MELO3C003720 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003720
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Flagellar hook-basal body complex protein FliE
Location	chr4 : 3563013 .. 3563839 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCATTGTGCGTGCCTTCTACCCAAAATTTTCTTTCAATTTCTTGTGTCGTCTGTTGTGCGTTGTTGCTTGTCGATTCATCTCGCCGAACGTCTTGCCGAACCTCACCTCGTTTAGTGGTTGTGGCCAAACGCTTTCGTCTTTGGCTGAATTGAGTTCACCGTCCACTGGGATTATTAGTTTGCATTTGCGAAGCCACCATACGTTTCTCAATTCTCCACTTGGAAAATTGGCTGGAAATCAATTCTCGATTCTCCACAAGAGAGGAATTTCATTCTAATACCTCGGTTTCGATAGCGACAGAGGAGGTGGCGACGACGAATGTCTCTGTTCTTTCTTTTTCTTCCTCACCACCACCAGTGAACGACGAAAAGCAAAGTCTTCAACTACACCCAGTGAGATTCTTTTTGTATTTATCATTTTGCATGTAGAAATTTTCAAACACAAGGGTTGGAAACTTTAAGACGAATCAAGATTGATTACTGTTTTTTGTGTTTCGAGATCGAGCTGGTGTTAATGTAGCTAATATGGATGTGTGATGATAATGATAGGAACAAAACATGACAAGAGTCAACGAAGATTTGGGAGAAACAGGGACTGCCATTAATGAAGTGATCAAAAACGTTTCTAATGATAGTAGTTATGAATTAGCGGTGAAAGTGAGAGCAAGAAGACAGAGAGAATATACAGAATTGGAGAGGATTGAAGTAGGGCTAAGAAGAGCAAGAGCCGCCATTAGAGAAGCTAAGTTCCTTAATCAAACACAAGATCCTGACTTCGTTCCTTCTAGTCCAATGTATTGGAATTCTAAGCATTTCACAGGTTAA

mRNA sequence

ACCCATTGTGCGTGCCTTCTACCCAAAATTTTCTTTCAATTTCTTGTGTCGTCTGTTGTGCGTTGTTGCTTGTCGATTCATCTCGCCGAACGTCTTGCCGAACCTCACCTCGTTTAGTGGTTGTGGCCAAACGCTTTCGTCTTTGGCTGAATTGAGTTCACCGTCCACTGGGATTATTAGTTTGCATTTGCGAAGCCACCATACGTTTCTCAATTCTCCACTTGGAAAATTGGCTGGAAATCAATTCTCGATTCTCCACAAGAGAGGAATTTCATTCTAATACCTCGGTTTCGATAGCGACAGAGGAGGTGGCGACGACGAATGTCTCTGTTCTTTCTTTTTCTTCCTCACCACCACCAGTGAACGACGAAAAGCAAAGTCTTCAACTACACCCAGAACAAAACATGACAAGAGTCAACGAAGATTTGGGAGAAACAGGGACTGCCATTAATGAAGTGATCAAAAACGTTTCTAATGATAGTAGTTATGAATTAGCGGTGAAAGTGAGAGCAAGAAGACAGAGAGAATATACAGAATTGGAGAGGATTGAAGTAGGGCTAAGAAGAGCAAGAGCCGCCATTAGAGAAGCTAAGTTCCTTAATCAAACACAAGATCCTGACTTCGTTCCTTCTAGTCCAATGTATTGGAATTCTAAGCATTTCACAGGTTAA

Coding sequence (CDS)

ATGACAAGAGTCAACGAAGATTTGGGAGAAACAGGGACTGCCATTAATGAAGTGATCAAAAACGTTTCTAATGATAGTAGTTATGAATTAGCGGTGAAAGTGAGAGCAAGAAGACAGAGAGAATATACAGAATTGGAGAGGATTGAAGTAGGGCTAAGAAGAGCAAGAGCCGCCATTAGAGAAGCTAAGTTCCTTAATCAAACACAAGATCCTGACTTCGTTCCTTCTAGTCCAATGTATTGGAATTCTAAGCATTTCACAGGTTAA

Protein sequence

MTRVNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMYWNSKHFTG*

Homology

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BLAST of MELO3C003720 vs. Swiss-Prot
Match: GLYT3_ARATH (Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 3.6e-07
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 21  NVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMY 80
           NVS+ +S E       +++R  + LE+IE  L++ARA+I+ A   +   DPD+VP  PMY
Sbjct: 120 NVSSTASLE------PKKRRVLSNLEKIEFKLQKARASIKAASMDDPVDDPDYVPLGPMY 179

Query: 81  WNSKHF 87
           WN+K F
Sbjct: 180 WNAKVF 179

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BLAST of MELO3C003720 vs. TrEMBL
Match: A0A0A0KKC9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449280 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.1e-34
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 2   TRVNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIRE 61
           TRVNEDLGET T INEVI+ VSN+SSYE AVKVRARRQREYT+LERIE GLRRARAAIRE
Sbjct: 95  TRVNEDLGETATTINEVIRKVSNESSYESAVKVRARRQREYTKLERIEAGLRRARAAIRE 154

