MELO3C003866 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003866
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-pol polyprotein
Locationchr4 : 5853324 .. 5853900 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGTTCATAATTATGAATTGTTTAAGATGGATGTTAATGAGATTATCACCGATATATTTAACTAGATTTACTAACATTATAAATGGATTGAAGGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

mRNA sequence

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Coding sequence (CDS)

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Protein sequence

MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPLPRII*
Homology
[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: W1NQ11_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.4e-30
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLED 73
           LGKV T  +   KILRSL K +  KV AIQEAKDL+ LP EELIGSLM HEI M    E+
Sbjct: 166 LGKVLTQKDMVTKILRSLTKAYQGKVVAIQEAKDLSTLPLEELIGSLMNHEIFMSAQEEE 225

Query: 74  E-SKKNKSVALKTIFLE-VDPKDEDDL--DENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 133
           E  KK K++A K+     +  +DE+ L  D  D+A FS+KYK F+K KK F K      +
Sbjct: 226 EVEKKKKTIAFKSSSSHAISEEDEESLCSDMEDLALFSKKYKKFMKFKKNFGKKPQRGSD 285

Query: 134 SKDEKSKKDEVICYECKRSGHIRTDCPL 158
           SK+ KSK D  IC+ECK+ GH++ DCP+
Sbjct: 286 SKERKSKDDPPICFECKKPGHMKMDCPM 313

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5B1P9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012360 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 71/161 (44.10%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLED 73
           LGK Y   E   KILRSLP  W+ KVTAIQEAKDLTKLP EELIGSLMT+EI +   L++
Sbjct: 82  LGKTYKESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELIGSLMTYEINLTKKLQE 141

Query: 74  ESKKNKSVALKTIFLEVDPKDEDDLDE-------NDIAYFSRKYKNFIKRKKYFKKHMSS 133
              KNK    K I L+   K+E+D++E       ND+A  +RK   F++ +++ ++  +S
Sbjct: 142 GEDKNK----KNITLKATTKEEEDVEEEKPSDEDNDLALITRKLNKFMRGERFRERKFTS 201

Query: 134 QKESKDEKS----------KKDEVICYECKRSGHIRTDCPL 158
           +++   ++S          +K E+ C++CK+SGHI+ DCPL
Sbjct: 202 RRDPSKKESLSHGDNEKWEEKRELTCFKCKKSGHIKYDCPL 238

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5AQM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.1e-27
Identity = 81/202 (40.10%), Postives = 113/202 (55.94%), Query Frame = 1 

Query: 2   NQLKESKLNML------------------------------GLGKVYTTFENSRKILRSL 61
           NQ+KESK+N+L                               LGKV    E   KILRSL
Sbjct: 122 NQVKESKINILVHNYELFSMKETESIVEMITRFTEIVNGLEALGKVIXESEKVIKILRSL 181

Query: 62  PKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHL-EDESKKNKSVALKTIFLEV 121
           P  W+ KVTAIQEAKDLTKLP EEL+GSLMT+EI +   L E E KK KS+ALK    E 
Sbjct: 182 PSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQLQESEDKKKKSIALKATTKEE 241

Query: 122 DPKDED--DLDENDIAYFSRKYKNFI-----KRKKYFKKHMSSQKES-----KDEKSKKD 161
           +  +E+    +++D+A  +RK   ++     + KK+  +   S++ES     K++   K 
Sbjct: 242 EDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESSSHGDKEKWEXKG 301

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.7e-27
Identity = 79/202 (39.11%), Postives = 113/202 (55.94%), Query Frame = 1 

Query: 2   NQLKESKLNML------------------------------GLGKVYTTFENSRKILRSL 61
           NQ+KESK+N+L                               LG+V    E   KILRSL
Sbjct: 122 NQVKESKINILVHNYELFSMKETETIVEMITRFTEIVNGLEALGRVINESEKVMKILRSL 181

Query: 62  PKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEI-IMKMHLEDESKKNKSVALKTIFLEV 121
           P  W+ KVTAIQEAKDLTKLP EEL+GSLMT+EI + K   E E KK K++ALK    E 
Sbjct: 182 PSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQPQESEDKKKKNIALKATTKEE 241

