MELO3C003461 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003461
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	WD40 repeat-like protein
Location	chr4 : 1416039 .. 1416479 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGATTCCTCCCAGGCCACTGGTTTGGGGTTTCTGTGTCTGGCGGTGGTGGAGAGCCTGCTGCTCAGTGGCTCTGAGGACACCACCATCAGGATTTGGAGGAGGGAGGAAGCAGGTTGGTCCCATGAATGCTTGGCAGTGTTGGATAGCCATAGAGGGCCTGTCAGATGCTTGGCAGGGACCTTGGAAACCATGGAAAACAGAGTAATGAACAAGATGGAGACCAGTGTTTTGGTTTATAGTGGGAGTTTGGATCAGACGTTTAAGGTTTGGGGAGTGAAGGTTTTTTTGAACCATAATAATCAAGACAAAAAGGTATTAATGGAGTATCAGGAGGAGGAGGGGGAGGAGGACTTGAAGATGAAGAAGCTTTATGAAACGAGCCCTGTCTTGTCTCCTTCTTGGGTTCAGAAAAAGCTTCAACCTAATTATTTCTGA

mRNA sequence

ATGGGGGATTCCTCCCAGGCCACTGGTTTGGGGTTTCTGTGTCTGGCGGTGGTGGAGAGCCTGCTGCTCAGTGGCTCTGAGGACACCACCATCAGGATTTGGAGGAGGGAGGAAGCAGGTTGGTCCCATGAATGCTTGGCAGTGTTGGATAGCCATAGAGGGCCTGTCAGATGCTTGGCAGGGACCTTGGAAACCATGGAAAACAGAGTAATGAACAAGATGGAGACCAGTGTTTTGGTTTATAGTGGGAGTTTGGATCAGACGTTTAAGGTTTGGGGAGTGAAGGTTTTTTTGAACCATAATAATCAAGACAAAAAGGTATTAATGGAGTATCAGGAGGAGGAGGGGGAGGAGGACTTGAAGATGAAGAAGCTTTATGAAACGAGCCCTGTCTTGTCTCCTTCTTGGGTTCAGAAAAAGCTTCAACCTAATTATTTCTGA

Coding sequence (CDS)

ATGGGGGATTCCTCCCAGGCCACTGGTTTGGGGTTTCTGTGTCTGGCGGTGGTGGAGAGCCTGCTGCTCAGTGGCTCTGAGGACACCACCATCAGGATTTGGAGGAGGGAGGAAGCAGGTTGGTCCCATGAATGCTTGGCAGTGTTGGATAGCCATAGAGGGCCTGTCAGATGCTTGGCAGGGACCTTGGAAACCATGGAAAACAGAGTAATGAACAAGATGGAGACCAGTGTTTTGGTTTATAGTGGGAGTTTGGATCAGACGTTTAAGGTTTGGGGAGTGAAGGTTTTTTTGAACCATAATAATCAAGACAAAAAGGTATTAATGGAGTATCAGGAGGAGGAGGGGGAGGAGGACTTGAAGATGAAGAAGCTTTATGAAACGAGCCCTGTCTTGTCTCCTTCTTGGGTTCAGAAAAAGCTTCAACCTAATTATTTCTGA

Protein sequence

MGDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLKMKKLYETSPVLSPSWVQKKLQPNYF*

Homology

[Close]

BLAST of MELO3C003461 vs. Swiss-Prot
Match: LIS1_SCHMA (Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.5e-06
Identity = 34/90 (37.78%), Postives = 43/90 (47.78%), Query Frame = 1


Query: 20  SLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETME-NRVMNKMETSV 79
           +LL S S D TIRIW  E    S EC  VL  H   V C+A        N + + M +S+
Sbjct: 261 NLLASCSNDHTIRIWSVE----SRECQVVLRGHEHVVECIAWASHPQNLNSLPSSMNSSL 320

Query: 80  LVYSGSLDQTFKVWGVK------VFLNHNN 103
           L+ SGS D+T + W V       V + H+N
Sbjct: 321 LLVSGSRDRTIRFWDVNIGICLFVLIGHDN 346

[Close]

