MELO3C003865.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003865.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glycine-rich cell wall structural protein 1-like
Location	chr04 : 5833749 .. 5833976 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

mRNA sequence

ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

Coding sequence (CDS)

ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

Protein sequence

THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIPTMYSQGFDMSQDDV

Homology

[Close]

BLAST of MELO3C003865.2 vs. NCBI nr
Match: XP_008444620.1 (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.3e-18
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 2   HLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIP 61
           H  AK LLN   PYY++LAYVF +DRA  RG ETF D+ SN    YE FQ  DGNDMEIP
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 62  TMYSQGFDMSQDDV 76
           T+YSQGF+MSQ+DV
Sbjct: 92  TIYSQGFNMSQEDV 105

[Close]

BLAST of MELO3C003865.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.8e-15
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   AAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGL-GGYERFQMLDGNDMEIPT 63
           AAKGLLN P PYY++L YVFGRDRA  R  ETF DV SN   GGY+RF M DGN+ + P 
Sbjct: 434 AAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPP 493

Query: 64  MYSQGFDMSQDDV 76
           +YS+G D+ QDDV
Sbjct: 494 VYSRGVDILQDDV 505

[Close]

BLAST of MELO3C003865.2 vs. NCBI nr
Match: ABQ53639.1 (transposase [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEI 60
           TH AAKGLLN   PYY++L YVF RDR   +G +TF++V SN    YE FQ  D NDM+ 
Sbjct: 277 THPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKN 336

Query: 61  PTMYSQGFDMS 72
           PTMYSQGF+MS
Sbjct: 337 PTMYSQGFNMS 347

[Close]

BLAST of MELO3C003865.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.3e-09
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGY-ERFQMLDGNDME 60
           +H AAKGLL+   PYY+ L+YVFG+DRA    +ETF +V SN    + +   + D +D +
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 61  IPTMYSQGFDMSQDDV 76
           IPTMYSQG  MS D++
Sbjct: 174 IPTMYSQGVHMSPDEM 189

[Close]

BLAST of MELO3C003865.2 vs. NCBI nr
Match: XP_016900727.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 5   AKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIPTM 64
           AK LLN P  YY++LAY F RD++  R  ETF +V SN   GYE F + DGNDME P+M
Sbjct: 205 AKCLLNKPFSYYDELAYAFERDKSRGRFVETFANVGSNEPVGYEEFDVPDGNDMEFPSM 263

[Close]

BLAST of MELO3C003865.2 vs. TrEMBL
Match: tr|A0A1S3BAQ2|A0A1S3BAQ2_CUCME (uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-18
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 2   HLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIP 61
           H  AK LLN   PYY++LAYVF +DRA  RG ETF D+ SN    YE FQ  DGNDMEIP
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 62  TMYSQGFDMSQDDV 76
           T+YSQGF+MSQ+DV
Sbjct: 92  TIYSQGFNMSQEDV 105

[Close]

BLAST of MELO3C003865.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.8e-15
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 4   AAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGL-GGYERFQMLDGNDMEIPT 63
           AAKGLLN P PYY++L YVFGRDRA  R  ETF DV SN   GGY+RF M DGN+ + P 
Sbjct: 434 AAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPP 493

Query: 64  MYSQGFDMSQDDV 76
           +YS+G D+ QDDV
Sbjct: 494 VYSRGVDILQDDV 505

[Close]

BLAST of MELO3C003865.2 vs. TrEMBL
Match: tr|A5Y732|A5Y732_CUCME (Transposase OS=Cucumis melo OX=3656 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.6e-15
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEI 60
           TH AAKGLLN   PYY++L YVF RDR   +G +TF++V SN    YE FQ  D NDM+ 
Sbjct: 277 THPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKN 336

Query: 61  PTMYSQGFDMS 72
           PTMYSQGF+MS
Sbjct: 337 PTMYSQGFNMS 347

[Close]

BLAST of MELO3C003865.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.3e-10
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGY-ERFQMLDGNDME 60
           +H AAKGLL+   PYY+ L+YVFG+DRA    +ETF +V SN    + +   + D +D +
Sbjct: 114 SHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDED 173

Query: 61  IPTMYSQGFDMSQDDV 76
           IPTMYSQG  MS D++
Sbjct: 174 IPTMYSQGVHMSPDEM 189

[Close]

BLAST of MELO3C003865.2 vs. TrEMBL
Match: tr|A0A1S4DXM4|A0A1S4DXM4_CUCME (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC107991003 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.2e-09
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 5   AKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIPTM 64
           AK LLN P  YY++LAY F RD++  R  ETF +V SN   GYE F + DGNDME P+M
Sbjct: 205 AKCLLNKPFSYYDELAYAFERDKSRGRFVETFANVGSNEPVGYEEFDVPDGNDMEFPSM 263

The following BLAST results are available for this feature:

BLAST of MELO3C003865.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008444620.1	3.3e-18	64.86	PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo]	[more]
ADN33754.1	5.8e-15	63.01	retrotransposon protein [Cucumis melo subsp. melo]	[more]
ABQ53639.1	1.3e-14	60.56	transposase [Cucumis melo]	[more]
XP_008441954.1	1.3e-09	48.68	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]	[more]
XP_016900727.1	1.4e-08	55.93	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]

BLAST of MELO3C003865.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C003865.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C003865.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAQ2\|A0A1S3BAQ2_CUCME	2.2e-18	64.86	uncharacterized protein LOC103487886 OS=Cucumis melo OX=3656 GN=LOC103487886 PE=...	[more]
tr\|E5GBB2\|E5GBB2_CUCME	3.8e-15	63.01	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A5Y732\|A5Y732_CUCME	8.6e-15	60.56	Transposase OS=Cucumis melo OX=3656 PE=4 SV=1	[more]
tr\|A0A1S3B4L3\|A0A1S3B4L3_CUCME	8.3e-10	48.68	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
tr\|A0A1S4DXM4\|A0A1S4DXM4_CUCME	9.2e-09	55.93	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003865.2.1	MELO3C003865.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003865.2	Cucumber (Gy14) v1	cgymedB560
MELO3C003865.2	Cucurbita maxima (Rimu)	cmamedB031
MELO3C003865.2	Cucurbita maxima (Rimu)	cmamedB487
MELO3C003865.2	Cucurbita moschata (Rifu)	cmomedB020
MELO3C003865.2	Cucurbita moschata (Rifu)	cmomedB474
MELO3C003865.2	Cucurbita pepo (Zucchini)	cpemedB614
MELO3C003865.2	Cucurbita pepo (Zucchini)	cpemedB859
MELO3C003865.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C003865.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C003865.2	Bottle gourd (USVL1VR-Ls)	lsimedB325
MELO3C003865.2	Watermelon (Charleston Gray)	medwcgB325
MELO3C003865.2	Watermelon (97103) v1	medwmB364
MELO3C003865.2	Silver-seed gourd	carmedB0108
MELO3C003865.2	Silver-seed gourd	carmedB0934
MELO3C003865.2	Cucumber (Chinese Long) v3	cucmedB212
MELO3C003865.2	Watermelon (97103) v2	medwmbB319
MELO3C003865.2	Wax gourd	medwgoB386
MELO3C003865.2	Cucumber (Gy14) v2	cgybmedB186