MELO3C003741 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003741
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Vacuolar protein sorting-associated protein 35
Location	chr4 : 3762049 .. 3762938 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTATCGGTTGGAATTGAAGACGAAGAGAAATGGCTGGCCGAAGGAATCGCCGGAATTCAACACAATGCCTTCTACATGCATCAAGCCATGGTATCTCCAACTTCCTTTTTTTTTTCAAATTCAGACCTTCAATCTATTGAAAAAAAAGGAGGAAAAAACCCTAATCTCTCCATTCTTATTGACGTTTTTCATCTCAGGATGCGAATAGTCTCAGAGAAGGACTTAAATACTCGGCTCAGATGCTTTCAGAACTTCGAACTTCGAAGCTTTCACCACACAGATATTACGAACTCTGTAAATTTCTATTTACCAATAAATCAATCCTTTGTGTAACGACTGGATCGGTTCCTTGAAATGAGATTTGATATATATATTTTTTGAATTTTACGTCGTCTTAGATATGCGAGCCTTTGACGAATTGAGGATGCTGGAGATATTTTTTAAGGACGAAAGCAGGCATGGTGTAACGGTCGTCGATCTGTATGAACTTGTGCAACACGCCGGGAATATATTGCCCAGACTGTGAGTGAACATTGACTAGCGTCCTTAGGGCGTCACATTTAAGCTAATTAGTAATGCGTTATCATCTTCCTTGACCTGTTGATGGCTTCCTTGTTCTGGATAGCAATGTTTTTTTCTGCTATGTCCTATCTGCATCAGTGGATTTTTCATTATTGTTTTTCCTTTCTGCATCTAGGTATCTCCTTTGTACGGTTGGGTCAGTGTATATGAAATCTAAGGAGGTCCCTGCAAAGGAGGTCCTCAAGGATCTCGTGGAAATGTGCCGTGGAGTTCAACATCCAATACGTGGTCTCTTTCTCAGACACTATCTAGCTCAAGTCAGTAGGGACATATTGCTAGATATTAATTCTGAGGGCGAAGGGTAA

mRNA sequence

ATGTTATCGGTTGGAATTGAAGACGAAGAGAAATGGCTGGCCGAAGGAATCGCCGGAATTCAACACAATGCCTTCTACATGCATCAAGCCATGGATGCGAATAGTCTCAGAGAAGGACTTAAATACTCGGCTCAGATGCTTTCAGAACTTCGAACTTCGAAGCTTTCACCACACAGATATTACGAACTCTATATGCGAGCCTTTGACGAATTGAGGATGCTGGAGATATTTTTTAAGGACGAAAGCAGGCATGGTGTAACGGTCGTCGATCTGTATGAACTTGTGCAACACGCCGGGAATATATTGCCCAGACTGTATCTCCTTTGTACGGTTGGGTCAGTGTATATGAAATCTAAGGAGGTCCCTGCAAAGGAGGTCCTCAAGGATCTCGTGGAAATGTGCCGTGGAGTTCAACATCCAATACGTGGTCTCTTTCTCAGACACTATCTAGCTCAAGTCAGTAGGGACATATTGCTAGATATTAATTCTGAGGGCGAAGGGTAA

Coding sequence (CDS)

ATGTTATCGGTTGGAATTGAAGACGAAGAGAAATGGCTGGCCGAAGGAATCGCCGGAATTCAACACAATGCCTTCTACATGCATCAAGCCATGGATGCGAATAGTCTCAGAGAAGGACTTAAATACTCGGCTCAGATGCTTTCAGAACTTCGAACTTCGAAGCTTTCACCACACAGATATTACGAACTCTATATGCGAGCCTTTGACGAATTGAGGATGCTGGAGATATTTTTTAAGGACGAAAGCAGGCATGGTGTAACGGTCGTCGATCTGTATGAACTTGTGCAACACGCCGGGAATATATTGCCCAGACTGTATCTCCTTTGTACGGTTGGGTCAGTGTATATGAAATCTAAGGAGGTCCCTGCAAAGGAGGTCCTCAAGGATCTCGTGGAAATGTGCCGTGGAGTTCAACATCCAATACGTGGTCTCTTTCTCAGACACTATCTAGCTCAAGTCAGTAGGGACATATTGCTAGATATTAATTCTGAGGGCGAAGGGTAA

Protein sequence

MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG*

Homology

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BLAST of MELO3C003741 vs. Swiss-Prot
Match: VP35B_ARATH (Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 2.2e-74
Identity = 135/163 (82.82%), Postives = 150/163 (92.02%), Query Frame = 1


Query: 5   GIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELY 64
           G+EDE+KWLAEGIAGIQHNAF+MH+A+DAN+LRE LKYSA MLSELRTSKLSP +YY+LY
Sbjct: 6   GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65

