MELO3C003356 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003356
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Sister chromatid cohesion PDS5 B
Location	chr4 : 525390 .. 525761 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTTCACCCAAAAAGGGTGGAGTGACTTCCTCCAGCAAATCCAAGGGTGCAGCTACAAAACTAGCAGGAGTAGTGGCAGTAAAGTTGAAAGCAAGTCGAAAGAGAATACCCCTAAGGTTGGAAGACAAACAGCTGTTACAGGTAGCAAATCAAAGGATCAAGGCTCCTAAAACTGGAAGTAAACTTGGTAGCACAGCTCCTAAAACCGCCGGCAAGTCGAAGAACGACGATGCTGAATCCAACGAGACTAACAAATATAAGGATGATGAAACATCCACACCTGCCGCTGTTCCAAAGTCCAACAAGCAAGATGTATCGGAGACGGGGAAGTCCAAACAAGAAACCCCAAAAATTCTTGTTTCTTAG

mRNA sequence

ATGGATGCTTCACCCAAAAAGGGTGGAGTGACTTCCTCCAGCAAATCCAAGGGTGCAGCTACAAAACTAGCAGGAGTAGTGGCAGTAAAGTTGAAAGCAAGTCGAAAGAGAATACCCCTAAGGTTGGAAGACAAACAGCTGTTACAGGTAGCAAATCAAAGGATCAAGGCTCCTAAAACTGGAAGTAAACTTGGTAGCACAGCTCCTAAAACCGCCGGCAAGTCGAAGAACGACGATGCTGAATCCAACGAGACTAACAAATATAAGGATGATGAAACATCCACACCTGCCGCTGTTCCAAAGTCCAACAAGCAAGATGTATCGGAGACGGGGAAGTCCAAACAAGAAACCCCAAAAATTCTTGTTTCTTAG

Coding sequence (CDS)

ATGGATGCTTCACCCAAAAAGGGTGGAGTGACTTCCTCCAGCAAATCCAAGGGTGCAGCTACAAAACTAGCAGGAGTAGTGGCAGTAAAGTTGAAAGCAAGTCGAAAGAGAATACCCCTAAGGTTGGAAGACAAACAGCTGTTACAGGTAGCAAATCAAAGGATCAAGGCTCCTAAAACTGGAAGTAAACTTGGTAGCACAGCTCCTAAAACCGCCGGCAAGTCGAAGAACGACGATGCTGAATCCAACGAGACTAACAAATATAAGGATGATGAAACATCCACACCTGCCGCTGTTCCAAAGTCCAACAAGCAAGATGTATCGGAGACGGGGAAGTCCAAACAAGAAACCCCAAAAATTCTTGTTTCTTAG

Protein sequence

MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIKAPKTGSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPKILVS*

Homology

[Close]

BLAST of MELO3C003356 vs. TrEMBL
Match: A0A0A0LM52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 80/124 (64.52%), Postives = 92/124 (74.19%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIK-APK 60
           MDASPKKGGVTSSSKSKGAATK       K+++  K    ++     +  +  + +  PK
Sbjct: 719 MDASPKKGGVTSSSKSKGAATKTDRSSGSKVESKSKENTPKVGRHTAVTGSKSKDQGTPK 778

Query: 61  TGSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPK 120
           TGSKLGST PK AGKSKNDDAESN+T+K KDDETSTP AV KSNKQDVS+TGKSKQETPK
Sbjct: 779 TGSKLGSTGPKIAGKSKNDDAESNKTSKSKDDETSTPVAVAKSNKQDVSKTGKSKQETPK 838

Query: 121 ILVS 124
             VS
Sbjct: 839 TPVS 842

[Close]

BLAST of MELO3C003356 vs. TrEMBL
Match: A0A0D2RV36_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GGVTSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 728 MDASPKRGGVTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVSKSGNDSVAKSKD 787

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 788 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 847

[Close]

BLAST of MELO3C003356 vs. TrEMBL
Match: A0A0D2TKJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GGVTSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 678 MDASPKRGGVTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVSKSGNDSVAKSKD 737

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 738 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 797

[Close]

BLAST of MELO3C003356 vs. TrEMBL
Match: A0A0D2UH79_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.9e-14
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GGVTSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 587 MDASPKRGGVTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVSKSGNDSVAKSKD 646

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 647 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 706

[Close]