BLAST of MELO3C003461 vs. TrEMBL
Match: A0A061GIQ1_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037181 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.8e-32
Identity = 78/145 (53.79%), Postives = 92/145 (63.45%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCL  +E L+ SGSEDTTIR+WRREE    HECLAVLD HRGPVRCLA 
Sbjct: 320 GGFLQGHRFAVLCLTAIEKLIFSGSEDTTIRVWRREEGSCFHECLAVLDGHRGPVRCLAA 379

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
           +LE      M K+    LVYS SLDQTFKVW VKV       ++KV  ++ +    +  K
Sbjct: 380 SLE------MEKIVMGFLVYSASLDQTFKVWRVKVM-----PEEKVCFDFADRNDSKSTK 439

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
             + YE SPVLSPSWV+KKLQ N+F
Sbjct: 440 TME-YEMSPVLSPSWVEKKLQGNHF 452

[Close]

BLAST of MELO3C003461 vs. TrEMBL
Match: A0A061GIQ1_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037181 PE=4 SV=1)

HSP 1 Score: 37.0 bits (84), Expect = 2.4e+01
Identity = 23/71 (32.39%), Postives = 28/71 (39.44%), Query Frame = 1


Query: 22  LLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMETSVLVY 81
           L SGS D TI  W +E+          L  HR  V CL                   L++
Sbjct: 296 LYSGSSDGTINFWEKEKMSGRFNHGGFLQGHRFAVLCLTA--------------IEKLIF 352

Query: 82  SGSLDQTFKVW 93
           SGS D T +VW
Sbjct: 356 SGSEDTTIRVW 352

HSP 2 Score: 145.2 bits (365), Expect = 6.3e-32
Identity = 78/145 (53.79%), Postives = 94/145 (64.83%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCLA V +++ SGSEDTTIR+WRREE    HECL VLD HRGPVRCLA 
Sbjct: 316 GGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAA 375

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
            LE      M K+    LVYS SLDQTFKVW +KV       D+K+ M+Y E+   + +K
Sbjct: 376 CLE------MEKVVMGFLVYSASLDQTFKVWRIKVL-----PDEKMCMDYSEQCEAQRVK 435

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
           ++  Y  SPVLSPSWV+KKLQ +YF
Sbjct: 436 IRD-YSMSPVLSPSWVEKKLQGSYF 448

[Close]

BLAST of MELO3C003461 vs. TrEMBL
Match: B9H901_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25610g PE=4 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-32
Identity = 79/145 (54.48%), Postives = 92/145 (63.45%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCL  +E LL SGSEDTTIR+WRREE  + HECLAVLD HRGPVRCLA 
Sbjct: 347 GGFLQGHRFAVLCLVAIEKLLFSGSEDTTIRVWRREEGSYFHECLAVLDGHRGPVRCLAA 406

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
            LE      M K+    LVYS SLDQTFKVW VKV       ++K  ++Y+E        
Sbjct: 407 CLE------MEKVVMGFLVYSASLDQTFKVWRVKVL-----PEEKRYLDYREVSDSRSKV 466

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
           M+  YE SPVLSPSWV+KKL+ +YF
Sbjct: 467 ME--YEMSPVLSPSWVKKKLKGDYF 478

[Close]

BLAST of MELO3C003461 vs. TrEMBL
Match: A0A0L9TE01_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan561s002100 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-32
Identity = 78/145 (53.79%), Postives = 94/145 (64.83%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCLA V +++ SGSEDTTIR+WRREE    HECL VLD HRGPVRCLA 
Sbjct: 316 GGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAA 375

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
            LE      M K+    LVYS SLDQTFKVW +KV       D+K+ M+Y E+     +K
Sbjct: 376 CLE------MEKVVMGFLVYSASLDQTFKVWRIKVL-----PDEKMCMDYSEQCEAPRVK 435

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
           ++  Y+ SPVLSPSWV+KKLQ +YF
Sbjct: 436 IRD-YDMSPVLSPSWVEKKLQGSYF 448

[Close]

BLAST of MELO3C003461 vs. TrEMBL
Match: A0A0S3RCX2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G100300 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-32
Identity = 78/145 (53.79%), Postives = 94/145 (64.83%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCLA V +++ SGSEDTTIR+WRREE    HECL VLD HRGPVRCLA 
Sbjct: 316 GGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAA 375