Query: 62  AKFLNQTQDPDFVPSSPMYWNSKHF 87
           AKFLNQTQDPDFVPS PMYWNSK F
Sbjct: 155 AKFLNQTQDPDFVPSGPMYWNSKAF 179

[Close]

BLAST of MELO3C003720 vs. TrEMBL
Match: V4S7X8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011407mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-12
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 4   VNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAK 63
           +N  +  T   +   +   +N++    AV ++A R+R  T+LE++E GL+RAR AI+EA 
Sbjct: 128 LNISMSTTNKTLGVAVAAATNETH---AVPMKAERKRAVTKLEKLEAGLQRARVAIKEAS 187

Query: 64  FLNQTQDPDFVPSSPMYWNSKHF 87
             NQTQDPDFVP  PMYW+SK F
Sbjct: 188 IGNQTQDPDFVPLGPMYWDSKAF 207

[Close]

BLAST of MELO3C003720 vs. TrEMBL
Match: A0A067F4D6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048582mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-12
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 4   VNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAK 63
           +N  +  T   +   +   +N++    AV ++A R+R  T+LE++E GL+RAR AI+EA 
Sbjct: 131 LNISMSTTNKTLGVAVAAATNETH---AVPMKAERKRAVTKLEKLEAGLQRARVAIKEAS 190

Query: 64  FLNQTQDPDFVPSSPMYWNSKHF 87
             NQTQDPDFVP  PMYW+SK F
Sbjct: 191 IGNQTQDPDFVPLGPMYWDSKAF 210

[Close]

BLAST of MELO3C003720 vs. TrEMBL
Match: A5ADS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016428 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 31  AVKVRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMYWNSKHF 87
           A+ V +R QR+YT LER+E GLRRAR+AIREAK  N+T DPD++P+ P+YWN   F
Sbjct: 148 ALPVTSRPQRQYTTLERVEAGLRRARSAIREAKIGNRTPDPDYIPNGPIYWNXNAF 203

[Close]

BLAST of MELO3C003720 vs. TrEMBL
Match: W9RJ02_9ROSA (Putative glycosyltransferase OS=Morus notabilis GN=L484_022635 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 34/53 (64.15%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 34  VRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMYWNSKHF 87
           V+ARR REY++LER+E  L +AR+AI EAK  N+TQDP++VP+ PMYWNSK F
Sbjct: 73  VKARRHREYSDLERLEARLMKARSAISEAKVGNETQDPEYVPTGPMYWNSKAF 125

[Close]

BLAST of MELO3C003720 vs. TAIR10
Match: AT5G03795.1 (AT5G03795.1 Exostosin family protein)

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-08
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1


Query: 21  NVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMY 80
           NVS+ +S E       +++R  + LE+IE  L++ARA+I+ A   +   DPD+VP  PMY
Sbjct: 120 NVSSTASLE------PKKRRVLSNLEKIEFKLQKARASIKAASMDDPVDDPDYVPLGPMY 179

Query: 81  WNSKHF 87
           WN+K F
Sbjct: 180 WNAKVF 179

[Close]

BLAST of MELO3C003720 vs. NCBI nr
Match: gi|659125122|ref|XP_008462519.1| (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 9.0e-35
Identity = 77/85 (90.59%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 2   TRVNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIRE 61
           TRVNEDLGET TAIN VI+NVSNDSSYE AVKVRARRQREYT+LERIE GLRRARAAIRE
Sbjct: 96  TRVNEDLGETATAINGVIRNVSNDSSYESAVKVRARRQREYTKLERIEAGLRRARAAIRE 155

Query: 62  AKFLNQTQDPDFVPSSPMYWNSKHF 87
           AKFLNQTQDPDFVPS PMYWNSK F
Sbjct: 156 AKFLNQTQDPDFVPSGPMYWNSKAF 180

[Close]

BLAST of MELO3C003720 vs. NCBI nr
Match: gi|449451243|ref|XP_004143371.1| (PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 5.8e-34
Identity = 75/85 (88.24%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 2   TRVNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIRE 61
           TRVNEDLGET T INEVI+ VSN+SSYE AVKVRARRQREYT+LERIE GLRRARAAIRE
Sbjct: 95  TRVNEDLGETATTINEVIRKVSNESSYESAVKVRARRQREYTKLERIEAGLRRARAAIRE 154

Query: 62  AKFLNQTQDPDFVPSSPMYWNSKHF 87
           AKFLNQTQDPDFVPS PMYWNSK F
Sbjct: 155 AKFLNQTQDPDFVPSGPMYWNSKAF 179

[Close]

BLAST of MELO3C003720 vs. NCBI nr
Match: gi|641842082|gb|KDO60990.1| (hypothetical protein CISIN_1g048582mg [Citrus sinensis])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 4   VNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAK 63
           +N  +  T   +   +   +N++    AV ++A R+R  T+LE++E GL+RAR AI+EA 
Sbjct: 131 LNISMSTTNKTLGVAVAAATNETH---AVPMKAERKRAVTKLEKLEAGLQRARVAIKEAS 190

