MELO3C003357 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003357
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionVacuolar protein sorting-associated protein, putative
Locationchr4 : 526778 .. 527487 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATTGATGAAGTTAAGCGTAGTGCTCAGCACCAAGTGAATAGAGCATTGAAAGATCGTTCGAGGTTAGCGAAAAACTTTGAGTTGAATTTGTCCCTTACTGACTTCTTGTCCATGTTTTAAAATTTTCTTTATTTTAATGAATTATCATGTGCAATGTTTAAAAATGTGAAATAGCATTCACTTATCTATTTTTTTTTTAGGTTTATTTTGTTGTTCTTCTCTTCTAAGGAGGGTAATTGATCTCTGAACCCCTTTTCATTGTCATACAAAAAAGAAAATAAAATATACTACAACCAGTCGATTTAAACTTTTAAGTTGAGTAGTGATTTAATAGGAAAATGAAAAATTACCTTGAACATTGTAATTGTATCTTTGAGCATTGGTCTCTTTTCATTTTATCAATGGAAAGTTATGTTTCCTTTTCAAAAAAAGAATTAAAGACCGAGAGTTATATAGGGATGTCTAAATCAAATGCTGCTGAATTGTTTAGATGCAAGTTATCCTATGGATGCGTCAGACCATTTTGTAAACTTTATCTCATATAATGTTTATCTATTTGTAGGTTTCTGCTGGACTTGGATATTGCAGCTCCTAAGATTACAATTCCTGCGGAGTTTCATCTTGATGATATCAATTCGATAAAGCTTCTGATTGATTTGGGTAATTTGCTGATACGAACACAGGTCCGTTTTACTCCTACTTAA

mRNA sequence

ATGACAATTGATGAAGTTAAGCGTAGTGCTCAGCACCAAGTGAATAGAGCATTGAAAGATCGTTCGAGGTTTCTGCTGGACTTGGATATTGCAGCTCCTAAGATTACAATTCCTGCGGAGTTTCATCTTGATGATATCAATTCGATAAAGCTTCTGATTGATTTGGGTAATTTGCTGATACGAACACAGGTCCGTTTTACTCCTACTTAA

Coding sequence (CDS)

ATGACAATTGATGAAGTTAAGCGTAGTGCTCAGCACCAAGTGAATAGAGCATTGAAAGATCGTTCGAGGTTTCTGCTGGACTTGGATATTGCAGCTCCTAAGATTACAATTCCTGCGGAGTTTCATCTTGATGATATCAATTCGATAAAGCTTCTGATTGATTTGGGTAATTTGCTGATACGAACACAGGTCCGTTTTACTCCTACTTAA

Protein sequence

MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLIRTQVRFTPT*
Homology
[Close]
BLAST of MELO3C003357 vs. TrEMBL
Match: A0A0A0LEI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G912290 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.0e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           +TIDEVKRSAQHQV+RALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 206 LTIDEVKRSAQHQVSRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 265

Query: 61  RTQ 64
           RTQ
Sbjct: 266 RTQ 268

[Close]
BLAST of MELO3C003357 vs. TrEMBL
Match: A0A068V0L1_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038369001 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-18
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MTIDEVKR+AQ QVNRALKD++RF LDL+IAAPKITIP +FH DD +S KLL+DLGNL+I
Sbjct: 618 MTIDEVKRTAQQQVNRALKDQARFSLDLNIAAPKITIPTDFHPDDAHSTKLLLDLGNLVI 677

Query: 61  RTQ 64
           RTQ
Sbjct: 678 RTQ 680

[Close]
BLAST of MELO3C003357 vs. TrEMBL
Match: A0A0B0MTI4_GOSAR (Putative vacuolar sorting-associated protein 13A OS=Gossypium arboreum GN=F383_31333 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-18
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MTIDEVKRSAQ QVNRALKD +RFLLDLDIAAPKITIP EF  D+ +S KLL+DLGNL+I
Sbjct: 584 MTIDEVKRSAQQQVNRALKDHTRFLLDLDIAAPKITIPTEFQPDNKHSTKLLLDLGNLII 643

Query: 61  RTQ 64
           R+Q
Sbjct: 644 RSQ 646

[Close]
BLAST of MELO3C003357 vs. TrEMBL
Match: A0A067LC48_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11885 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-18
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MTIDEVKR+AQ Q+NRALKD+SRFLLDLDIAAPKITIP EF  ++I+S KLL+DLGNL+I
Sbjct: 615 MTIDEVKRTAQQQMNRALKDQSRFLLDLDIAAPKITIPTEFCPNNIHSTKLLLDLGNLVI 674