Query: 122 DPKDED--DLDENDIAYFSRKYKNFI-----KRKKYFKKHMSSQKES-----KDEKSKKD 161
           +  +E+    +++D+A  +RK   ++     + KK+  +   S++ES     K++  +K 
Sbjct: 242 EDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESSSHGDKEKWEEKS 301

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5BLR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007707 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEI-IMKMHLE 73
           L K Y   E   KILRSLP  W+ KVT IQEAKDLTKLP EELIGSLMT+EI + K   E
Sbjct: 153 LEKTYKESEKVMKILRSLPSKWHTKVTTIQEAKDLTKLPMEELIGSLMTYEINLAKKLQE 212

Query: 74  DESKKNKSVALKTIFLEVDPKDED--DLDENDIAYFSRKYKNFIKR-----KKYFKKHMS 133
            E KK KS+ALK I  E +  +E+    +++D+A+ +RK   +++      +K+  +   
Sbjct: 213 GEDKKKKSIALKAITKEEEDVEEEKPSEEDDDLAFITRKLNKYMRXEXFRGRKFTSRRDP 272

Query: 134 SQKES-----KDEKSKKDEVICYECKRSGHIRTDCPL 158
           S+KES     K++  +K +++C++CK+ GHI+ DCPL
Sbjct: 273 SKKESSSHGDKEKWXEKKDLVCFKCKKPGHIKYDCPL 309

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 1 

Query: 10  NMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKM 69
           ++ GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK 
Sbjct: 160 DLKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKE 219

Query: 70  HLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 129
           HLEDESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKE
Sbjct: 220 HLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKE 279

Query: 130 SKDEKSKKDEVICYECKRSGHIRTDCPL 158
           SK EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 280 SKGEKSKKDEVICYECKRSGHIRTDCPL 307

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 163 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 222

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 223 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 282

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 283 EKSKKDEVICYECKRSGHIRTDCPL 307

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 96  GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 155

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 156 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 215

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 216 EKSKKDEVICYECKRSGHIRTDCPL 240

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 133 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 192

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 193 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 252

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 253 EKSKKDEVICYECKRSGHIRTDCPL 277

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 163 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 222

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 223 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 282

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 283 EKSKKDEVICYECKRSGHIRTDCPL 307

The following BLAST results are available for this feature:
BLAST of MELO3C003866 vs. TrEMBL
Match NameE-valueIdentityDescription
W1NQ11_AMBTC8.4e-3051.35Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=... [more]
A5B1P9_VITVI1.0e-2744.10Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012360 PE=4 SV=1[more]
A5AQM5_VITVI5.1e-2740.10Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1[more]
A5C8K0_VITVI8.7e-2739.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BLR1_VITVI1.5e-2645.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007707 PE=4 SV=1[more]
BLAST of MELO3C003866 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688574|ref|XP_011652782.1|3.0e-6888.51PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778665012|ref|XP_011648465.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778708527|ref|XP_011656224.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
gi|778730802|ref|XP_011659859.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003866T1MELO3C003866T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 134..159
score: 6.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 141..156
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 142..156
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 126..158
score: 1.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..95
score: 6.4E-12coord: 111..156
score: 6.4
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 11..95
score: 6.4E-12coord: 111..156
score: 6.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 11..68
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003866Watermelon (97103) v2mewmbB332
MELO3C003866Wax gourdmewgoB384
MELO3C003866Cucumber (Gy14) v1cgymeB559
MELO3C003866Cucurbita maxima (Rimu)cmameB032
MELO3C003866Cucurbita maxima (Rimu)cmameB424
MELO3C003866Cucurbita moschata (Rifu)cmomeB021
MELO3C003866Cucurbita moschata (Rifu)cmomeB414
MELO3C003866Wild cucumber (PI 183967)cpimeB215
MELO3C003866Cucumber (Chinese Long) v2cumeB222
MELO3C003866Watermelon (Charleston Gray)mewcgB331
MELO3C003866Watermelon (97103) v1mewmB368
MELO3C003866Cucurbita pepo (Zucchini)cpemeB516
MELO3C003866Cucurbita pepo (Zucchini)cpemeB726
MELO3C003866Bottle gourd (USVL1VR-Ls)lsimeB311
MELO3C003866Cucumber (Gy14) v2cgybmeB185
MELO3C003866Silver-seed gourdcarmeB0106
MELO3C003866Silver-seed gourdcarmeB0928
MELO3C003866Cucumber (Chinese Long) v3cucmeB219