Query: 65  MRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAK 124
           MRAFD+LR LEIFFKDESRHG+ VVDLYELVQHAGNILPR+YLLCTVGSVY+KSK+ P+K
Sbjct: 66  MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125

Query: 125 EVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           +VLKDLVEMCRGVQHPIRGLFLR YLAQVSRD L +I S+ EG
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEG 168

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BLAST of MELO3C003741 vs. Swiss-Prot
Match: VP35A_ARATH (Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.8e-69
Identity = 125/167 (74.85%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M++ G EDEEKWLA G A  + NAFYM +A+D+N+L++ LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFF +E+R G +V++LYELVQHAGNILPRLYLLCT GSVY+K+KE
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKE+LKDLVEMCRG+QHP+RGLFLR YLAQ+SRD L DI SE EG
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEG 167

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BLAST of MELO3C003741 vs. Swiss-Prot
Match: VP35C_ARATH (Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana GN=VPS35C PE=2 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 4.3e-62
Identity = 113/161 (70.19%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 7   EDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELYMR 66
           +D+EKWLA  IA ++ NAFYM +A+D+N+L++ LK+SAQMLSELRTSKLSPH+YYELYMR
Sbjct: 4   DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63

Query: 67  AFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEV 126
            F+EL  LEIFFK+E+  G ++ +LYELVQHAGNILPRLYLLCT+GSVY+KSK+V A ++
Sbjct: 64  VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123

Query: 127 LKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           LKDLVEMCR VQHP+RGLFLR YLAQV+RD L  I S+ EG
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEG 164

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BLAST of MELO3C003741 vs. Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-44
Identity = 92/160 (57.50%), Postives = 114/160 (71.25%), Query Frame = 1


Query: 7   EDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELYMR 66
           +++EK L E I  ++  +F M + +D N L + LK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 67  AFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEV 126
             DEL  LE++  DE   G  V DLYELVQ+AGNI+PRLYLL TVG VY+KS     K++
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129

Query: 127 LKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGE 167
           LKDLVEMCRGVQHP+RGLFLR+YL Q +R+IL D   EGE
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPD---EGE 166

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BLAST of MELO3C003741 vs. Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.3e-44
Identity = 92/160 (57.50%), Postives = 114/160 (71.25%), Query Frame = 1


Query: 7   EDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELYMR 66
           +++EK L E I  ++  +F M + +D N L + LK+++ ML ELRTS LSP  YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 67  AFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEV 126
             DEL  LE++  DE   G  V DLYELVQ+AGNI+PRLYLL TVG VY+KS     K++
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDI 129

Query: 127 LKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGE 167
           LKDLVEMCRGVQHP+RGLFLR+YL Q +R+IL D   EGE
Sbjct: 130 LKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPD---EGE 166

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BLAST of MELO3C003741 vs. TrEMBL
Match: A0A0A0LE86_CUCSA (Vacuolar protein sorting-associated protein 35 OS=Cucumis sativus GN=Csa_3G873280 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 2.9e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY
Sbjct: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE
Sbjct: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG
Sbjct: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 167

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BLAST of MELO3C003741 vs. TrEMBL
Match: A0A061FED4_THECC (Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

[Close]

BLAST of MELO3C003741 vs. TrEMBL
Match: A0A061FCL8_THECC (Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

[Close]

BLAST of MELO3C003741 vs. TrEMBL
Match: A0A061FDF5_THECC (Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

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BLAST of MELO3C003741 vs. TrEMBL
Match: A0A067HB56_CITSI (Vacuolar protein sorting-associated protein 35 OS=Citrus sinensis GN=CISIN_1g036120mg PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 2.1e-76
Identity = 143/166 (86.14%), Postives = 155/166 (93.37%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAG+QHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           YELYMRAFDELR LE+FFKDESRHGV+++DLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGE 167
            PAKEVLKDLVEMCRGVQHPIRGLFLR YLAQVSRD L DI SE E
Sbjct: 121 APAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYE 166

[Close]

BLAST of MELO3C003741 vs. TAIR10
Match: AT1G75850.1 (AT1G75850.1 VPS35 homolog B)

HSP 1 Score: 279.6 bits (714), Expect = 1.2e-75
Identity = 135/163 (82.82%), Postives = 150/163 (92.02%), Query Frame = 1


Query: 5   GIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELY 64
           G+EDE+KWLAEGIAGIQHNAF+MH+A+DAN+LRE LKYSA MLSELRTSKLSP +YY+LY
Sbjct: 6   GVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYDLY 65