Query: 61  RTQVRFTPT 70
           R+Q    P+
Sbjct: 675 RSQDEKRPS 683

[Close]
BLAST of MELO3C003357 vs. TrEMBL
Match: B9GW15_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s03360g PE=4 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MT D VKRSAQ QVNRALKD +RFLLDLDIAAPKITIP EF+ D+I+S KLL+DLGNL+I
Sbjct: 488 MTFDGVKRSAQQQVNRALKDHARFLLDLDIAAPKITIPTEFYPDNIHSTKLLLDLGNLVI 547

Query: 61  RTQ 64
           R++
Sbjct: 548 RSE 550

[Close]
BLAST of MELO3C003357 vs. TAIR10
Match: AT4G17140.3 (AT4G17140.3 pleckstrin homology (PH) domain-containing protein)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-19
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 1 

Query: 2   TIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLIR 61
           TIDEV+R+AQ  +NRALKD SRFLLDLDIAAPKITIP EF  D+  S KLL+DLGNL+IR
Sbjct: 615 TIDEVRRTAQEGMNRALKDHSRFLLDLDIAAPKITIPTEFRPDNHRSTKLLLDLGNLVIR 674

Query: 62  TQ 64
           +Q
Sbjct: 675 SQ 676

[Close]
BLAST of MELO3C003357 vs. TAIR10
Match: AT1G48090.1 (AT1G48090.1 calcium-dependent lipid-binding family protein)

HSP 1 Score: 50.4 bits (119), Expect = 5.1e-07
Identity = 26/62 (41.94%), Postives = 34/62 (54.84%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           M ++EV R AQ Q+   L+++SRF LD+DI APK+ IP         S   L+D GN  +
Sbjct: 673 MKLEEVTRRAQEQLQIVLEEQSRFALDIDIDAPKVRIPLRASGSSKCSSHFLLDFGNFTL 732

Query: 61  RT 63
            T
Sbjct: 733 TT 734

[Close]
BLAST of MELO3C003357 vs. NCBI nr
Match: gi|659131900|ref|XP_008465914.1| (PREDICTED: uncharacterized protein LOC103503494 isoform X1 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 613 MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 672

Query: 61  RTQ 64
           RTQ
Sbjct: 673 RTQ 675

[Close]
BLAST of MELO3C003357 vs. NCBI nr
Match: gi|659131902|ref|XP_008465915.1| (PREDICTED: uncharacterized protein LOC103503494 isoform X2 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 613 MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 672

Query: 61  RTQ 64
           RTQ
Sbjct: 673 RTQ 675

[Close]
BLAST of MELO3C003357 vs. NCBI nr
Match: gi|778688114|ref|XP_011652679.1| (PREDICTED: uncharacterized protein LOC101212417 isoform X2 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           +TIDEVKRSAQHQV+RALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 614 LTIDEVKRSAQHQVSRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 673

Query: 61  RTQ 64
           RTQ
Sbjct: 674 RTQ 676

[Close]
BLAST of MELO3C003357 vs. NCBI nr
Match: gi|700205312|gb|KGN60445.1| (hypothetical protein Csa_3G912290 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           +TIDEVKRSAQHQV+RALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 206 LTIDEVKRSAQHQVSRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 265

Query: 61  RTQ 64
           RTQ
Sbjct: 266 RTQ 268

[Close]
BLAST of MELO3C003357 vs. NCBI nr
Match: gi|778688111|ref|XP_011652678.1| (PREDICTED: uncharacterized protein LOC101212417 isoform X1 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 8.7e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1   MTIDEVKRSAQHQVNRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 60
           +TIDEVKRSAQHQV+RALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI
Sbjct: 614 LTIDEVKRSAQHQVSRALKDRSRFLLDLDIAAPKITIPAEFHLDDINSIKLLIDLGNLLI 673

