MELO3C003985 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003985
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
Description30S ribosomal protein S7
Locationchr5 : 21084090 .. 21084556 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACGTCGAGGTACTGCAGAAGAAACAATTGCAAAATTCGATCCAATTTATTATAATCGATCAGTTAACATGTTGGTTAACCGTATTTTAAAACATGGAAAGAAATCATTGGCTTATCAAATTATCTATCGAGCCATGAAAAGATTCAACAAAAGACATAAACAAATCCACTATCTATTTTATGTCAAACAATACGTGGAGTAACTCCCGATATAGTAGTAAAGGCAAGATGTGTAGGCGGATCAACTCATCAAGTTCCCATTGAAATAGGATCCACACAAAGAAAAGCACTTGCCATTCGTTGGTTATTAGGAGCATCCCGAAAACGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGATTTTGCACATTTTCGTTAA

mRNA sequence

ATGTCACGTCGAGGAGCATCCCGAAAACGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGATTTTGCACATTTTCGTTAA

Coding sequence (CDS)

ATGTCACGTCGAGGAGCATCCCGAAAACGTCGGGGTCGAAATATCGCTTTCAAATTAAGTTCTGAATTAGTGGATGCTGCCAAAGGGAGTGGCGATGCCATACGTAAAAAGGAAGAGACTCATAGAATGGCAAAGGCAAATAGAGATTTTGCACATTTTCGTTAA

Protein sequence

MSRRGASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR*
Homology
[Close]
BLAST of MELO3C003985 vs. Swiss-Prot
Match: RR7_BRANA (30S ribosomal protein S7, chloroplastic OS=Brassica napus GN=rps7 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. Swiss-Prot
Match: RR7_MANES (30S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. Swiss-Prot
Match: RR7_NANDO (30S ribosomal protein S7, chloroplastic OS=Nandina domestica GN=rps7-A PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. Swiss-Prot
Match: RR7_NASOF (30S ribosomal protein S7, chloroplastic OS=Nasturtium officinale GN=rps7-A PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. Swiss-Prot
Match: RR7_GOSHI (30S ribosomal protein S7, chloroplastic OS=Gossypium hirsutum GN=rps7-A PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TrEMBL
Match: Q67IN3_9LILI (30S ribosomal protein S7, chloroplastic OS=Burmannia capitata GN=rps7 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRAGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TrEMBL
Match: A0ARS4_9POAL (Ribosomal protein S7 OS=Flagellaria indica GN=rps7 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRTFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TrEMBL
Match: A0A158USQ6_9FABA (Ribosomal protein S7 OS=Indigofera tinctoria GN=rps7 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.1e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRTFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TrEMBL
Match: A0A0K0VIS9_9LILI (Ribosomal protein S7 OS=Xerophyta retinervis GN=rps7 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TrEMBL
Match: H9TUI6_9ASPA (Ribosomal protein S7 (Fragment) OS=Neoastelia spectabilis GN=rps7 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.4e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TAIR10
Match: ATCG01240.1 (ATCG01240.1 ribosomal protein S7)

HSP 1 Score: 92.8 bits (229), Expect = 7.0e-20
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. TAIR10
Match: ATCG00900.1 (ATCG00900.1 Ribosomal protein S7p/S5e family protein)

HSP 1 Score: 92.8 bits (229), Expect = 7.0e-20
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. NCBI nr
Match: gi|37721183|gb|AAN31970.1| (ribosomal protein S7 (chloroplast) [Burmannia capitata])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRAGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. NCBI nr
Match: gi|45454104|gb|AAS65718.1| (ribosomal protein S7 (chloroplast) [Flagellaria indica])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRTFAHFR 155

[Close]
BLAST of MELO3C003985 vs. NCBI nr
Match: gi|948299653|ref|YP_009179115.1| (ribosomal protein S7 (chloroplast) [Ostrya rehderiana])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. NCBI nr
Match: gi|757609152|ref|WP_042854974.1| (30S ribosomal protein S7 [Staphylococcus aureus])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

[Close]
BLAST of MELO3C003985 vs. NCBI nr
Match: gi|669100496|ref|YP_009048620.1| (30S ribosomal protein S7 [Paris verticillata])

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 

Query: 5   GASRKRRGRNIAFKLSSELVDAAKGSGDAIRKKEETHRMAKANRDFAHFR 55
           GASRKR GRN+AFKLSSELVDAAKGSGDAIRKKEETHRMA+ANR FAHFR
Sbjct: 106 GASRKRPGRNMAFKLSSELVDAAKGSGDAIRKKEETHRMAEANRAFAHFR 155