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
            LE      M K+    LVYS SLDQTFKVW +KV       D+K+ M+Y E+     +K
Sbjct: 376 CLE------MEKVVMGFLVYSASLDQTFKVWRIKVL-----PDEKMCMDYSEQCEAPRVK 435

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
           ++  Y+ SPVLSPSWV+KKLQ +YF
Sbjct: 436 IRD-YDMSPVLSPSWVEKKLQGSYF 448

[Close]

BLAST of MELO3C003461 vs. TAIR10
Match: AT2G26490.1 (AT2G26490.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.2e-15
Identity = 44/107 (41.12%), Postives = 62/107 (57.94%), Query Frame = 1


Query: 10  LGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENR 69
           L  LCL V  SL+ SGS D TI +W+R+  G  H CL+VL  H GPV+CLA      +  
Sbjct: 339 LAVLCLEVAGSLVFSGSADKTICVWKRD--GNIHTCLSVLTGHTGPVKCLA---VEADRE 398

Query: 70  VMNKMETSVLVYSGSLDQTFKVWGV-KVFLNHNNQDKKVLMEYQEEE 116
              + +   +VYSGSLD++ KVWGV + F++ N      +M+ Q+++
Sbjct: 399 ASERRDKKWIVYSGSLDKSVKVWGVSESFIDMNQMS---MMQQQQQQ 437

HSP 2 Score: 33.9 bits (76), Expect = 1.0e-01
Identity = 22/88 (25.00%), Postives = 35/88 (39.77%), Query Frame = 1


Query: 15  LAVVESLLLSGSEDTTIRIWRREEAG--WSHECLAVLDSHRGPVRCLAGTLETMENRVMN 74
           ++  E+++ SGS D T++ W+R++ G    H  +  L      V  LA +          
Sbjct: 255 VSTTEAIVFSGSADGTVKAWKRDQQGKYTKHTLMQTLTKQESAVTALAVS---------- 314

Query: 75  KMETSVLVYSGSLDQTFKVWGVKVFLNH 101
             +    VY GS D     W  +  LN+
Sbjct: 315 --KNGAAVYFGSSDGLVNFWEREKQLNY 330

[Close]

BLAST of MELO3C003461 vs. TAIR10
Match: AT3G50390.1 (AT3G50390.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 77.4 bits (189), Expect = 8.1e-15
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 1


Query: 10  LGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENR 69
           L  LCL    +L+ SGS D  IR+WRR E G  H CL+VL  H GPV+CLA  +E  +  
Sbjct: 344 LAVLCLVAAGNLMFSGSADLGIRVWRRPEGGGEHVCLSVLTGHAGPVKCLA--VERDQES 403

Query: 70  VMNKMETSVLVYSGSLDQTFKVWGV 95
           V    E   +VYSGSLD++ K+W V
Sbjct: 404 VSG--ERRWIVYSGSLDRSVKMWRV 424

HSP 2 Score: 29.6 bits (65), Expect = 1.9e+00
Identity = 13/20 (65.00%), Postives = 13/20 (65.00%), Query Frame = 1


Query: 75  ETSVLVYSGSLDQTFKVWGV 95
           E   L+YSGS D+TFKVW V
Sbjct: 221 EDKRLLYSGSWDKTFKVWRV 240

[Close]

BLAST of MELO3C003461 vs. TAIR10
Match: AT4G34380.1 (AT4G34380.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 74.3 bits (181), Expect = 6.9e-14
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1


Query: 13  LCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETM----EN 72
           LCL +  +LLLSGS D  I +WRR+ +  SH+CL+VL  H GPV+CLA   E        
Sbjct: 371 LCLGIAGNLLLSGSADKNICVWRRDPSDKSHQCLSVLTGHMGPVKCLAVEEERACHQGAK 430

Query: 73  RVMNKMETSVLVYSGSLDQTFKVWGV 95
             + + +   ++YSGSLD++ KVW V
Sbjct: 431 ASVAEGDRKWIIYSGSLDKSVKVWRV 456

[Close]

BLAST of MELO3C003461 vs. TAIR10
Match: AT3G18950.1 (AT3G18950.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.0e-14
Identity = 42/93 (45.16%), Postives = 51/93 (54.84%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G + +   L  LCLA   SL+LSG  D  I +WRR   G SH CL+VL  H GPV+CL  
Sbjct: 374 GGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDG-SHSCLSVLMDHVGPVKCLTA 433

