MELO3C003841 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003841
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative retrotransposon gag protein
Locationchr4 : 5419466 .. 5419744 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGCAAACCAATGATCAGGTTCAAGCAATTCGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGGTCCTGAAATTGCTCACTACTAGAAGAGAAAAGAGAGTTGTGGAGACTTCATCACAAGTGGAAGTTGATCTGAACAAGGTACTAGAGAACATACCTGCATACCCTCCGGGTTTTATTCCTCAAAGATCGTCCAGTCCACGCATGGCGAATATGACATATCCTACATCCTTTCTCACGCAAAATCCTAACCCGACCTCACAATAG

mRNA sequence

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAATTCGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGGTCCTGAAATTGCTCACTACTAGAAGAGAAAAGAGAGTTGTGGAGACTTCATCACAAGTGGAAGTTGATCTGAACAAGGTACTAGAGAACATACCTGCATACCCTCCGGGTTTTATTCCTCAAAGATCGTCCAGTCCACGCATGGCGAATATGACATATCCTACATCCTTTCTCACGCAAAATCCTAACCCGACCTCACAATAG

Coding sequence (CDS)

ATGGATGAGCAAACCAATGATCAGGTTCAAGCAATTCGTCAAGACATTGAAGGATTGAAAGATCAATTGGCAAAGGTCCTGAAATTGCTCACTACTAGAAGAGAAAAGAGAGTTGTGGAGACTTCATCACAAGTGGAAGTTGATCTGAACAAGGTACTAGAGAACATACCTGCATACCCTCCGGGTTTTATTCCTCAAAGATCGTCCAGTCCACGCATGGCGAATATGACATATCCTACATCCTTTCTCACGCAAAATCCTAACCCGACCTCACAATAG

Protein sequence

MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYPPGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ*
Homology
[Close]
BLAST of MELO3C003841 vs. NCBI nr
Match: gi|659102853|ref|XP_008452348.1| (PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-30
Identity = 69/92 (75.00%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 1  MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYP 60
          MDEQTNDQVQA+RQD+EGLKDQLAK+L+LLTT R K V  TSSQVEVDLN+VLE+I AYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGTSSQVEVDLNQVLEDILAYP 60

Query: 61 PGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ 93
          P F PQR SSPRM + TYPTSF   NPN T+Q
Sbjct: 61 PSFTPQRPSSPRMVDRTYPTSFPAPNPNTTTQ 92

[Close]
BLAST of MELO3C003841 vs. NCBI nr
Match: gi|659122237|ref|XP_008461036.1| (PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 5.0e-28
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYP 60
          MDEQTNDQVQA+ QD+EGL+DQL K+L+LLTT R K V  TSSQVEVDLN+VLE++ AY 
Sbjct: 1  MDEQTNDQVQAVCQDVEGLEDQLKKILELLTTGRGKNVAGTSSQVEVDLNQVLEDMSAYL 60

Query: 61 PGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ 93
          PGF PQRSSSPRM + TYPTSF   NPN T+Q
Sbjct: 61 PGFTPQRSSSPRMVDRTYPTSFPMPNPNTTTQ 92

[Close]
BLAST of MELO3C003841 vs. NCBI nr
Match: gi|659093710|ref|XP_008447676.1| (PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-27
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1  MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYP 60
          MDEQTNDQVQA+RQD+EGLKDQLAK+L+LLT  R K V   SSQVEVDLN+VLE++PAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELLTIGRGKSVTGISSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ 93
          PGF PQRSSSPRM       ++ TQNPNP +Q
Sbjct: 61 PGFTPQRSSSPRM-------TYSTQNPNPITQ 85

[Close]
BLAST of MELO3C003841 vs. NCBI nr
Match: gi|659114599|ref|XP_008457136.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-27
Identity = 64/92 (69.57%), Postives = 76/92 (82.61%), Query Frame = 1 

Query: 1  MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYP 60
          MDEQ+NDQVQA+RQD+EGLKDQLAK+L+LLTT R K V   SSQVEVDLN+VLE++  YP
Sbjct: 1  MDEQSNDQVQAVRQDVEGLKDQLAKILELLTTGRGKSVAGISSQVEVDLNQVLEDMTTYP 60

Query: 61 PGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ 93
          PGF PQ+SSSPR+ + TYP    TQNPN T+Q
Sbjct: 61 PGFTPQQSSSPRIVDRTYP----TQNPNTTTQ 88

[Close]
BLAST of MELO3C003841 vs. NCBI nr
Match: gi|659130442|ref|XP_008465174.1| (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 9.4e-27
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 1  MDEQTNDQVQAIRQDIEGLKDQLAKVLKLLTTRREKRVVETSSQVEVDLNKVLENIPAYP 60
          MDEQTNDQVQA+RQD+EGLKDQLAK+L+L TT R K V   SSQVEVDLN+VLE++PAYP
Sbjct: 1  MDEQTNDQVQAVRQDVEGLKDQLAKILELFTTGRRKSVAGISSQVEVDLNQVLEDMPAYP 60

Query: 61 PGFIPQRSSSPRMANMTYPTSFLTQNPNPTSQ 93
           GF PQRSSSPR   MTYP    TQNPNP +Q
Sbjct: 61 IGFTPQRSSSPR---MTYP----TQNPNPITQ 85

The following BLAST results are available for this feature:
BLAST of MELO3C003841 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102853|ref|XP_008452348.1|5.3e-3075.00PREDICTED: uncharacterized protein LOC103493407 [Cucumis melo][more]
gi|659122237|ref|XP_008461036.1|5.0e-2871.74PREDICTED: uncharacterized protein LOC103499741 [Cucumis melo][more]
gi|659093710|ref|XP_008447676.1|9.4e-2770.65PREDICTED: uncharacterized protein LOC103490085 [Cucumis melo][more]
gi|659114599|ref|XP_008457136.1|9.4e-2769.57PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103496882 [Cucumis me... [more]
gi|659130442|ref|XP_008465174.1|9.4e-2772.83PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003841T1MELO3C003841T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 2..29
scor