MELO3C004417 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004417
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Methyltransferase
Location	chr5 : 26337137 .. 26337896 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAGCCGCCGAATATTTCTCCAAAGACTTCCAATGGGACGATCTTCGAATTCGGGTCGAGAACGACCCGAATTTGCAATACCATTTGCTTCCATTTGAGCCCTCCAATTCCATTCCGTCAGTTTCTCCAGAAGCCGATTCAAACGCATGGAGTCGCTTTCACCTCCGTCATTCCTCCGGAAAATTCTTCAAGGTTTTGATTCCGTTTAGTATTTGAACGTTTTTGTATTCATAGCAACCTAACTTTTGCTGTTTCTCTTAGTTTGGTTGTGATTTGAGTATTTCATATTTGGGTTCAGGAAAGGCGGTATTTGTTGAAGGAATTTCCTGAACTAGTTTCTTGTAAGAAGTATTGTAAAGTTTTGGAGGTGGGTTGTGGTAATGGAAGCACCGTTATTCCAATCTTGCGGTAACCTCCAACGTATTCAACTTTTCCTCTGCTTTACTTCTTAGTCATGTTCATCAATTTTGTTTGTTTTGAATTTTTTTTTTTAAAGAAATTTAGTTGATAAATACTGTTTGTGTTTGCATTGTGCTTGCTTATATGAGATTTTATTCAAAAATCTTATCGTTGAAATTAATTCGGAAGTAGAGAAAAATCAGTGTCAGCTGGAGGAGACTTTTAGAACAGAAGAATAAAAAGACAAATGTTATTGAATGGGCTCTTAAAGCTTCCACATTTTCTATCTTGCTCTCTAAATTTCACCTATGTTTCTATGTTATTGTTGTTTAGGTTAGCTTTCATTCAGGGGTGA

mRNA sequence

ATGGGGGAAGCCGCCGAATATTTCTCCAAAGACTTCCAATGGGACGATCTTCGAATTCGGGTCGAGAACGACCCGAATTTGCAATACCATTTGCTTCCATTTGAGCCCTCCAATTCCATTCCGTCAGTTTCTCCAGAAGCCGATTCAAACGCATGGAGTCGCTTTCACCTCCGTCATTCCTCCGGAAAATTCTTCAAGGAAAGGCGGTATTTGTTGAAGGAATTTCCTGAACTAGTTTCTTGTAAGAAGTATTGTAAAGTTTTGGAGGTGGGTTGTGGTAATGGAAGCACCGTTATTCCAATCTTGCGGTTAGCTTTCATTCAGGGGTGA

Coding sequence (CDS)

ATGGGGGAAGCCGCCGAATATTTCTCCAAAGACTTCCAATGGGACGATCTTCGAATTCGGGTCGAGAACGACCCGAATTTGCAATACCATTTGCTTCCATTTGAGCCCTCCAATTCCATTCCGTCAGTTTCTCCAGAAGCCGATTCAAACGCATGGAGTCGCTTTCACCTCCGTCATTCCTCCGGAAAATTCTTCAAGGAAAGGCGGTATTTGTTGAAGGAATTTCCTGAACTAGTTTCTTGTAAGAAGTATTGTAAAGTTTTGGAGGTGGGTTGTGGTAATGGAAGCACCGTTATTCCAATCTTGCGGTTAGCTTTCATTCAGGGGTGA

Protein sequence

MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHSSGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILRLAFIQG*

Homology

[Close]

BLAST of MELO3C004417 vs. TrEMBL
Match: A0A0A0LG62_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009600 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.3e-54
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS 60
           MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNS+PSVSPEADSNAWSRFHLRHS
Sbjct: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSVPSVSPEADSNAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 103

[Close]

BLAST of MELO3C004417 vs. TrEMBL
Match: B9I5L8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04160g PE=4 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-33
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 5   AEYFSKDFQWDDLRIRVENDPNLQYHLLPFE--PSNSIPSVSPEADSNAWSRFHLRHSSG 64
           AEYFSKDF+W+ LR  +E++P+ QYHLLPF   P +    +    DS AW RFHLRHSSG
Sbjct: 9   AEYFSKDFEWETLRQEIEDNPSYQYHLLPFTCTPPSQQQEIQVSEDSKAWKRFHLRHSSG 68

Query: 65  KFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           KFFKERRYLLKEFPELVSCK++ KVLEVGCGNGS+ IPILR
Sbjct: 69  KFFKERRYLLKEFPELVSCKEFSKVLEVGCGNGSSAIPILR 109

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BLAST of MELO3C004417 vs. TrEMBL
Match: B9S7I9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0608090 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 3   EAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHSSG 62
           E A YFSKDF+W+ L+  +EN+P+  YH LPF  S+S+       DSNAW RFH+RHS+G
Sbjct: 8   EEANYFSKDFEWETLKQEIENNPSFSYHFLPFV-SSSLAHGQESGDSNAWQRFHVRHSTG 67

Query: 63  KFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           +FFKERRYLLKEFPELVSC+ + KVLEVGCGNGS+VIPILR
Sbjct: 68  RFFKERRYLLKEFPELVSCRDFSKVLEVGCGNGSSVIPILR 107

