MELO3C003866 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003866
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionGag-pol polyprotein
Locationchr4 : 5853324 .. 5853900 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGTTCATAATTATGAATTGTTTAAGATGGATGTTAATGAGATTATCACCGATATATTTAACTAGATTTACTAACATTATAAATGGATTGAAGGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

mRNA sequence

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Coding sequence (CDS)

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Protein sequence

MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPLPRII*
Homology
[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: W1NQ11_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 8.4e-30
Identity = 76/148 (51.35%), Postives = 96/148 (64.86%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLED 73
           LGKV T  +   KILRSL K +  KV AIQEAKDL+ LP EELIGSLM HEI M    E+
Sbjct: 166 LGKVLTQKDMVTKILRSLTKAYQGKVVAIQEAKDLSTLPLEELIGSLMNHEIFMSAQEEE 225

Query: 74  E-SKKNKSVALKTIFLE-VDPKDEDDL--DENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 133
           E  KK K++A K+     +  +DE+ L  D  D+A FS+KYK F+K KK F K      +
Sbjct: 226 EVEKKKKTIAFKSSSSHAISEEDEESLCSDMEDLALFSKKYKKFMKFKKNFGKKPQRGSD 285

Query: 134 SKDEKSKKDEVICYECKRSGHIRTDCPL 158
           SK+ KSK D  IC+ECK+ GH++ DCP+
Sbjct: 286 SKERKSKDDPPICFECKKPGHMKMDCPM 313

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5B1P9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012360 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 71/161 (44.10%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLED 73
           LGK Y   E   KILRSLP  W+ KVTAIQEAKDLTKLP EELIGSLMT+EI +   L++
Sbjct: 82  LGKTYKESEKVMKILRSLPSKWHTKVTAIQEAKDLTKLPMEELIGSLMTYEINLTKKLQE 141

Query: 74  ESKKNKSVALKTIFLEVDPKDEDDLDE-------NDIAYFSRKYKNFIKRKKYFKKHMSS 133
              KNK    K I L+   K+E+D++E       ND+A  +RK   F++ +++ ++  +S
Sbjct: 142 GEDKNK----KNITLKATTKEEEDVEEEKPSDEDNDLALITRKLNKFMRGERFRERKFTS 201

Query: 134 QKESKDEKS----------KKDEVICYECKRSGHIRTDCPL 158
           +++   ++S          +K E+ C++CK+SGHI+ DCPL
Sbjct: 202 RRDPSKKESLSHGDNEKWEEKRELTCFKCKKSGHIKYDCPL 238

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5AQM5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.1e-27
Identity = 81/202 (40.10%), Postives = 113/202 (55.94%), Query Frame = 1 

Query: 2   NQLKESKLNML------------------------------GLGKVYTTFENSRKILRSL 61
           NQ+KESK+N+L                               LGKV    E   KILRSL
Sbjct: 122 NQVKESKINILVHNYELFSMKETESIVEMITRFTEIVNGLEALGKVIXESEKVIKILRSL 181

Query: 62  PKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHL-EDESKKNKSVALKTIFLEV 121
           P  W+ KVTAIQEAKDLTKLP EEL+GSLMT+EI +   L E E KK KS+ALK    E 
Sbjct: 182 PSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQLQESEDKKKKSIALKATTKEE 241

Query: 122 DPKDED--DLDENDIAYFSRKYKNFI-----KRKKYFKKHMSSQKES-----KDEKSKKD 161
           +  +E+    +++D+A  +RK   ++     + KK+  +   S++ES     K++   K 
Sbjct: 242 EDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESSSHGDKEKWEXKG 301

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5C8K0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 8.7e-27
Identity = 79/202 (39.11%), Postives = 113/202 (55.94%), Query Frame = 1 

Query: 2   NQLKESKLNML------------------------------GLGKVYTTFENSRKILRSL 61
           NQ+KESK+N+L                               LG+V    E   KILRSL
Sbjct: 122 NQVKESKINILVHNYELFSMKETETIVEMITRFTEIVNGLEALGRVINESEKVMKILRSL 181

Query: 62  PKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEI-IMKMHLEDESKKNKSVALKTIFLEV 121
           P  W+ KVTAIQEAKDLTKLP EEL+GSLMT+EI + K   E E KK K++ALK    E 
Sbjct: 182 PSKWHTKVTAIQEAKDLTKLPMEELLGSLMTYEISLTKQPQESEDKKKKNIALKATTKEE 241

Query: 122 DPKDED--DLDENDIAYFSRKYKNFI-----KRKKYFKKHMSSQKES-----KDEKSKKD 161
           +  +E+    +++D+A  +RK   ++     + KK+  +   S++ES     K++  +K 
Sbjct: 242 EDVEEEKPSEEDDDLALITRKLNKYMRGERFRGKKFTSRRNPSRRESSSHGDKEKWEEKS 301

[Close]
BLAST of MELO3C003866 vs. TrEMBL
Match: A5BLR1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007707 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-26
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 1 