BLAST of MELO3C003356 vs. TrEMBL
Match: A0A0D2QA55_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G061900 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 57/127 (44.88%), Postives = 72/127 (56.69%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GG TSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 734 MDASPKRGGGTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVGKSGNDSVAKSKD 793

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 794 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 853

[Close]

BLAST of MELO3C003356 vs. NCBI nr
Match: gi|659131898|ref|XP_008465913.1| (PREDICTED: micronuclear linker histone polyprotein-like [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 3.6e-58
Identity = 121/123 (98.37%), Postives = 121/123 (98.37%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIKAPKT 60
           MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIKAPKT
Sbjct: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIKAPKT 60

Query: 61  GSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPKI 120
           GSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPK 
Sbjct: 61  GSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPKT 120

Query: 121 LVS 124
            VS
Sbjct: 121 PVS 123

[Close]

BLAST of MELO3C003356 vs. NCBI nr
Match: gi|778672647|ref|XP_011649845.1| (PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-31
Identity = 80/124 (64.52%), Postives = 92/124 (74.19%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRIK-APK 60
           MDASPKKGGVTSSSKSKGAATK       K+++  K    ++     +  +  + +  PK
Sbjct: 719 MDASPKKGGVTSSSKSKGAATKTDRSSGSKVESKSKENTPKVGRHTAVTGSKSKDQGTPK 778

Query: 61  TGSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPK 120
           TGSKLGST PK AGKSKNDDAESN+T+K KDDETSTP AV KSNKQDVS+TGKSKQETPK
Sbjct: 779 TGSKLGSTGPKIAGKSKNDDAESNKTSKSKDDETSTPVAVAKSNKQDVSKTGKSKQETPK 838

Query: 121 ILVS 124
             VS
Sbjct: 839 TPVS 842

[Close]

BLAST of MELO3C003356 vs. NCBI nr
Match: gi|659088976|ref|XP_008445261.1| (PREDICTED: dentin sialophosphoprotein [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-28
Identity = 78/124 (62.90%), Postives = 87/124 (70.16%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRI-PLRLEDKQLLQVANQRIKAPK 60
           MDASPKKGG TSSSKSKGAATK       K+++  K   P       +    ++    PK
Sbjct: 712 MDASPKKGGGTSSSKSKGAATKTDRSSGSKVESKLKETTPKGGRHTAVTGSKSKDQGTPK 771

Query: 61  TGSKLGSTAPKTAGKSKNDDAESNETNKYKDDETSTPAAVPKSNKQDVSETGKSKQETPK 120
           TGSK GST PK AGKSKNDDAESN+T+K KDDETSTPA V KS KQDVS+TGKSKQETPK
Sbjct: 772 TGSKPGSTGPKIAGKSKNDDAESNKTSKSKDDETSTPAVVAKSIKQDVSKTGKSKQETPK 831

Query: 121 ILVS 124
             VS
Sbjct: 832 TPVS 835

[Close]

BLAST of MELO3C003356 vs. NCBI nr
Match: gi|823218276|ref|XP_012441787.1| (PREDICTED: LOW QUALITY PROTEIN: protein IWS1 homolog [Gossypium raimondii])

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GGVTSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 728 MDASPKRGGVTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVSKSGNDSVAKSKD 787

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 788 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 847

[Close]

BLAST of MELO3C003356 vs. NCBI nr
Match: gi|763788080|gb|KJB55076.1| (hypothetical protein B456_009G062000 [Gossypium raimondii])

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 58/127 (45.67%), Postives = 73/127 (57.48%), Query Frame = 1


Query: 1   MDASPKKGGVTSSSKSKGAATKLAGVVAVKLKASRKRIPLRLEDKQLLQVANQRI----- 60
           MDASPK+GGVTSS KSKG+ATK         K   K    +   K + +  N  +     
Sbjct: 678 MDASPKRGGVTSSGKSKGSATKSGRKTKEDAKVDGKS---KDGSKSVSKSGNDSVAKSKD 737

Query: 61  -KAPKTGSKLGSTAPKTAGKSKNDDA-ESNETNKYKDDETSTPAAVPKSNKQDVSETGKS 120
              PKTGSK    A K   KSKN+++ E+ ++ K KDD ++TP A  K  KQDV +TG S
Sbjct: 738 PSTPKTGSKPVDNASKADKKSKNEESGETPKSTKSKDDGSATPKASSKL-KQDVPKTGNS 797