Query: 65  MRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAK 124
           MRAFD+LR LEIFFKDESRHG+ VVDLYELVQHAGNILPR+YLLCTVGSVY+KSK+ P+K
Sbjct: 66  MRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAPSK 125

Query: 125 EVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           +VLKDLVEMCRGVQHPIRGLFLR YLAQVSRD L +I S+ EG
Sbjct: 126 DVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEG 168

[Close]

BLAST of MELO3C003741 vs. TAIR10
Match: AT2G17790.1 (AT2G17790.1 VPS35 homolog A)

HSP 1 Score: 262.7 bits (670), Expect = 1.6e-70
Identity = 125/167 (74.85%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M++ G EDEEKWLA G A  + NAFYM +A+D+N+L++ LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MIADGSEDEEKWLAAGAAAFKQNAFYMQRAIDSNNLKDALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFF +E+R G +V++LYELVQHAGNILPRLYLLCT GSVY+K+KE
Sbjct: 61  YDLYMRAFDELRKLEIFFMEETRRGCSVIELYELVQHAGNILPRLYLLCTAGSVYIKTKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKE+LKDLVEMCRG+QHP+RGLFLR YLAQ+SRD L DI SE EG
Sbjct: 121 APAKEILKDLVEMCRGIQHPLRGLFLRSYLAQISRDKLPDIGSEYEG 167

[Close]

BLAST of MELO3C003741 vs. TAIR10
Match: AT3G51310.1 (AT3G51310.1 VPS35 homolog C)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-63
Identity = 113/161 (70.19%), Postives = 137/161 (85.09%), Query Frame = 1


Query: 7   EDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRYYELYMR 66
           +D+EKWLA  IA ++ NAFYM +A+D+N+L++ LK+SAQMLSELRTSKLSPH+YYELYMR
Sbjct: 4   DDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYMR 63

Query: 67  AFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKEVPAKEV 126
            F+EL  LEIFFK+E+  G ++ +LYELVQHAGNILPRLYLLCT+GSVY+KSK+V A ++
Sbjct: 64  VFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKSKDVTATDI 123

Query: 127 LKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           LKDLVEMCR VQHP+RGLFLR YLAQV+RD L  I S+ EG
Sbjct: 124 LKDLVEMCRAVQHPLRGLFLRSYLAQVTRDKLPSIGSDLEG 164

[Close]

BLAST of MELO3C003741 vs. NCBI nr
Match: gi|778686819|ref|XP_011652456.1| (PREDICTED: vacuolar protein sorting-associated protein 35B [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 4.1e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY
Sbjct: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE
Sbjct: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG
Sbjct: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 167

[Close]

BLAST of MELO3C003741 vs. NCBI nr
Match: gi|659132943|ref|XP_008466470.1| (PREDICTED: vacuolar protein sorting-associated protein 35B isoform X1 [Cucumis melo])

HSP 1 Score: 335.9 bits (860), Expect = 4.1e-89
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY
Sbjct: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE
Sbjct: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
           VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG
Sbjct: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 167

[Close]

BLAST of MELO3C003741 vs. NCBI nr
Match: gi|590594454|ref|XP_007017855.1| (VPS35 B isoform 1 [Theobroma cacao])

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

[Close]

BLAST of MELO3C003741 vs. NCBI nr
Match: gi|590594457|ref|XP_007017856.1| (VPS35 B isoform 2 [Theobroma cacao])

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

[Close]

BLAST of MELO3C003741 vs. NCBI nr
Match: gi|590594460|ref|XP_007017857.1| (VPS35 B isoform 3 [Theobroma cacao])

HSP 1 Score: 293.5 bits (750), Expect = 2.3e-76
Identity = 144/167 (86.23%), Postives = 155/167 (92.81%), Query Frame = 1


Query: 1   MLSVGIEDEEKWLAEGIAGIQHNAFYMHQAMDANSLREGLKYSAQMLSELRTSKLSPHRY 60
           M+  G EDEEKWLAEGIAGIQHNAFYMH+A+D+N+LRE LKYSAQMLSELRTSKLSPH+Y
Sbjct: 1   MMLNGAEDEEKWLAEGIAGIQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKY 60

Query: 61  YELYMRAFDELRMLEIFFKDESRHGVTVVDLYELVQHAGNILPRLYLLCTVGSVYMKSKE 120
           Y+LYMRAFDELR LEIFFKDE +HGV+VVDLYELVQHAGNILPRLYLLCTVGSVY+KSKE
Sbjct: 61  YDLYMRAFDELRKLEIFFKDEGKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE 120

Query: 121 VPAKEVLKDLVEMCRGVQHPIRGLFLRHYLAQVSRDILLDINSEGEG 168
            PAKEVLKDLVEMCRGVQHP+RGLFLR YLAQVSRD L DI SE EG
Sbjct: 121 APAKEVLKDLVEMCRGVQHPLRGLFLRSYLAQVSRDKLPDIGSEYEG 167