[Close]

BLAST of MELO3C004417 vs. TrEMBL
Match: V4VS91_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021195mg PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-32
Identity = 71/102 (69.61%), Postives = 81/102 (79.41%), Query Frame = 1


Query: 4   AAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEA--DSNAWSRFHLRHSS 63
           A EY SKDF+W+ L+  +ENDP+LQYHLLP+   NS P  + EA  DS+AW RFH RHSS
Sbjct: 9   AGEYHSKDFEWETLKQEIENDPSLQYHLLPY---NSSPEAAQEAEKDSDAWKRFHSRHSS 68

Query: 64  GKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           GKFFKERRYLLKEFPELVSC    K+LEVGCGNGST +PILR
Sbjct: 69  GKFFKERRYLLKEFPELVSCGGSSKLLEVGCGNGSTALPILR 107

[Close]

BLAST of MELO3C004417 vs. TrEMBL
Match: A0A067JIB8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23529 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.0e-32
Identity = 68/99 (68.69%), Postives = 79/99 (79.80%), Query Frame = 1


Query: 5   AEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHSSGKF 64
           AEYFSKDF+W+ L+  VE++P+ QYHLLPF  S     +    DS AW RFH+RHSSGKF
Sbjct: 8   AEYFSKDFEWETLKHEVESNPSFQYHLLPFNSSQRQHEIE---DSKAWQRFHVRHSSGKF 67

Query: 65  FKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           FKERRYLLKEFPELVSC  + +VLEVGCGNGS+VIPILR
Sbjct: 68  FKERRYLLKEFPELVSCGDFSRVLEVGCGNGSSVIPILR 103

[Close]

BLAST of MELO3C004417 vs. TAIR10
Match: AT1G54650.2 (AT1G54650.2 Methyltransferase family protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-29
Identity = 63/101 (62.38%), Postives = 72/101 (71.29%), Query Frame = 1


Query: 3   EAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHSSG 62
           EA EY SKDF+W+ L+  VENDP+L +HL       ++    P  DS  W  FH RHSSG
Sbjct: 6   EAGEYHSKDFEWEFLKNIVENDPSLSHHL--HHHHQNLSKYLP--DSQPWQDFHSRHSSG 65

Query: 63  KFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           KFFKERRYLLKEFPELVSC +  K+LE+GCGNGSTV+PILR
Sbjct: 66  KFFKERRYLLKEFPELVSCGENSKLLEIGCGNGSTVLPILR 102

[Close]

BLAST of MELO3C004417 vs. NCBI nr
Match: gi|659070733|ref|XP_008456399.1| (PREDICTED: methyltransferase-like protein 6 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 3.7e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS 60
           MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS
Sbjct: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 103

[Close]

BLAST of MELO3C004417 vs. NCBI nr
Match: gi|778666401|ref|XP_011648734.1| (PREDICTED: methyltransferase-like protein 6 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.8e-54
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHS 60
           MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNS+PSVSPEADSNAWSRFHLRHS
Sbjct: 1   MGEAAEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSVPSVSPEADSNAWSRFHLRHS 60

Query: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR
Sbjct: 61  SGKFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 103

[Close]

BLAST of MELO3C004417 vs. NCBI nr
Match: gi|470132410|ref|XP_004302075.1| (PREDICTED: methyltransferase-like protein 6 [Fragaria vesca subsp. vesca])

HSP 1 Score: 154.5 bits (389), Expect = 1.1e-34
Identity = 71/99 (71.72%), Postives = 84/99 (84.85%), Query Frame = 1


Query: 5   AEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEADSNAWSRFHLRHSSGKF 64
           AEYFSKDF+WD+LR+ VENDP+L YHL+PFEPS S+     EA+S  W+ FH RH+SGKF
Sbjct: 4   AEYFSKDFEWDELRVEVENDPSLSYHLVPFEPSLSVAE-EEEAESQPWNDFHHRHASGKF 63

Query: 65  FKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           FKERRYLL+EFPELV C++  KVLEVGCGNGSTV+PILR
Sbjct: 64  FKERRYLLQEFPELVGCEENSKVLEVGCGNGSTVLPILR 101

[Close]

BLAST of MELO3C004417 vs. NCBI nr
Match: gi|1009117558|ref|XP_015875382.1| (PREDICTED: methyltransferase-like protein 6 [Ziziphus jujuba])

HSP 1 Score: 151.4 bits (381), Expect = 9.4e-34
Identity = 69/101 (68.32%), Postives = 85/101 (84.16%), Query Frame = 1


Query: 5   AEYFSKDFQWDDLRIRVENDPNLQYHLLPFEPSNSIPSVSPEA--DSNAWSRFHLRHSSG 64
           A+Y SKDF+W++LR  VENDP+   HLLPF+P+++  S SP+A  DS+AW RFH+RHS+G
Sbjct: 19  AQYHSKDFEWEELRAEVENDPSFCQHLLPFQPTSTSSSSSPQAQSDSDAWKRFHIRHSAG 78