The following BLAST results are available for this feature:

BLAST of MELO3C003356 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM52_CUCSA	1.2e-31	64.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1	[more]
A0A0D2RV36_GOSRA	2.9e-14	45.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1	[more]
A0A0D2TKJ9_GOSRA	2.9e-14	45.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1	[more]
A0A0D2UH79_GOSRA	2.9e-14	45.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G062000 PE=4 SV=1	[more]
A0A0D2QA55_GOSRA	3.2e-13	44.88	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G061900 PE=4 SV=1	[more]

BLAST of MELO3C003356 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131898\|ref\|XP_008465913.1\|	3.6e-58	98.37	PREDICTED: micronuclear linker histone polyprotein-like [Cucumis melo]	[more]
gi\|778672647\|ref\|XP_011649845.1\|	1.7e-31	64.52	PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus]	[more]
gi\|659088976\|ref\|XP_008445261.1\|	1.7e-28	62.90	PREDICTED: dentin sialophosphoprotein [Cucumis melo]	[more]
gi\|823218276\|ref\|XP_012441787.1\|	4.2e-14	45.67	PREDICTED: LOW QUALITY PROTEIN: protein IWS1 homolog [Gossypium raimondii]	[more]
gi\|763788080\|gb\|KJB55076.1\|	4.2e-14	45.67	hypothetical protein B456_009G062000 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003356T1	MELO3C003356T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003356	Watermelon (97103) v2	mewmbB318
MELO3C003356	Watermelon (97103) v2	mewmbB340
MELO3C003356	Watermelon (97103) v2	mewmbB363
MELO3C003356	Wax gourd	mewgoB378
MELO3C003356	Wax gourd	mewgoB400
MELO3C003356	Wax gourd	mewgoB402
MELO3C003356	Melon (DHL92) v3.5.1	memeB141
MELO3C003356	Melon (DHL92) v3.5.1	memeB139
MELO3C003356	Cucumber (Gy14) v1	cgymeB432
MELO3C003356	Cucumber (Gy14) v1	cgymeB517
MELO3C003356	Cucumber (Gy14) v1	cgymeB531
MELO3C003356	Cucurbita maxima (Rimu)	cmameB289
MELO3C003356	Cucurbita maxima (Rimu)	cmameB473
MELO3C003356	Cucurbita maxima (Rimu)	cmameB567
MELO3C003356	Cucurbita maxima (Rimu)	cmameB754
MELO3C003356	Cucurbita moschata (Rifu)	cmomeB282
MELO3C003356	Cucurbita moschata (Rifu)	cmomeB463
MELO3C003356	Cucurbita moschata (Rifu)	cmomeB556
MELO3C003356	Cucurbita moschata (Rifu)	cmomeB746
MELO3C003356	Wild cucumber (PI 183967)	cpimeB215
MELO3C003356	Wild cucumber (PI 183967)	cpimeB218
MELO3C003356	Wild cucumber (PI 183967)	cpimeB224
MELO3C003356	Cucumber (Chinese Long) v2	cumeB222
MELO3C003356	Cucumber (Chinese Long) v2	cumeB227
MELO3C003356	Watermelon (Charleston Gray)	mewcgB310
MELO3C003356	Watermelon (Charleston Gray)	mewcgB317
MELO3C003356	Watermelon (97103) v1	mewmB342
MELO3C003356	Watermelon (97103) v1	mewmB347
MELO3C003356	Watermelon (97103) v1	mewmB375
MELO3C003356	Cucurbita pepo (Zucchini)	cpemeB038
MELO3C003356	Cucurbita pepo (Zucchini)	cpemeB689
MELO3C003356	Bottle gourd (USVL1VR-Ls)	lsimeB351
MELO3C003356	Bottle gourd (USVL1VR-Ls)	lsimeB439
MELO3C003356	Cucumber (Gy14) v2	cgybmeB185
MELO3C003356	Cucumber (Gy14) v2	cgybmeB188
MELO3C003356	Cucumber (Gy14) v2	cgybmeB193
MELO3C003356	Silver-seed gourd	carmeB0568
MELO3C003356	Silver-seed gourd	carmeB0702
MELO3C003356	Silver-seed gourd	carmeB0771
MELO3C003356	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003356	Cucumber (Chinese Long) v3	cucmeB222
MELO3C003356	Cucumber (Chinese Long) v3	cucmeB227