Query: 64  FLNQTQDPDFVPSSPMYWNSKHF 87
             NQTQDPDFVP  PMYW+SK F
Sbjct: 191 IGNQTQDPDFVPLGPMYWDSKAF 210

[Close]

BLAST of MELO3C003720 vs. NCBI nr
Match: gi|567875517|ref|XP_006430348.1| (hypothetical protein CICLE_v10011407mg [Citrus clementina])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1


Query: 4   VNEDLGETGTAINEVIKNVSNDSSYELAVKVRARRQREYTELERIEVGLRRARAAIREAK 63
           +N  +  T   +   +   +N++    AV ++A R+R  T+LE++E GL+RAR AI+EA 
Sbjct: 128 LNISMSTTNKTLGVAVAAATNETH---AVPMKAERKRAVTKLEKLEAGLQRARVAIKEAS 187

Query: 64  FLNQTQDPDFVPSSPMYWNSKHF 87
             NQTQDPDFVP  PMYW+SK F
Sbjct: 188 IGNQTQDPDFVPLGPMYWDSKAF 207

[Close]

BLAST of MELO3C003720 vs. NCBI nr
Match: gi|147843475|emb|CAN82060.1| (hypothetical protein VITISV_016428 [Vitis vinifera])

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-11
Identity = 34/56 (60.71%), Postives = 44/56 (78.57%), Query Frame = 1


Query: 31  AVKVRARRQREYTELERIEVGLRRARAAIREAKFLNQTQDPDFVPSSPMYWNSKHF 87
           A+ V +R QR+YT LER+E GLRRAR+AIREAK  N+T DPD++P+ P+YWN   F
Sbjct: 148 ALPVTSRPQRQYTTLERVEAGLRRARSAIREAKIGNRTPDPDYIPNGPIYWNXNAF 203

The following BLAST results are available for this feature:

BLAST of MELO3C003720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GLYT3_ARATH	3.6e-07	42.42	Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3...	[more]

BLAST of MELO3C003720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKC9_CUCSA	4.1e-34	88.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G449280 PE=4 SV=1	[more]
V4S7X8_9ROSI	7.4e-12	45.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011407mg PE=4 SV=1	[more]
A0A067F4D6_CITSI	7.4e-12	45.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048582mg PE=4 SV=1	[more]
A5ADS4_VITVI	1.3e-11	60.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016428 PE=4 SV=1	[more]
W9RJ02_9ROSA	1.7e-11	64.15	Putative glycosyltransferase OS=Morus notabilis GN=L484_022635 PE=4 SV=1	[more]

BLAST of MELO3C003720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03795.1	2.0e-08	42.42	Exostosin family protein	[more]

BLAST of MELO3C003720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659125122\|ref\|XP_008462519.1\|	9.0e-35	90.59	PREDICTED: probable glycosyltransferase At5g03795 [Cucumis melo]	[more]
gi\|449451243\|ref\|XP_004143371.1\|	5.8e-34	88.24	PREDICTED: probable glycosyltransferase At5g03795 [Cucumis sativus]	[more]
gi\|641842082\|gb\|KDO60990.1\|	1.1e-11	45.78	hypothetical protein CISIN_1g048582mg [Citrus sinensis]	[more]
gi\|567875517\|ref\|XP_006430348.1\|	1.1e-11	45.78	hypothetical protein CICLE_v10011407mg [Citrus clementina]	[more]
gi\|147843475\|emb\|CAN82060.1\|	1.8e-11	60.71	hypothetical protein VITISV_016428 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003720T1	MELO3C003720T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003720	Wild cucumber (PI 183967)	cpimeB215
MELO3C003720	Cucumber (Chinese Long) v2	cumeB222
MELO3C003720	Watermelon (Charleston Gray)	mewcgB332
MELO3C003720	Watermelon (Charleston Gray)	mewcgB337
MELO3C003720	Watermelon (97103) v1	mewmB369
MELO3C003720	Watermelon (97103) v1	mewmB372
MELO3C003720	Cucurbita pepo (Zucchini)	cpemeB728
MELO3C003720	Bottle gourd (USVL1VR-Ls)	lsimeB310
MELO3C003720	Bottle gourd (USVL1VR-Ls)	lsimeB311
MELO3C003720	Cucumber (Gy14) v2	cgybmeB185
MELO3C003720	Silver-seed gourd	carmeB0631
MELO3C003720	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003720	Watermelon (97103) v2	mewmbB333
MELO3C003720	Watermelon (97103) v2	mewmbB338
MELO3C003720	Wax gourd	mewgoB435
MELO3C003720	Cucumber (Gy14) v1	cgymeB517
MELO3C003720	Cucurbita maxima (Rimu)	cmameB032
MELO3C003720	Cucurbita maxima (Rimu)	cmameB034
MELO3C003720	Cucurbita moschata (Rifu)	cmomeB021
MELO3C003720	Cucurbita moschata (Rifu)	cmomeB023