The following BLAST results are available for this feature:

BLAST of MELO3C003741 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VP35B_ARATH	2.2e-74	82.82	Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35...	[more]
VP35A_ARATH	2.8e-69	74.85	Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35...	[more]
VP35C_ARATH	4.3e-62	70.19	Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana GN=VPS35...	[more]
VPS35_BOVIN	5.3e-44	57.50	Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1	[more]
VPS35_HUMAN	5.3e-44	57.50	Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=...	[more]

BLAST of MELO3C003741 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE86_CUCSA	2.9e-89	100.00	Vacuolar protein sorting-associated protein 35 OS=Cucumis sativus GN=Csa_3G87328...	[more]
A0A061FED4_THECC	1.6e-76	86.23	Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 ...	[more]
A0A061FCL8_THECC	1.6e-76	86.23	Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 ...	[more]
A0A061FDF5_THECC	1.6e-76	86.23	Vacuolar protein sorting-associated protein 35 OS=Theobroma cacao GN=TCM_034260 ...	[more]
A0A067HB56_CITSI	2.1e-76	86.14	Vacuolar protein sorting-associated protein 35 OS=Citrus sinensis GN=CISIN_1g036...	[more]

BLAST of MELO3C003741 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G75850.1	1.2e-75	82.82	VPS35 homolog B	[more]
AT2G17790.1	1.6e-70	74.85	VPS35 homolog A	[more]
AT3G51310.1	2.4e-63	70.19	VPS35 homolog C	[more]

BLAST of MELO3C003741 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778686819\|ref\|XP_011652456.1\|	4.1e-89	100.00	PREDICTED: vacuolar protein sorting-associated protein 35B [Cucumis sativus]	[more]
gi\|659132943\|ref\|XP_008466470.1\|	4.1e-89	100.00	PREDICTED: vacuolar protein sorting-associated protein 35B isoform X1 [Cucumis m...	[more]
gi\|590594454\|ref\|XP_007017855.1\|	2.3e-76	86.23	VPS35 B isoform 1 [Theobroma cacao]	[more]
gi\|590594457\|ref\|XP_007017856.1\|	2.3e-76	86.23	VPS35 B isoform 2 [Theobroma cacao]	[more]
gi\|590594460\|ref\|XP_007017857.1\|	2.3e-76	86.23	VPS35 B isoform 3 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005378	Vps35

Vocabulary: **Biological Process**
Term	Definition
GO:0042147	retrograde transport, endosome to Golgi
GO:0015031	protein transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0030904	retromer complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0042147	retrograde transport, endosome to Golgi
cellular_component	GO:0005622	intracellular
cellular_component	GO:0030904	retromer complex
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003741T1	MELO3C003741T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005378	Vacuolar protein sorting-associated protein 35	PANTHER	PTHR11099	VACUOLAR SORTING PROTEIN 35	coord: 1..167 score: 4.1E
IPR005378	Vacuolar protein sorting-associated protein 35	PFAM	PF03635	Vps35	coord: 12..165 score: 1.3
None	No IPR available	PANTHER	PTHR11099:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A-RELATED	coord: 1..167 score: 4.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003741	Cucsa.343140	Cucumber (Gy14) v1	cgymeB559

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003741	Cucurbita maxima (Rimu)	cmameB032
MELO3C003741	Cucurbita maxima (Rimu)	cmameB424
MELO3C003741	Cucurbita moschata (Rifu)	cmomeB021
MELO3C003741	Cucurbita moschata (Rifu)	cmomeB414
MELO3C003741	Wild cucumber (PI 183967)	cpimeB215
MELO3C003741	Cucumber (Chinese Long) v2	cumeB222
MELO3C003741	Cucumber (Chinese Long) v2	cumeB485
MELO3C003741	Watermelon (Charleston Gray)	mewcgB332
MELO3C003741	Watermelon (97103) v1	mewmB369
MELO3C003741	Cucurbita pepo (Zucchini)	cpemeB516
MELO3C003741	Cucurbita pepo (Zucchini)	cpemeB726
MELO3C003741	Bottle gourd (USVL1VR-Ls)	lsimeB142
MELO3C003741	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C003741	Cucumber (Gy14) v2	cgybmeB185
MELO3C003741	Silver-seed gourd	carmeB0106
MELO3C003741	Silver-seed gourd	carmeB0928
MELO3C003741	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003741	Watermelon (97103) v2	mewmbB333
MELO3C003741	Wax gourd	mewgoB431
MELO3C003741	Melon (DHL92) v3.5.1	memeB145