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGV 95
             +  E     K +   +VYSGSLD++ KVW V
Sbjct: 434 VEDDGEGH-REKGDQKWIVYSGSLDKSVKVWRV 464

HSP 2 Score: 40.8 bits (94), Expect = 8.4e-04
Identity = 26/84 (30.95%), Postives = 37/84 (44.05%), Query Frame = 1


Query: 19  ESLLLSGSEDTTIRIWRRE--EAGWSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMET 78
           + LL +GS D T+++W+RE    G  H  + VL      V  LA  +            T
Sbjct: 302 DDLLFTGSADGTLKVWKRELQGKGTKHFLVNVLMKQENAVTALAVNI------------T 361

Query: 79  SVLVYSGSLDQTFKVWGVKVFLNH 101
           + +VY GS D T   W  + +L+H
Sbjct: 362 AAVVYCGSSDGTVNFWEGQKYLSH 373

[Close]

BLAST of MELO3C003461 vs. TAIR10
Match: AT1G49450.1 (AT1G49450.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-13
Identity = 42/90 (46.67%), Postives = 49/90 (54.44%), Query Frame = 1


Query: 10  LGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENR 69
           +  LCLA   SLLLSG  D  I +W+R   G SH CL+VL  H GPV+CLA   E  E+ 
Sbjct: 378 MAVLCLATAGSLLLSGGADKNICVWKRNGDG-SHTCLSVLMDHEGPVKCLAAVEEAEEDH 437

Query: 70  -----VMNKMETSVLVYSGSLDQTFKVWGV 95
                   K +   +VYSGSLD + KVW V
Sbjct: 438 NDGDDGGEKGDQRWIVYSGSLDNSVKVWRV 466

HSP 2 Score: 40.8 bits (94), Expect = 8.4e-04
Identity = 26/84 (30.95%), Postives = 35/84 (41.67%), Query Frame = 1


Query: 19  ESLLLSGSEDTTIRIWRREEAG--WSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMET 78
           + L+ +GS D T+++W+RE  G    H  + VL      V  LA  L            T
Sbjct: 298 DDLVFTGSADGTLKVWKREVQGKEMKHVLVQVLMKQENAVTALAVNL------------T 357

Query: 79  SVLVYSGSLDQTFKVWGVKVFLNH 101
             +VY GS D T   W  + +L H
Sbjct: 358 DAVVYCGSSDGTVNFWERQKYLTH 369

[Close]

BLAST of MELO3C003461 vs. NCBI nr
Match: gi|659133285|ref|XP_008466650.1| (PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 2.9e-78
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MGDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLA 60
           MGDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLA
Sbjct: 1   MGDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLA 60

Query: 61  GTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDL 120
           GTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDL
Sbjct: 61  GTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDL 120

Query: 121 KMKKLYETSPVLSPSWVQKKLQPNYF 147
           KMKKLYETSPVLSPSWVQKKLQPNYF
Sbjct: 121 KMKKLYETSPVLSPSWVQKKLQPNYF 146

[Close]

BLAST of MELO3C003461 vs. NCBI nr
Match: gi|778689054|ref|XP_004136407.2| (PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 8.4e-38
Identity = 85/99 (85.86%), Postives = 89/99 (89.90%), Query Frame = 1


Query: 48  VLDSHRGPVRCLAGTLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKV 107
           VLD HRGPVRCLAGTLETMENRVMNKME SVLVYSGSLDQTFKVW V VFLNHN+Q+K  
Sbjct: 617 VLDGHRGPVRCLAGTLETMENRVMNKMERSVLVYSGSLDQTFKVWRVMVFLNHNDQEKG- 676

Query: 108 LMEYQEEEGEEDLKMKKLYETSPVLSPSWVQKKLQPNYF 147
           LME +EE  EEDLKMKKLYETSPVLSPSWVQKKLQ NY+
Sbjct: 677 LMECEEE--EEDLKMKKLYETSPVLSPSWVQKKLQHNYY 712

[Close]

