MELO3C004063 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C004063
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA recognition motif
Location	chr5 : 22520840 .. 22521292 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATGCTCAGGGAACAGCTTGATTCACCTTTCACATACAAACCTTTCCATGCTGAGAAAGCCCTTGTGTTCTTTGAAGACAGAAACCAGACCAAATTAATATGTAAAAATAGGGGATGGACAACTATGGGTAGGTTTTATGTGAAATTTGAAAAATGGAACCAAGAAAAGTATGTTACACCAAAGTTAGTTTCGAGTTATGGAGGTTGGATAAACTTCAGAGGTATACCATTACATGCTTGGAATCTGGATAGCTTTATCCAAATTGGGGATGTCTGTGGTGGTTATATTGATGTAGCTCGTGAAATAAGAGACATGAATGAGATCATTGAAGCCTCAATCAGGATCAAAGACACCTACACTGGGTTTATCCGTGCATTCATTAACCTGTTTGATAAAAAGGGGAAGAATTACATTGTTCAAACCCTAGTCCAAGCTGAAGGGAAATGA

mRNA sequence

ATGAATATGCTCAGGGAACAGCTTGATTCACCTTTCACATACAAACCTTTCCATGCTGAGAAAGCCCTTGTGTTCTTTGAAGACAGAAACCAGACCAAATTAATATGTAAAAATAGGGGATGGACAACTATGGGTAGGTTTTATGTGAAATTTGAAAAATGGAACCAAGAAAAGTATGTTACACCAAAGTTAGTTTCGAGTTATGGAGGTTGGATAAACTTCAGAGGTATACCATTACATGCTTGGAATCTGGATAGCTTTATCCAAATTGGGGATGTCTGTGGTGGTTATATTGATGTAGCTCGTGAAATAAGAGACATGAATGAGATCATTGAAGCCTCAATCAGGATCAAAGACACCTACACTGGGTTTATCCGTGCATTCATTAACCTGTTTGATAAAAAGGGGAAGAATTACATTGTTCAAACCCTAGTCCAAGCTGAAGGGAAATGA

Coding sequence (CDS)

ATGAATATGCTCAGGGAACAGCTTGATTCACCTTTCACATACAAACCTTTCCATGCTGAGAAAGCCCTTGTGTTCTTTGAAGACAGAAACCAGACCAAATTAATATGTAAAAATAGGGGATGGACAACTATGGGTAGGTTTTATGTGAAATTTGAAAAATGGAACCAAGAAAAGTATGTTACACCAAAGTTAGTTTCGAGTTATGGAGGTTGGATAAACTTCAGAGGTATACCATTACATGCTTGGAATCTGGATAGCTTTATCCAAATTGGGGATGTCTGTGGTGGTTATATTGATGTAGCTCGTGAAATAAGAGACATGAATGAGATCATTGAAGCCTCAATCAGGATCAAAGACACCTACACTGGGTTTATCCGTGCATTCATTAACCTGTTTGATAAAAAGGGGAAGAATTACATTGTTCAAACCCTAGTCCAAGCTGAAGGGAAATGA

Protein sequence

MNMLREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYVTPKLVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDTYTGFIRAFINLFDKKGKNYIVQTLVQAEGK*

Homology

[Close]

BLAST of MELO3C004063 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.1e-53
Identity = 92/147 (62.59%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 4   LREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYVTPK 63
           L EQLD+  +YKPFHA KAL+ F+D  Q  LICKN+GWTT+GRFYVKFE+WNQ+ + +PK
Sbjct: 150 LNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPK 209

Query: 64  LVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDTYTG 123
            V SYGGWI  R +PLHAWNL+SF+QIGD CGG+++VA+E R++ ++IEASIR+KD Y+G
Sbjct: 210 FVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 269

Query: 124 FIRAFINLFDKKGKNYIVQTLVQAEGK 151
           FI AFI L DK+ ++YI+Q +V+ EGK
Sbjct: 270 FIPAFIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004063 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.8e-48
Identity = 85/150 (56.67%), Postives = 120/150 (80.00%), Query Frame = 1


Query: 1   MNMLREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYV 60
           M  L+EQ +  FTYK FHAEKALV FE++ Q  ++CKNRGW  + +FY+KFE+WN  K+ 
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 61  TPKLVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDT 120
           +PKLV SYGGW+NFRGI +HAW++++F QIG+ CG +I++ REI+   EI +A +++K+ 
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