The following BLAST results are available for this feature:
BLAST of MELO3C003985 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR7_BRANA1.2e-1892.0030S ribosomal protein S7, chloroplastic OS=Brassica napus GN=rps7 PE=3 SV=1[more]
RR7_MANES1.2e-1892.0030S ribosomal protein S7, chloroplastic OS=Manihot esculenta GN=rps7-A PE=3 SV=1[more]
RR7_NANDO1.2e-1892.0030S ribosomal protein S7, chloroplastic OS=Nandina domestica GN=rps7-A PE=3 SV=1[more]
RR7_NASOF1.2e-1892.0030S ribosomal protein S7, chloroplastic OS=Nasturtium officinale GN=rps7-A PE=3 ... [more]
RR7_GOSHI1.2e-1892.0030S ribosomal protein S7, chloroplastic OS=Gossypium hirsutum GN=rps7-A PE=3 SV=... [more]
BLAST of MELO3C003985 vs. TrEMBL
Match NameE-valueIdentityDescription
Q67IN3_9LILI1.1e-1692.0030S ribosomal protein S7, chloroplastic OS=Burmannia capitata GN=rps7 PE=3 SV=1[more]
A0ARS4_9POAL1.1e-1692.00Ribosomal protein S7 OS=Flagellaria indica GN=rps7 PE=3 SV=1[more]
A0A158USQ6_9FABA1.1e-1692.00Ribosomal protein S7 OS=Indigofera tinctoria GN=rps7 PE=4 SV=1[more]
A0A0K0VIS9_9LILI1.4e-1692.00Ribosomal protein S7 OS=Xerophyta retinervis GN=rps7 PE=3 SV=1[more]
H9TUI6_9ASPA1.4e-1692.00Ribosomal protein S7 (Fragment) OS=Neoastelia spectabilis GN=rps7 PE=3 SV=1[more]
BLAST of MELO3C003985 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01240.17.0e-2092.00ATCG01240.1 ribosomal protein S7[more]
ATCG00900.17.0e-2092.00ATCG00900.1 Ribosomal protein S7p/S5e family protein[more]
BLAST of MELO3C003985 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|37721183|gb|AAN31970.1|1.5e-1692.00ribosomal protein S7 (chloroplast) [Burmannia capitata][more]
gi|45454104|gb|AAS65718.1|1.5e-1692.00ribosomal protein S7 (chloroplast) [Flagellaria indica][more]
gi|948299653|ref|YP_009179115.1|2.0e-1692.00ribosomal protein S7 (chloroplast) [Ostrya rehderiana][more]
gi|757609152|ref|WP_042854974.1|2.0e-1692.0030S ribosomal protein S7 [Staphylococcus aureus][more]
gi|669100496|ref|YP_009048620.1|2.0e-1692.0030S ribosomal protein S7 [Paris verticillata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000235Ribosomal_S5/S7
IPR023798Ribosomal_S7_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003985T1MELO3C003985T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000235Ribosomal protein S5/S7PANTHERPTHR11205RIBOSOMAL PROTEIN S7coord: 6..54
score: 4.4
IPR023798Ribosomal protein S7 domainGENE3DG3DSA:1.10.455.10coord: 6..54
score: 1.5
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 6..48
score: 3.2
IPR023798Ribosomal protein S7 domainunknownSSF47973Ribosomal protein S7coord: 6..54
score: 1.96

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003985Cucurbita pepo (Zucchini)cpemeB777
MELO3C003985Bottle gourd (USVL1VR-Ls)lsimeB115
MELO3C003985Bottle gourd (USVL1VR-Ls)lsimeB419
MELO3C003985Cucumber (Gy14) v2cgybmeB067
MELO3C003985Cucumber (Gy14) v2cgybmeB120
MELO3C003985Silver-seed gourdcarmeB0619
MELO3C003985Silver-seed gourdcarmeB0786
MELO3C003985Silver-seed gourdcarmeB0970
MELO3C003985Cucumber (Chinese Long) v3cucmeB080
MELO3C003985Cucumber (Chinese Long) v3cucmeB141
MELO3C003985Watermelon (97103) v2mewmbB369
MELO3C003985Watermelon (97103) v2mewmbB399
MELO3C003985Wax gourdmewgoB453
MELO3C003985Wax gourdmewgoB492
MELO3C003985Melon (DHL92) v3.5.1memeB110
MELO3C003985Cucumber (Gy14) v1cgymeB088
MELO3C003985Cucumber (Gy14) v1cgymeB105
MELO3C003985Cucurbita maxima (Rimu)cmameB075
MELO3C003985Cucurbita maxima (Rimu)cmameB175
MELO3C003985Cucurbita maxima (Rimu)cmameB737
MELO3C003985Cucurbita moschata (Rifu)cmomeB068
MELO3C003985Cucurbita moschata (Rifu)cmomeB164
MELO3C003985Cucurbita moschata (Rifu)cmomeB725
MELO3C003985Wild cucumber (PI 183967)cpimeB074
MELO3C003985Wild cucumber (PI 183967)cpimeB139
MELO3C003985Cucumber (Chinese Long) v2cumeB075
MELO3C003985Cucumber (Chinese Long) v2cumeB139
MELO3C003985Watermelon (Charleston Gray)mewcgB367
MELO3C003985Watermelon (Charleston Gray)mewcgB397
MELO3C003985Watermelon (97103) v1mewmB422
MELO3C003985Watermelon (97103) v1mewmB440
MELO3C003985Cucurbita pepo (Zucchini)cpemeB100
MELO3C003985Cucurbita pepo (Zucchini)cpemeB344