MELO3C003865 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003865
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_92
Locationchr4 : 5833392 .. 5833619 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

mRNA sequence

ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

Coding sequence (CDS)

ACACATCTTGCAGCGAAGGGCCTCCTGAACATACCGCTTCCCTATTACAACAAACTGGCATATGTGTTTGGGAGGGATAGGGCGATAGATCGAGGTACAGAGACTTTCATCGACGTTCGATCCAATGGCCTTGGTGGGTACGAGAGATTTCAAATGCTTGATGGAAACGATATGGAGATTCCCACCATGTACAGCCAAGGGTTTGACATGTCCCAGGATGATGTATGA

Protein sequence

THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIPTMYSQGFDMSQDDV*
Homology
[Close]
BLAST of MELO3C003865 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-15
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 4   AAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGL-GGYERFQMLDGNDMEIPT 63
           AAKGLLN P PYY++L YVFGRDRA  R  ETF DV SN   GGY+RF M DGN+ + P 
Sbjct: 434 AAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPP 493

Query: 64  MYSQGFDMSQDDV 76
           +YS+G D+ QDDV
Sbjct: 494 VYSRGVDILQDDV 505

[Close]
BLAST of MELO3C003865 vs. TrEMBL
Match: A5Y732_CUCME (Transposase OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.3e-14
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEI 60
           TH AAKGLLN   PYY++L YVF RDR   +G +TF++V SN    YE FQ  D NDM+ 
Sbjct: 277 THPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKN 336

Query: 61  PTMYSQGFDMS 72
           PTMYSQGF+MS
Sbjct: 337 PTMYSQGFNMS 347

[Close]
BLAST of MELO3C003865 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-08
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1 

Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEI 60
           +H AAKGLLN    +Y++L+YVFG+DRA     E+F D+ SN   GY+        D + 
Sbjct: 466 SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDF 525

Query: 61  PTMYSQGFDMSQDDV 76
           P MYS G +MS DD+
Sbjct: 526 PPMYSPGLNMSPDDL 540

[Close]
BLAST of MELO3C003865 vs. NCBI nr
Match: gi|659068476|ref|XP_008444620.1| (PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 5.0e-18
Identity = 48/74 (64.86%), Postives = 55/74 (74.32%), Query Frame = 1 

Query: 2   HLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIP 61
           H  AK LLN   PYY++LAYVF +DRA  RG ETF D+ SN    YE FQ  DGNDMEIP
Sbjct: 32  HPVAKALLNKSFPYYDELAYVFKKDRATGRGVETFTDIGSNDPSRYEGFQPPDGNDMEIP 91

Query: 62  TMYSQGFDMSQDDV 76
           T+YSQGF+MSQ+DV
Sbjct: 92  TIYSQGFNMSQEDV 105

[Close]
BLAST of MELO3C003865 vs. NCBI nr
Match: gi|307135889|gb|ADN33754.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-15
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1 

Query: 4   AAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGL-GGYERFQMLDGNDMEIPT 63
           AAKGLLN P PYY++L YVFGRDRA  R  ETF DV SN   GGY+RF M DGN+ + P 
Sbjct: 434 AAKGLLNNPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPP 493

Query: 64  MYSQGFDMSQDDV 76
           +YS+G D+ QDDV
Sbjct: 494 VYSRGVDILQDDV 505

[Close]
BLAST of MELO3C003865 vs. NCBI nr
Match: gi|148270941|gb|ABQ53639.1| (transposase [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-14
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 

Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEI 60
           TH AAKGLLN   PYY++L YVF RDR   +G +TF++V SN    YE FQ  D NDM+ 
Sbjct: 277 THPAAKGLLNKLFPYYDELVYVFERDRVTGQGVKTFVNVESNDPIEYEGFQTPDENDMKN 336

Query: 61  PTMYSQGFDMS 72
           PTMYSQGF+MS
Sbjct: 337 PTMYSQGFNMS 347

[Close]
BLAST of MELO3C003865 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-12
Identity = 41/72 (56.94%), Postives = 51/72 (70.83%), Query Frame = 1 

Query: 4   AAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGYERFQMLDGNDMEIPTM 63
           ++KGLLN   PYY++LAY+F RDR  DR  ETF D+ SN    YE F M DGN+ E  ++
Sbjct: 169 SSKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE-EFSSI 228

Query: 64  YSQGFDMSQDDV 76
           YSQG DMSQ+DV
Sbjct: 229 YSQGIDMSQEDV 239

[Close]
BLAST of MELO3C003865 vs. NCBI nr
Match: gi|659111565|ref|XP_008455793.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 1   THLAAKGLLNIPLPYYNKLAYVFGRDRAIDRGTETFIDVRSNGLGGY-ERFQMLDGNDME 60
           +H A KGLL+   PYY+ L YVFG+DRA    +ETF+DV SN    + +   + D +D +
Sbjct: 63  SHPATKGLLHKSFPYYDDLTYVFGKDRATGARSETFVDVGSNVPNMFNDTIPLGDSHDED 122

Query: 61  IPTMYSQGFDMSQDDV 76
           IPTMYSQG  +S D++
Sbjct: 123 IPTMYSQGVHISPDEM 138

The following BLAST results are available for this feature:
BLAST of MELO3C003865 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GBB2_CUCME6.1e-1563.01Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5Y732_CUCME2.3e-1460.56Transposase OS=Cucumis melo PE=4 SV=1[more]
E5GCB5_CUCME2.5e-0845.33Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
BLAST of MELO3C003865 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068476|ref|XP_008444620.1|5.0e-1864.86PREDICTED: uncharacterized protein LOC103487886 [Cucumis melo][more]
gi|307135889|gb|ADN33754.1|8.8e-1563.01retrotransposon protein [Cucumis melo subsp. melo][more]
gi|148270941|gb|ABQ53639.1|3.3e-1460.56transposase [Cucumis melo][more]
gi|659093712|ref|XP_008447677.1|1.4e-1256.94PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo][more]
gi|659111565|ref|XP_008455793.1|1.5e-0947.37PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003865T1MELO3C003865T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003865Silver-seed gourdcarmeB0106
MELO3C003865Silver-seed gourdcarmeB0928
MELO3C003865Cucumber (Chinese Long) v3cucmeB219
MELO3C003865Watermelon (97103) v2mewmbB332
MELO3C003865Wax gourdmewgoB384
MELO3C003865Cucumber (Gy14) v1cgymeB559
MELO3C003865Cucurbita maxima (Rimu)cmameB032
MELO3C003865Cucurbita maxima (Rimu)cmameB424
MELO3C003865Cucurbita moschata (Rifu)cmomeB021
MELO3C003865Cucurbita moschata (Rifu)cmomeB414
MELO3C003865Wild cucumber (PI 183967)cpimeB215
MELO3C003865Cucumber (Chinese Long) v2cumeB222
MELO3C003865Watermelon (Charleston Gray)mewcgB331
MELO3C003865Watermelon (97103) v1mewmB368
MELO3C003865Cucurbita pepo (Zucchini)cpemeB516
MELO3C003865Cucurbita pepo (Zucchini)cpemeB726
MELO3C003865Bottle gourd (USVL1VR-Ls)lsimeB311
MELO3C003865Cucumber (Gy14) v2cgybmeB185