Query: 61  RTQ 64
           RTQ
Sbjct: 674 RTQ 676

The following BLAST results are available for this feature:
BLAST of MELO3C003357 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEI9_CUCSA6.0e-2596.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G912290 PE=4 SV=1[more]
A0A068V0L1_COFCA1.4e-1877.78Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038369001 PE=4 SV=1[more]
A0A0B0MTI4_GOSAR2.5e-1879.37Putative vacuolar sorting-associated protein 13A OS=Gossypium arboreum GN=F383_3... [more]
A0A067LC48_JATCU5.5e-1872.46Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11885 PE=4 SV=1[more]
B9GW15_POPTR1.2e-1776.19Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s03360g PE=4 SV=2[more]
BLAST of MELO3C003357 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17140.32.6e-1974.19 pleckstrin homology (PH) domain-containing protein[more]
AT1G48090.15.1e-0741.94 calcium-dependent lipid-binding family protein[more]
BLAST of MELO3C003357 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131900|ref|XP_008465914.1|1.0e-25100.00PREDICTED: uncharacterized protein LOC103503494 isoform X1 [Cucumis melo][more]
gi|659131902|ref|XP_008465915.1|1.0e-25100.00PREDICTED: uncharacterized protein LOC103503494 isoform X2 [Cucumis melo][more]
gi|778688114|ref|XP_011652679.1|8.7e-2596.83PREDICTED: uncharacterized protein LOC101212417 isoform X2 [Cucumis sativus][more]
gi|700205312|gb|KGN60445.1|8.7e-2596.83hypothetical protein Csa_3G912290 [Cucumis sativus][more]
gi|778688111|ref|XP_011652678.1|8.7e-2596.83PREDICTED: uncharacterized protein LOC101212417 isoform X1 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003357T1MELO3C003357T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026847Vacuolar protein sorting-associated protein 13PANTHERPTHR16166VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13coord: 1..63
score: 5.8
NoneNo IPR availablePANTHERPTHR16166:SF105PLECKSTRIN HOMOLOGY (PH) DOMAIN-CONTAINING PROTEINcoord: 1..63
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003357Cucurbita moschata (Rifu)cmomeB282
MELO3C003357Cucurbita moschata (Rifu)cmomeB463
MELO3C003357Cucurbita moschata (Rifu)cmomeB556
MELO3C003357Cucurbita moschata (Rifu)cmomeB746
MELO3C003357Wild cucumber (PI 183967)cpimeB215
MELO3C003357Wild cucumber (PI 183967)cpimeB218
MELO3C003357Wild cucumber (PI 183967)cpimeB224
MELO3C003357Cucumber (Chinese Long) v2cumeB222
MELO3C003357Cucumber (Chinese Long) v2cumeB227
MELO3C003357Watermelon (Charleston Gray)mewcgB310
MELO3C003357Watermelon (Charleston Gray)mewcgB317
MELO3C003357Watermelon (97103) v1mewmB342
MELO3C003357Watermelon (97103) v1mewmB347
MELO3C003357Watermelon (97103) v1mewmB375
MELO3C003357Cucurbita pepo (Zucchini)cpemeB038
MELO3C003357Cucurbita pepo (Zucchini)cpemeB689
MELO3C003357Bottle gourd (USVL1VR-Ls)lsimeB351
MELO3C003357Bottle gourd (USVL1VR-Ls)lsimeB439
MELO3C003357Cucumber (Gy14) v2cgybmeB185
MELO3C003357Cucumber (Gy14) v2cgybmeB188
MELO3C003357Cucumber (Gy14) v2cgybmeB193
MELO3C003357Silver-seed gourdcarmeB0568
MELO3C003357Silver-seed gourdcarmeB0702
MELO3C003357Silver-seed gourdcarmeB0771
MELO3C003357Cucumber (Chinese Long) v3cucmeB219
MELO3C003357Cucumber (Chinese Long) v3cucmeB222
MELO3C003357Cucumber (Chinese Long) v3cucmeB227
MELO3C003357Watermelon (97103) v2mewmbB318
MELO3C003357Watermelon (97103) v2mewmbB340
MELO3C003357Watermelon (97103) v2mewmbB363
MELO3C003357Wax gourdmewgoB378
MELO3C003357Wax gourdmewgoB400
MELO3C003357Wax gourdmewgoB402
MELO3C003357Melon (DHL92) v3.5.1memeB141
MELO3C003357Melon (DHL92) v3.5.1memeB139
MELO3C003357Cucumber (Gy14) v1cgymeB432
MELO3C003357Cucumber (Gy14) v1cgymeB517
MELO3C003357Cucumber (Gy14) v1cgymeB531
MELO3C003357Cucurbita maxima (Rimu)cmameB289
MELO3C003357Cucurbita maxima (Rimu)cmameB473
MELO3C003357Cucurbita maxima (Rimu)cmameB567
MELO3C003357Cucurbita maxima (Rimu)cmameB754