Query: 121 YTGFIRAFINLFDKKGKNYIVQTLVQAEGK 151
           +TGFI AFIN+FDKKG +++VQ++VQAEGK
Sbjct: 121 FTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004063 vs. TrEMBL
Match: A0A0A0KNC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.1e-35
Identity = 69/113 (61.06%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 1   MNMLREQLDS-PFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKY 60
           M  L+EQLD    TYK FHAEKA+VF E++N   L+CKNRGWTT+G+FYVKFE WN  K+
Sbjct: 189 MEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKH 248

Query: 61  VTPKLVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIE 113
            TPK++SSY GW+ F+GIPLHAWN  SF QIG+VCGG+++VAR  RD   +++
Sbjct: 249 ATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMK 301

[Close]

BLAST of MELO3C004063 vs. TrEMBL
Match: A0A0A0K120_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.9e-16
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MNMLREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYV 60
           M  L+EQLD   TYKPFHAEK  V  ED+N   L+CKNRGWTT+G++YVKFE  N  K+ 
Sbjct: 97  MAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHA 156

Query: 61  TPKLVSSYGG 71
           +PK + SYGG
Sbjct: 157 SPKCLPSYGG 166

[Close]

BLAST of MELO3C004063 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 215.3 bits (547), Expect = 7.3e-53
Identity = 92/147 (62.59%), Postives = 121/147 (82.31%), Query Frame = 1


Query: 4   LREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYVTPK 63
           L EQLD+  +YKPFHA KAL+ F+D  Q  LICKN+GWTT+GRFYVKFE+WNQ+ + +PK
Sbjct: 150 LNEQLDTTVSYKPFHANKALICFKDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPK 209

Query: 64  LVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDTYTG 123
            V SYGGWI  R +PLHAWNL+SF+QIGD CGG+++VA+E R++ ++IEASIR+KD Y+G
Sbjct: 210 FVPSYGGWIKVRAVPLHAWNLESFVQIGDACGGFMEVAKETRELTDLIEASIRVKDNYSG 269

Query: 124 FIRAFINLFDKKGKNYIVQTLVQAEGK 151
           FI AFI L DK+ ++YI+Q +V+ EGK
Sbjct: 270 FIPAFIKLIDKEERSYIIQVIVKTEGK 296

[Close]

BLAST of MELO3C004063 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 5.4e-48
Identity = 85/150 (56.67%), Postives = 120/150 (80.00%), Query Frame = 1


Query: 1   MNMLREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYV 60
           M  L+EQ +  FTYK FHAEKALV FE++ Q  ++CKNRGW  + +FY+KFE+WN  K+ 
Sbjct: 1   MRKLKEQTNWSFTYKSFHAEKALVSFENKYQATIMCKNRGWNPVDKFYIKFEEWNTMKHG 60

Query: 61  TPKLVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDT 120
           +PKLV SYGGW+NFRGI +HAW++++F QIG+ CG +I++ REI+   EI +A +++K+ 
Sbjct: 61  SPKLVPSYGGWVNFRGILMHAWDMETFTQIGEACGSFIEITREIKKQVEIRQAMLKVKEN 120

Query: 121 YTGFIRAFINLFDKKGKNYIVQTLVQAEGK 151
           +TGFI AFIN+FDKKG +++VQ++VQAEGK
Sbjct: 121 FTGFIPAFINVFDKKGNSFLVQSIVQAEGK 150

[Close]

BLAST of MELO3C004063 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 3.9e-38
Identity = 73/147 (49.66%), Postives = 99/147 (67.35%), Query Frame = 1


Query: 4   LREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYVTPK 63
           LR+Q +  FTY  FHA+KALV F       L+C+N+GWTT+G++ V+FEKW   ++ TPK
Sbjct: 223 LRKQTEESFTYNAFHADKALVHFSSSIPANLLCQNKGWTTVGKYSVRFEKWCPIQHATPK 282

Query: 64  LVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIEASIRIKDTYTG 123
           L+ SYGGW  FRGIPLH WN+ +F QIG  CGG I VA E R    +IEA I+I+  Y+G
Sbjct: 283 LIPSYGGWTIFRGIPLHLWNMKTFQQIGKACGGLIKVAEETRSAKNLIEAKIKIRYNYSG 342

Query: 124 FIRAFINLFDKKGKNYIVQTLVQAEGK 151
           F+ A + +FD +G  + +Q +   EGK
Sbjct: 343 FLPANVRIFDNEGNKFSIQVVTHPEGK 369

[Close]

