MELO3C004037 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C004037
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionATP-dependent RNA helicase RhlB
Locationchr5 : 22135533 .. 22135877 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

mRNA sequence

ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

Coding sequence (CDS)

ATGATTGGTAATGCAACAACCAATTTTTCTGACATTATAGTTATTGGCGAAAGAATTGAATATGGGATAAAGCACCAGAGGTTAGCAGAGGCTATAACTGAATATGGTGGAATAAAGAAAGGAACAATATCTAAGAAGAAAGAAGGAGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAAGCACAAATCAATTTTTGGTCAGAGAAAACATGAGCAAAACTTTCCGTCATATATAAGCAATGTTTCTCATATCCCTTATAATAACTATGTACGAGCCAATACCTTCTCTGAAACTCCAAAACCCGTTAACTCAAATTCTCCTCGACCATTTGTACAGGATTAA

Protein sequence

MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQD*
Homology
[Close]
BLAST of MELO3C004037 vs. NCBI nr
Match: gi|659131240|ref|XP_008465582.1| (PREDICTED: uncharacterized protein LOC103503218 [Cucumis melo])

HSP 1 Score: 211.8 bits (538), Expect = 6.1e-52
Identity = 103/113 (91.15%), Postives = 107/113 (94.69%), Query Frame = 1 

Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVH IGFPNSG
Sbjct: 242 MIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKKEGEVHGIGFPNSG 301

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SET KPVNSNSPRPFVQ
Sbjct: 302 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSETSKPVNSNSPRPFVQ 354

[Close]
BLAST of MELO3C004037 vs. NCBI nr
Match: gi|659123179|ref|XP_008461534.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103500105 [Cucumis melo])

HSP 1 Score: 210.3 bits (534), Expect = 1.8e-51
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFSDIIVIGERIEYGIKH RL EA TEYGGIKKGTISKKKEGEVHAIGFPN G
Sbjct: 224 MIGNASTNFSDIIVIGERIEYGIKHGRLVEATTEYGGIKKGTISKKKEGEVHAIGFPNLG 283

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNV HIPYN+Y+ A+T SETPKPVNSNSPRPFVQ
Sbjct: 284 KHKSIFGQRKYEQNFPSYISNVYHIPYNSYISAHTVSETPKPVNSNSPRPFVQ 336

[Close]
BLAST of MELO3C004037 vs. NCBI nr
Match: gi|659131252|ref|XP_008465589.1| (PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo])

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-50
Identity = 101/113 (89.38%), Postives = 106/113 (93.81%), Query Frame = 1 

Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           MIGNA+TNFS+IIVIGERIEYGIKH RLAEA TEYGGIKKGTISKKKEGEVHAIGFPNSG
Sbjct: 287 MIGNASTNFSNIIVIGERIEYGIKHGRLAEAKTEYGGIKKGTISKKKEGEVHAIGFPNSG 346

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           KHKSIFGQRK+EQNFPSYISNVSHIPYN+YV A+T SE PK  NSNSPRPFVQ
Sbjct: 347 KHKSIFGQRKYEQNFPSYISNVSHIPYNSYVPAHTVSEAPKLFNSNSPRPFVQ 399

[Close]
BLAST of MELO3C004037 vs. NCBI nr
Match: gi|659127206|ref|XP_008463580.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501689 [Cucumis melo])

HSP 1 Score: 191.8 bits (486), Expect = 6.6e-46
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 1 

Query: 1   MIGNATTNFSDIIVIGERIEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSG 60
           M GNA+TNFS+IIVIGERIEYGIKH++LAEA TEYGG +KGTISKKKEGEVHAIGFPNSG
Sbjct: 339 MSGNASTNFSNIIVIGERIEYGIKHEKLAEATTEYGGKEKGTISKKKEGEVHAIGFPNSG 398

Query: 61  KHKSIFGQRKHEQNFPSYISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           K+KSIFGQRK+E+NF S ISNVSHI YN+YV  +TF ETPKPVNSNSP+PFVQ
Sbjct: 399 KYKSIFGQRKYEKNFLSCISNVSHISYNSYVSTHTFFETPKPVNSNSPQPFVQ 451

[Close]
BLAST of MELO3C004037 vs. NCBI nr
Match: gi|659129309|ref|XP_008464622.1| (PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 82/95 (86.32%), Postives = 89/95 (93.68%), Query Frame = 1 

Query: 19  IEYGIKHQRLAEAITEYGGIKKGTISKKKEGEVHAIGFPNSGKHKSIFGQRKHEQNFPSY 78
           IEYGIKH RLA+A TEYG IKKGTISKKKE EVHAIGFPNSGKHKSIFGQRK+EQNFPSY
Sbjct: 243 IEYGIKHGRLAKATTEYGRIKKGTISKKKEEEVHAIGFPNSGKHKSIFGQRKYEQNFPSY 302

Query: 79  ISNVSHIPYNNYVRANTFSETPKPVNSNSPRPFVQ 114
           ISNVS+IPYN+YV A+T SETPKPVNSNSP+PFV+
Sbjct: 303 ISNVSYIPYNSYVLAHTVSETPKPVNSNSPQPFVK 337

The following BLAST results are available for this feature:
BLAST of MELO3C004037 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131240|ref|XP_008465582.1|6.1e-5291.15PREDICTED: uncharacterized protein LOC103503218 [Cucumis melo][more]
gi|659123179|ref|XP_008461534.1|1.8e-5189.38PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103500105 [Cucumis me... [more]
gi|659131252|ref|XP_008465589.1|3.4e-5089.38PREDICTED: uncharacterized protein LOC103503225 [Cucumis melo][more]
gi|659127206|ref|XP_008463580.1|6.6e-4682.30PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501689 [Cucumis me... [more]
gi|659129309|ref|XP_008464622.1|1.6e-3986.32PREDICTED: uncharacterized protein LOC103502461 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004037T1MELO3C004037T1mRNA