MELO3C003864 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003864
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transcriptional repressor NrdR
Location	chr4 : 5833042 .. 5833302 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

mRNA sequence

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

Coding sequence (CDS)

ATGATACATGAGGCATTGGAGTATGCGAATGACCAGCTGAGGGCCATTGTCGAGTTGCCTTTGCGGACACTTCAGGATGAGACCACAATTCGCAAGGAAGTCCTTCGTCAATTGAATGCGATGCCCGATCTAAGTAGGTTGGATAGGGCACACTGCTCGGAGAGCCTCTTTCGTAGTTTGGACGACATGCATGGCTTCATTGAGATAATGGAAGAGGAGAGGATGGACTACTGCACAGTCCTCCTACGAGAAGACCCATGA

Protein sequence

MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSLDDMHGFIEIMEEERMDYCTVLLREDP*

Homology

[Close]

BLAST of MELO3C003864 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.7e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           ++  A+EY N+QL  I E P+   QD T  R+E++R L A+P+L+ +DR      L R++
Sbjct: 572 IVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNV 631

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           DDM  F+E+ +  +  YC+++L+E+
Sbjct: 632 DDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of MELO3C003864 vs. TrEMBL
Match: A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +I   ++Y NDQ  AIVE P    Q +     EV++QL A+P+LS  DR     +L  ++
Sbjct: 21  IIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMCNV 80

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
            DM    EI  E ++DYCTV+L ++
Sbjct: 81  HDMKALWEISNELKLDYCTVMLEDN 105

[Close]

BLAST of MELO3C003864 vs. NCBI nr
Match: gi|659093712|ref|XP_008447677.1| (PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-12
Identity = 38/84 (45.24%), Postives = 54/84 (64.29%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +IH AL+  NDQL+ IVE   R L + T + +E +R L  M +LS LDRA C   L   +
Sbjct: 271 VIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHM 330

Query: 61  DDMHGFIEIMEEERMDYCTVLLRE 85
           DDM GF+++  +ER ++C VLLR+
Sbjct: 331 DDMWGFVQMTNDERQNFCRVLLRD 354

[Close]

BLAST of MELO3C003864 vs. NCBI nr
Match: gi|307136287|gb|ADN34114.1| (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 75.1 bits (183), Expect = 6.8e-11
Identity = 32/85 (37.65%), Postives = 55/85 (64.71%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           ++  A+EY N+QL  I E P+   QD T  R+E++R L A+P+L+ +DR      L R++
Sbjct: 572 IVRTAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNV 631

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           DDM  F+E+ +  +  YC+++L+E+
Sbjct: 632 DDMKAFLEVPDHMKYPYCSLILQEN 656

[Close]

BLAST of MELO3C003864 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 74.7 bits (182), Expect = 8.8e-11
Identity = 31/85 (36.47%), Postives = 54/85 (63.53%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           ++  A+EY N+QL  I E P+   QD T  R+E++RQL A+P+L+ +DR      +  ++
Sbjct: 424 IVRIAIEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHNI 483

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           DDM  F+E+ +  +  YC ++L+E+
Sbjct: 484 DDMKAFLEVPDNMKYSYCNIILQEN 508

[Close]

BLAST of MELO3C003864 vs. NCBI nr
Match: gi|659123900|ref|XP_008461893.1| (PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-08
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           ++  A+EY N+QL  I E  +   QD T  R+EV+RQL A+P+L+ +DR      L  ++
Sbjct: 166 ILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPELTLMDRCRLMRILIHNV 225

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
           +DM  F+E+ +  +  YC+++L E+
Sbjct: 226 NDMKAFLEVPDNMK-PYCSIILEEN 249

[Close]

BLAST of MELO3C003864 vs. NCBI nr
Match: gi|700203303|gb|KGN58436.1| (hypothetical protein Csa_3G643760 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 1   MIHEALEYANDQLRAIVELPLRTLQDETTIRKEVLRQLNAMPDLSRLDRAHCSESLFRSL 60
           +I   ++Y NDQ  AIVE P    Q +     EV++QL A+P+LS  DR     +L  ++
Sbjct: 21  IIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMCNV 80

Query: 61  DDMHGFIEIMEEERMDYCTVLLRED 86
            DM    EI  E ++DYCTV+L ++
Sbjct: 81  HDMKALWEISNELKLDYCTVMLEDN 105

The following BLAST results are available for this feature:

BLAST of MELO3C003864 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	4.7e-11	37.65	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LEB9_CUCSA	2.4e-07	38.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1	[more]

BLAST of MELO3C003864 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659093712\|ref\|XP_008447677.1\|	6.1e-12	45.24	PREDICTED: uncharacterized protein LOC103490086 [Cucumis melo]	[more]
gi\|307136287\|gb\|ADN34114.1\|	6.8e-11	37.65	retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|659133698\|ref\|XP_008466863.1\|	8.8e-11	36.47	PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo]	[more]
gi\|659123900\|ref\|XP_008461893.1\|	5.4e-08	36.47	PREDICTED: uncharacterized protein LOC103500387 [Cucumis melo]	[more]
gi\|700203303\|gb\|KGN58436.1\|	3.5e-07	38.82	hypothetical protein Csa_3G643760 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003864T1	MELO3C003864T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003864	Cucurbita pepo (Zucchini)	cpemeB726
MELO3C003864	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C003864	Cucumber (Gy14) v2	cgybmeB185
MELO3C003864	Silver-seed gourd	carmeB0106
MELO3C003864	Silver-seed gourd	carmeB0928
MELO3C003864	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003864	Watermelon (97103) v2	mewmbB332
MELO3C003864	Wax gourd	mewgoB384
MELO3C003864	Cucumber (Gy14) v1	cgymeB559
MELO3C003864	Cucurbita maxima (Rimu)	cmameB032
MELO3C003864	Cucurbita maxima (Rimu)	cmameB424
MELO3C003864	Cucurbita moschata (Rifu)	cmomeB021
MELO3C003864	Cucurbita moschata (Rifu)	cmomeB414
MELO3C003864	Wild cucumber (PI 183967)	cpimeB215
MELO3C003864	Cucumber (Chinese Long) v2	cumeB222
MELO3C003864	Watermelon (Charleston Gray)	mewcgB331
MELO3C003864	Watermelon (97103) v1	mewmB368
MELO3C003864	Cucurbita pepo (Zucchini)	cpemeB516