BLAST of MELO3C003461 vs. NCBI nr
Match: gi|590573402|ref|XP_007012111.1| (Transducin/WD40 repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-32
Identity = 78/145 (53.79%), Postives = 92/145 (63.45%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCL  +E L+ SGSEDTTIR+WRREE    HECLAVLD HRGPVRCLA 
Sbjct: 320 GGFLQGHRFAVLCLTAIEKLIFSGSEDTTIRVWRREEGSCFHECLAVLDGHRGPVRCLAA 379

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
           +LE      M K+    LVYS SLDQTFKVW VKV       ++KV  ++ +    +  K
Sbjct: 380 SLE------MEKIVMGFLVYSASLDQTFKVWRVKVM-----PEEKVCFDFADRNDSKSTK 439

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
             + YE SPVLSPSWV+KKLQ N+F
Sbjct: 440 TME-YEMSPVLSPSWVEKKLQGNHF 452

[Close]

BLAST of MELO3C003461 vs. NCBI nr
Match: gi|590573402|ref|XP_007012111.1| (Transducin/WD40 repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 37.0 bits (84), Expect = 3.5e+01
Identity = 23/71 (32.39%), Postives = 28/71 (39.44%), Query Frame = 1


Query: 22  LLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAGTLETMENRVMNKMETSVLVY 81
           L SGS D TI  W +E+          L  HR  V CL                   L++
Sbjct: 296 LYSGSSDGTINFWEKEKMSGRFNHGGFLQGHRFAVLCLTA--------------IEKLIF 352

Query: 82  SGSLDQTFKVW 93
           SGS D T +VW
Sbjct: 356 SGSEDTTIRVW 352

HSP 2 Score: 145.2 bits (365), Expect = 9.0e-32
Identity = 78/145 (53.79%), Postives = 94/145 (64.83%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCLA V +++ SGSEDTTIR+WRREE    HECL VLD HRGPVRCLA 
Sbjct: 316 GGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAA 375

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQEEEGEEDLK 121
            LE      M K+    LVYS SLDQTFKVW +KV       D+K+ M+Y E+   + +K
Sbjct: 376 CLE------MEKVVMGFLVYSASLDQTFKVWRIKVL-----PDEKMCMDYSEQCEAQRVK 435

Query: 122 MKKLYETSPVLSPSWVQKKLQPNYF 147
           ++  Y  SPVLSPSWV+KKLQ +YF
Sbjct: 436 IRD-YSMSPVLSPSWVEKKLQGSYF 448

[Close]

BLAST of MELO3C003461 vs. NCBI nr
Match: gi|1012259064|ref|XP_015945610.1| (PREDICTED: myosin heavy chain kinase B-like [Arachis duranensis])

HSP 1 Score: 145.2 bits (365), Expect = 9.0e-32
Identity = 79/148 (53.38%), Postives = 92/148 (62.16%), Query Frame = 1


Query: 2   GDSSQATGLGFLCLAVVESLLLSGSEDTTIRIWRREEAGWSHECLAVLDSHRGPVRCLAG 61
           G   Q      LCLA V +L+ SGSEDTTIR+WRREE    HECLAVLD HRGPVRCLA 
Sbjct: 346 GGFLQGHRFAVLCLATVGNLVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAA 405

Query: 62  TLETMENRVMNKMETSVLVYSGSLDQTFKVWGVKVFLNHNNQDKKVLMEYQ---EEEGEE 121
            L+      M K+    LVYS SLDQTFKVW +K+    N  D+K+ +EY       G E
Sbjct: 406 CLQ------MEKVVLGFLVYSASLDQTFKVWRIKILSEDN--DEKMCLEYDATISSSGRE 465

Query: 122 DLKMKKLYETSPVLSPSWVQKKLQPNYF 147
                + Y+ SPVLSPSWV+KKLQ  YF
Sbjct: 466 GRVKVRDYDMSPVLSPSWVEKKLQGTYF 485

The following BLAST results are available for this feature:

BLAST of MELO3C003461 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LIS1_SCHMA	6.5e-06	37.78	Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1	[more]

BLAST of MELO3C003461 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061GIQ1_THECC	4.8e-32	53.79	Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037181...	[more]
A0A061GIQ1_THECC	2.4e+01	32.39	Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_037181...	[more]
B9H901_POPTR	8.2e-32	54.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25610g PE=4 SV=2	[more]
A0A0L9TE01_PHAAN	8.2e-32	53.79	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan561s002100 PE=4 SV=1	[more]
A0A0S3RCX2_PHAAN	8.2e-32	53.79	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G100300 PE=...	[more]