Query: 14  LGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEI-IMKMHLE 73
           L K Y   E   KILRSLP  W+ KVT IQEAKDLTKLP EELIGSLMT+EI + K   E
Sbjct: 153 LEKTYKESEKVMKILRSLPSKWHTKVTTIQEAKDLTKLPMEELIGSLMTYEINLAKKLQE 212

Query: 74  DESKKNKSVALKTIFLEVDPKDED--DLDENDIAYFSRKYKNFIKR-----KKYFKKHMS 133
            E KK KS+ALK I  E +  +E+    +++D+A+ +RK   +++      +K+  +   
Sbjct: 213 GEDKKKKSIALKAITKEEEDVEEEKPSEEDDDLAFITRKLNKYMRXEXFRGRKFTSRRDP 272

Query: 134 SQKES-----KDEKSKKDEVICYECKRSGHIRTDCPL 158
           S+KES     K++  +K +++C++CK+ GHI+ DCPL
Sbjct: 273 SKKESSSHGDKEKWXEKKDLVCFKCKKPGHIKYDCPL 309

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778688574|ref|XP_011652782.1| (PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 3.0e-68
Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 1 

Query: 10  NMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKM 69
           ++ GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK 
Sbjct: 160 DLKGLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKE 219

Query: 70  HLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 129
           HLEDESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKE
Sbjct: 220 HLEDESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKE 279

Query: 130 SKDEKSKKDEVICYECKRSGHIRTDCPL 158
           SK EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 280 SKGEKSKKDEVICYECKRSGHIRTDCPL 307

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778665012|ref|XP_011648465.1| (PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 163 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 222

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 223 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 282

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 283 EKSKKDEVICYECKRSGHIRTDCPL 307

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778708527|ref|XP_011656224.1| (PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 96  GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 155

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 156 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 215

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 216 EKSKKDEVICYECKRSGHIRTDCPL 240

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778730824|ref|XP_011659862.1| (PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 133 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 192

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 193 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 252

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 253 EKSKKDEVICYECKRSGHIRTDCPL 277

[Close]
BLAST of MELO3C003866 vs. NCBI nr
Match: gi|778730802|ref|XP_011659859.1| (PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.9e-68
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 1 

Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 163 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 222

Query: 73  DESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK KS+ALKTI LEVDP+DED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 223 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 282

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 158
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 283 EKSKKDEVICYECKRSGHIRTDCPL 307

The following BLAST results are available for this feature:
BLAST of MELO3C003866 vs. TrEMBL
Match NameE-valueIdentityDescription
W1NQ11_AMBTC8.4e-3051.35Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s01117p00010120 PE=4 SV=... [more]
A5B1P9_VITVI1.0e-2744.10Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012360 PE=4 SV=1[more]
A5AQM5_VITVI5.1e-2740.10Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030841 PE=4 SV=1[more]
A5C8K0_VITVI8.7e-2739.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001808 PE=4 SV=1[more]
A5BLR1_VITVI1.5e-2645.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007707 PE=4 SV=1[more]
BLAST of MELO3C003866 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688574|ref|XP_011652782.1|3.0e-6888.51PREDICTED: uncharacterized protein LOC105435092 [Cucumis sativus][more]
gi|778665012|ref|XP_011648465.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105434474 [Cucumis sativus][more]
gi|778708527|ref|XP_011656224.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105435679 [Cucumis sativus][more]
gi|778730824|ref|XP_011659862.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105436307, partial [Cucumis sativus][more]
gi|778730802|ref|XP_011659859.1|3.9e-6890.34PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003866T1MELO3C003866T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 134..159
score: 6.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 141..156
score: 1.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 142..156
score: 9
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 126..158
score: 1.4
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 11..95
score: 6.4E-12coord: 111..156
score: 6.4
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 11..95
score: 6.4E-12coord: 111..156
score: 6.4
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 11..68
score: 1.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003866Wild cucumber (PI 183967)cpimeB215
MELO3C003866Cucumber (Chinese Long) v2cumeB222
MELO3C003866Watermelon (Charleston Gray)mewcgB331
MELO3C003866Watermelon (97103) v1mewmB368
MELO3C003866Cucurbita pepo (Zucchini)cpemeB516
MELO3C003866Cucurbita pepo (Zucchini)cpemeB726
MELO3C003866Bottle gourd (USVL1VR-Ls)lsimeB311
MELO3C003866Cucumber (Gy14) v2cgybmeB185
MELO3C003866Silver-seed gourdcarmeB0106
MELO3C003866Silver-seed gourdcarmeB0928
MELO3C003866Cucumber (Chinese Long) v3cucmeB219
MELO3C003866Watermelon (97103) v2mewmbB332
MELO3C003866Wax gourdmewgoB384
MELO3C003866Cucumber (Gy14) v1cgymeB559
MELO3C003866Cucurbita maxima (Rimu)cmameB032
MELO3C003866Cucurbita maxima (Rimu)cmameB424
MELO3C003866Cucurbita moschata (Rifu)cmomeB021
MELO3C003866Cucurbita moschata (Rifu)cmomeB414