BLAST of MELO3C004063 vs. NCBI nr
Match: gi|700195958|gb|KGN51135.1| (hypothetical protein Csa_5G465580 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 3.1e-35
Identity = 69/113 (61.06%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 1   MNMLREQLDS-PFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKY 60
           M  L+EQLD    TYK FHAEKA+VF E++N   L+CKNRGWTT+G+FYVKFE WN  K+
Sbjct: 189 MEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLLCKNRGWTTIGKFYVKFEAWNISKH 248

Query: 61  VTPKLVSSYGGWINFRGIPLHAWNLDSFIQIGDVCGGYIDVAREIRDMNEIIE 113
            TPK++SSY GW+ F+GIPLHAWN  SF QIG+VCGG+++VAR  RD   +++
Sbjct: 249 ATPKVLSSYVGWVKFKGIPLHAWNYSSFYQIGEVCGGFVEVARITRDTEWVMK 301

[Close]

BLAST of MELO3C004063 vs. NCBI nr
Match: gi|700187915|gb|KGN43148.1| (hypothetical protein Csa_7G004025 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 4.2e-16
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 1   MNMLREQLDSPFTYKPFHAEKALVFFEDRNQTKLICKNRGWTTMGRFYVKFEKWNQEKYV 60
           M  L+EQLD   TYKPFHAEK  V  ED+N   L+CKNRGWTT+G++YVKFE  N  K+ 
Sbjct: 97  MAKLQEQLDLNITYKPFHAEKVAVTIEDKNLVNLLCKNRGWTTVGKYYVKFEASNIAKHA 156

Query: 61  TPKLVSSYGG 71
           +PK + SYGG
Sbjct: 157 SPKCLPSYGG 166

The following BLAST results are available for this feature:

BLAST of MELO3C004063 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GB30_CUCME	5.1e-53	62.59	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0KFP0_CUCSA	3.8e-48	56.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1	[more]
A0A0A0KNC5_CUCSA	2.1e-35	61.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G465580 PE=4 SV=1	[more]
A0A0A0K120_CUCSA	2.9e-16	60.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004025 PE=4 SV=1	[more]

BLAST of MELO3C004063 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307135793\|gb\|ADN33672.1\|	7.3e-53	62.59	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|700192460\|gb\|KGN47664.1\|	5.4e-48	56.67	hypothetical protein Csa_6G367105 [Cucumis sativus]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	3.9e-38	49.66	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|700195958\|gb\|KGN51135.1\|	3.1e-35	61.06	hypothetical protein Csa_5G465580 [Cucumis sativus]	[more]
gi\|700187915\|gb\|KGN43148.1\|	4.2e-16	60.00	hypothetical protein Csa_7G004025 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025558	DUF4283

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004063T1	MELO3C004063T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025558	Domain of unknown function DUF4283	PFAM	PF14111	DUF4283	coord: 17..116 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C004063	Cucumber (Gy14) v1	cgymeB105
MELO3C004063	Cucurbita maxima (Rimu)	cmameB078
MELO3C004063	Cucurbita maxima (Rimu)	cmameB176
MELO3C004063	Cucurbita maxima (Rimu)	cmameB737
MELO3C004063	Cucurbita moschata (Rifu)	cmomeB071
MELO3C004063	Cucurbita moschata (Rifu)	cmomeB165
MELO3C004063	Cucurbita moschata (Rifu)	cmomeB725
MELO3C004063	Wild cucumber (PI 183967)	cpimeB139
MELO3C004063	Cucumber (Chinese Long) v2	cumeB074
MELO3C004063	Cucumber (Chinese Long) v2	cumeB139
MELO3C004063	Watermelon (Charleston Gray)	mewcgB367
MELO3C004063	Watermelon (97103) v1	mewmB422
MELO3C004063	Watermelon (97103) v1	mewmB435
MELO3C004063	Cucurbita pepo (Zucchini)	cpemeB103
MELO3C004063	Cucurbita pepo (Zucchini)	cpemeB342
MELO3C004063	Cucurbita pepo (Zucchini)	cpemeB779
MELO3C004063	Bottle gourd (USVL1VR-Ls)	lsimeB115
MELO3C004063	Bottle gourd (USVL1VR-Ls)	lsimeB417
MELO3C004063	Cucumber (Gy14) v2	cgybmeB120
MELO3C004063	Silver-seed gourd	carmeB0062
MELO3C004063	Cucumber (Chinese Long) v3	cucmeB141
MELO3C004063	Watermelon (97103) v2	mewmbB369
MELO3C004063	Watermelon (97103) v2	mewmbB393
MELO3C004063	Wax gourd	mewgoB453