Query: 65  KFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           KFFKERRYLLKEFPEL SC +  KVLEVGCGNGSTV+P+LR
Sbjct: 79  KFFKERRYLLKEFPELASCNENSKVLEVGCGNGSTVLPLLR 119

[Close]

BLAST of MELO3C004417 vs. NCBI nr
Match: gi|566199358|ref|XP_006375845.1| (hypothetical protein POPTR_0013s04160g [Populus trichocarpa])

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 70/101 (69.31%), Postives = 81/101 (80.20%), Query Frame = 1


Query: 5   AEYFSKDFQWDDLRIRVENDPNLQYHLLPFE--PSNSIPSVSPEADSNAWSRFHLRHSSG 64
           AEYFSKDF+W+ LR  +E++P+ QYHLLPF   P +    +    DS AW RFHLRHSSG
Sbjct: 9   AEYFSKDFEWETLRQEIEDNPSYQYHLLPFTCTPPSQQQEIQVSEDSKAWKRFHLRHSSG 68

Query: 65  KFFKERRYLLKEFPELVSCKKYCKVLEVGCGNGSTVIPILR 104
           KFFKERRYLLKEFPELVSCK++ KVLEVGCGNGS+ IPILR
Sbjct: 69  KFFKERRYLLKEFPELVSCKEFSKVLEVGCGNGSSAIPILR 109

The following BLAST results are available for this feature:

BLAST of MELO3C004417 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG62_CUCSA	3.3e-54	99.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G009600 PE=4 SV=1	[more]
B9I5L8_POPTR	1.5e-33	69.31	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s04160g PE=4 SV=2	[more]
B9S7I9_RICCO	1.6e-32	66.34	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0608090 PE=4 SV=1	[more]
V4VS91_9ROSI	2.8e-32	69.61	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021195mg PE=4 SV=1	[more]
A0A067JIB8_JATCU	8.0e-32	68.69	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23529 PE=4 SV=1	[more]

BLAST of MELO3C004417 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54650.2	1.1e-29	62.38	Methyltransferase family protein	[more]

BLAST of MELO3C004417 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070733\|ref\|XP_008456399.1\|	3.7e-54	100.00	PREDICTED: methyltransferase-like protein 6 [Cucumis melo]	[more]
gi\|778666401\|ref\|XP_011648734.1\|	4.8e-54	99.03	PREDICTED: methyltransferase-like protein 6 [Cucumis sativus]	[more]
gi\|470132410\|ref\|XP_004302075.1\|	1.1e-34	71.72	PREDICTED: methyltransferase-like protein 6 [Fragaria vesca subsp. vesca]	[more]
gi\|1009117558\|ref\|XP_015875382.1\|	9.4e-34	68.32	PREDICTED: methyltransferase-like protein 6 [Ziziphus jujuba]	[more]
gi\|566199358\|ref\|XP_006375845.1\|	2.1e-33	69.31	hypothetical protein POPTR_0013s04160g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026113	MeTrfase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU45484	melon EST collection version 4.0	transcribed_cluster
MU62759	melon EST collection version 4.0	transcribed_cluster
MU65164	melon EST collection version 4.0	transcribed_cluster
MU65269	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004417T1	MELO3C004417T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU45484	MU45484	transcribed_cluster
MU65164	MU65164	transcribed_cluster
MU62759	MU62759	transcribed_cluster
MU65269	MU65269	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026113	Methyltransferase-like	PANTHER	PTHR22809	METHYLTRANSFERASE-RELATED	coord: 46..103 score: 3.4
None	No IPR available	PANTHER	PTHR22809:SF5	METHYLTRANSFERASE FAMILY PROTEIN	coord: 46..103 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C004417	Lsi11G004130	Bottle gourd (USVL1VR-Ls)	lsimeB115

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004417	Silver-seed gourd	carmeB0258
MELO3C004417	Silver-seed gourd	carmeB1042
MELO3C004417	Cucumber (Chinese Long) v3	cucmeB141
MELO3C004417	Watermelon (97103) v2	mewmbB376
MELO3C004417	Wax gourd	mewgoB454
MELO3C004417	Wax gourd	mewgoB466
MELO3C004417	Cucumber (Gy14) v1	cgymeB216
MELO3C004417	Cucurbita maxima (Rimu)	cmameB172
MELO3C004417	Cucurbita maxima (Rimu)	cmameB735
MELO3C004417	Cucurbita moschata (Rifu)	cmomeB161
MELO3C004417	Cucurbita moschata (Rifu)	cmomeB724
MELO3C004417	Wild cucumber (PI 183967)	cpimeB139
MELO3C004417	Cucumber (Chinese Long) v2	cumeB139
MELO3C004417	Watermelon (Charleston Gray)	mewcgB375
MELO3C004417	Watermelon (97103) v1	mewmB418
MELO3C004417	Cucurbita pepo (Zucchini)	cpemeB099
MELO3C004417	Cucurbita pepo (Zucchini)	cpemeB771
MELO3C004417	Cucumber (Gy14) v2	cgybmeB120