo IPR availablePANTHERPTHR35742:SF1THYLAKOID LUMENAL 16.5 KDA PROTEIN, CHLOROPLASTICcoord: 1..220
score: 2.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C004491Csa2G006840Cucumber (Chinese Long) v2cumeB140
MELO3C004491ClCG11G003160Watermelon (Charleston Gray)mewcgB372
MELO3C004491Cla97C11G209610Watermelon (97103) v2mewmbB373
MELO3C004491Bhi06G001633Wax gourdmewgoB454
MELO3C004491CSPI02G01810Wild cucumber (PI 183967)cpimeB140
MELO3C004491Cucsa.132190Cucumber (Gy14) v1cgymeB216
MELO3C004491CmaCh05G012850Cucurbita maxima (Rimu)cmameB735
MELO3C004491CmoCh05G013060Cucurbita moschata (Rifu)cmomeB724
MELO3C004491Lsi11G003280Bottle gourd (USVL1VR-Ls)lsimeB116
MELO3C004491Cp4.1LG11g10420Cucurbita pepo (Zucchini)cpemeB099
MELO3C004491CsGy2G001840Cucumber (Gy14) v2cgybmeB121
MELO3C004491Carg10914Silver-seed gourdcarmeB0577
MELO3C004491CsaV3_2G002980Cucumber (Chinese Long) v3cucmeB142
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C004491Cucurbita pepo (Zucchini)cpemeB343
MELO3C004491Cucurbita pepo (Zucchini)cpemeB778
MELO3C004491Bottle gourd (USVL1VR-Ls)lsimeB219
MELO3C004491Bottle gourd (USVL1VR-Ls)lsimeB313
MELO3C004491Cucumber (Gy14) v2cgybmeB492
MELO3C004491Silver-seed gourdcarmeB0133
MELO3C004491Silver-seed gourdcarmeB0258
MELO3C004491Cucumber (Chinese Long) v3cucmeB575
MELO3C004491Watermelon (97103) v2mewmbB383
MELO3C004491Watermelon (97103) v2mewmbB415
MELO3C004491Wax gourdmewgoB488
MELO3C004491Wax gourdmewgoB489
MELO3C004491Melon (DHL92) v3.5.1memeB088
MELO3C004491Cucurbita maxima (Rimu)cmameB074
MELO3C004491Cucurbita maxima (Rimu)cmameB172
MELO3C004491Cucurbita moschata (Rifu)cmomeB067
MELO3C004491Cucurbita moschata (Rifu)cmomeB161
MELO3C004491Wild cucumber (PI 183967)cpimeB563
MELO3C004491Cucumber (Chinese Long) v2cumeB556
MELO3C004491Watermelon (Charleston Gray)mewcgB361
MELO3C004491Watermelon (Charleston Gray)mewcgB384
MELO3C004491Watermelon (Charleston Gray)mewcgB396
MELO3C004491Watermelon (97103) v1mewmB395
MELO3C004491Watermelon (97103) v1mewmB409
MELO3C004491Watermelon (97103) v1mewmB412
MELO3C004491Watermelon (97103) v1mewmB421
MELO3C004491Watermelon (97103) v1mewmB439