MELO3C003883 (gene) Melon (DHL92) v3.5.1

NameMELO3C003883
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein
Locationchr4 : 6119702 .. 6119887 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

mRNA sequence

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Coding sequence (CDS)

ATGTCCCAGGATGATGTACGCGCTTCACACCCTGCTCGCGCATCGAAGGGTCGGCCTGGATCTAATGGATCAAAGCGATGGAGGGGAGGGCAGCGGGTGGGTGCAATTAAGATTACTCATCAGGCACTGGAGTGTGCAAATAACCAGCTGAGGTTAATTGCAGAGTGGCCTTCGCACGCACTATAA

Protein sequence

MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL*
BLAST of MELO3C003883 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.3e-10
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1

Query: 3   QDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL 62
           QDDVRAS P+RAS+G+ GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+  L
Sbjct: 502 QDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNL 560

BLAST of MELO3C003883 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1

Query: 3   QDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHAL 62
           QDDVRAS P+RAS+G+ GS+GSKR RG QR   ++  H AL+  N QLR IAEWP+  L
Sbjct: 502 QDDVRASRPSRASEGKTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQIAEWPARNL 560

BLAST of MELO3C003883 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 3.8e-08
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1

Query: 1   MSQDDVRASHPARASKGRPGSNGSKRWRGGQRVGAIKITHQALECANNQLRLIAEWPSHA 60
           MSQ+DV AS PA  S  R  S+  KR RG Q+ G IK+ H AL+C N+QL+ I EW + A
Sbjct: 234 MSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARA 293

Query: 61  L 62
           L
Sbjct: 294 L 294

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GBB2_CUCME8.3e-1059.32Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135889|gb|ADN33754.1|1.2e-0959.32retrotransposon protein [Cucumis melo subsp. melo][more]
gi|659093712|ref|XP_008447677.1|3.8e-0852.46PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003883T1MELO3C003883T1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None