BLAST of MELO3C003461 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26490.1	6.2e-15	41.12	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G50390.1	8.1e-15	48.24	Transducin/WD40 repeat-like superfamily protein	[more]
AT4G34380.1	6.9e-14	44.19	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G18950.1	9.0e-14	45.16	Transducin/WD40 repeat-like superfamily protein	[more]
AT1G49450.1	1.5e-13	46.67	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of MELO3C003461 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133285\|ref\|XP_008466650.1\|	2.9e-78	100.00	PREDICTED: F-box/WD repeat-containing protein sel-10-like [Cucumis melo]	[more]
gi\|778689054\|ref\|XP_004136407.2\|	8.4e-38	85.86	PREDICTED: carotenoid 9,10(9',10')-cleavage dioxygenase 1-like [Cucumis sativus]	[more]
gi\|590573402\|ref\|XP_007012111.1\|	6.9e-32	53.79	Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]	[more]
gi\|590573402\|ref\|XP_007012111.1\|	3.5e+01	32.39	Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]	[more]
gi\|1012259064\|ref\|XP_015945610.1\|	9.0e-32	53.38	PREDICTED: myosin heavy chain kinase B-like [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016042	lipid catabolic process
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0008247	1-alkyl-2-acetylglycerophosphocholine esterase complex
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003847	1-alkyl-2-acetylglycerophosphocholine esterase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0004462	lactoylglutathione lyase activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003461T1	MELO3C003461T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 18..34 score: 0.0099coord: 44..92 score: 0
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 42..93 score: 1.3coord: 2..35 score:
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 20..34 score: 8
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 18..100 score: 1.6
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 14..94 score: 2.87
None	No IPR available	PANTHER	PTHR22844	F-BOX AND WD40 DOMAIN PROTEIN	coord: 14..110 score: 8.3
None	No IPR available	PANTHER	PTHR22844:SF213	SUBFAMILY NOT NAMED	coord: 14..110 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003461	Cla023115	Watermelon (97103) v1	mewmB387
MELO3C003461	Bhi09G002183	Wax gourd	mewgoB435
MELO3C003461	CSPI03G46130	Wild cucumber (PI 183967)	cpimeB215
MELO3C003461	CmoCh01G014850	Cucurbita moschata (Rifu)	cmomeB407
MELO3C003461	CsGy3G043620	Cucumber (Gy14) v2	cgybmeB185
MELO3C003461	Carg00381	Silver-seed gourd	carmeB0666

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003461	Cucurbita maxima (Rimu)	cmameB034
MELO3C003461	Cucurbita maxima (Rimu)	cmameB170
MELO3C003461	Cucurbita maxima (Rimu)	cmameB417
MELO3C003461	Cucurbita moschata (Rifu)	cmomeB023
MELO3C003461	Cucurbita moschata (Rifu)	cmomeB159
MELO3C003461	Wild cucumber (PI 183967)	cpimeB132
MELO3C003461	Cucumber (Chinese Long) v2	cumeB130
MELO3C003461	Cucumber (Chinese Long) v2	cumeB222
MELO3C003461	Watermelon (Charleston Gray)	mewcgB322
MELO3C003461	Watermelon (Charleston Gray)	mewcgB356
MELO3C003461	Watermelon (97103) v1	mewmB354
MELO3C003461	Cucurbita pepo (Zucchini)	cpemeB521
MELO3C003461	Cucurbita pepo (Zucchini)	cpemeB728
MELO3C003461	Bottle gourd (USVL1VR-Ls)	lsimeB310
MELO3C003461	Bottle gourd (USVL1VR-Ls)	lsimeB485
MELO3C003461	Silver-seed gourd	carmeB0631
MELO3C003461	Cucumber (Chinese Long) v3	cucmeB134
MELO3C003461	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003461	Watermelon (97103) v2	mewmbB323
MELO3C003461	Melon (DHL92) v3.5.1	memeB121
MELO3C003461	Cucumber (Gy14) v1	cgymeB282
MELO3C003461	Cucumber (Gy14) v1	cgymeB517