MELO3C003355 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003355
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionSister chromatid cohesion protein PDS5 like B-B
Locationchr4 : 524273 .. 524473 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAAAGGAAATGACACCTGTGCTGAAACCAGCCTCCAAAAACACCAAAGATGGGAAGATTGTGGTCAAGACTCCAACAGTTTCCAAGAGGAAACGAACTCCTGTCAAAGAAAAAGAGTCTAGAACCAGGGGTTTTGATGAATCTTTGGTTGGTTCAAAGATAAAAGTGGTGGCCAAAAGATCGCATGTTTTATGA

mRNA sequence

ATGGATAAAAAGGAAATGACACCTGTGCTGAAACCAGCCTCCAAAAACACCAAAGATGGGAAGATTGTGGTCAAGACTCCAACAGTTTCCAAGAGGAAACGAACTCCTGTCAAAGAAAAAGAGTCTAGAACCAGGGGTTTTGATGAATCTTTGGTTGGTTCAAAGATAAAAGTGGTGGCCAAAAGATCGCATGTTTTATGA

Coding sequence (CDS)

ATGGATAAAAAGGAAATGACACCTGTGCTGAAACCAGCCTCCAAAAACACCAAAGATGGGAAGATTGTGGTCAAGACTCCAACAGTTTCCAAGAGGAAACGAACTCCTGTCAAAGAAAAAGAGTCTAGAACCAGGGGTTTTGATGAATCTTTGGTTGGTTCAAAGATAAAAGTGGTGGCCAAAAGATCGCATGTTTTATGA

Protein sequence

MDKKEMTPVLKPASKNTKDGKIVVKTPTVSKRKRTPVKEKESRTRGFDESLVGSKIKVVAKRSHVL*
Homology
[Close]
BLAST of MELO3C003355 vs. TrEMBL
Match: A0A0A0LM52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.9e-16
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 2   DKKEMTPVLKPASKNTKDGKIVVKTP-TVSKRKRTPVKEKES-----RTRGFDESLVGSK 59
           DKKE TPVLKPASKNTKD KIV KTP TVSKRKRTPVKEKES      T+GFDESLVGSK
Sbjct: 570 DKKETTPVLKPASKNTKDEKIVDKTPTTVSKRKRTPVKEKESGTGTGGTKGFDESLVGSK 629

[Close]
BLAST of MELO3C003355 vs. NCBI nr
Match: gi|659088976|ref|XP_008445261.1| (PREDICTED: dentin sialophosphoprotein [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-17
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 1 

Query: 2   DKKEMTPVLKPASKNTKDGKIVVKTP-TVSKRKRTPVKEKESRTRGFDESLVGSKIKV 59
           DKKE TPV KPASKNTKD KIV KTP TVSKRKRTPVKEKES T+GFDESLVGSKIKV
Sbjct: 568 DKKETTPVQKPASKNTKDEKIVDKTPTTVSKRKRTPVKEKESETKGFDESLVGSKIKV 625

[Close]
BLAST of MELO3C003355 vs. NCBI nr
Match: gi|778672647|ref|XP_011649845.1| (PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 7.0e-16
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1 

Query: 2   DKKEMTPVLKPASKNTKDGKIVVKTP-TVSKRKRTPVKEKES-----RTRGFDESLVGSK 59
           DKKE TPVLKPASKNTKD KIV KTP TVSKRKRTPVKEKES      T+GFDESLVGSK
Sbjct: 570 DKKETTPVLKPASKNTKDEKIVDKTPTTVSKRKRTPVKEKESGTGTGGTKGFDESLVGSK 629

The following BLAST results are available for this feature:
BLAST of MELO3C003355 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM52_CUCSA4.9e-1682.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382630 PE=4 SV=1[more]
BLAST of MELO3C003355 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659088976|ref|XP_008445261.1|2.9e-1787.93PREDICTED: dentin sialophosphoprotein [Cucumis melo][more]
gi|778672647|ref|XP_011649845.1|7.0e-1682.54PREDICTED: muscle M-line assembly protein unc-89 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003355T1MELO3C003355T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003355Watermelon (97103) v2mewmbB318
MELO3C003355Watermelon (97103) v2mewmbB340
MELO3C003355Watermelon (97103) v2mewmbB363
MELO3C003355Wax gourdmewgoB378
MELO3C003355Wax gourdmewgoB400
MELO3C003355Wax gourdmewgoB402
MELO3C003355Melon (DHL92) v3.5.1memeB141
MELO3C003355Melon (DHL92) v3.5.1memeB139
MELO3C003355Cucumber (Gy14) v1cgymeB432
MELO3C003355Cucumber (Gy14) v1cgymeB517
MELO3C003355Cucumber (Gy14) v1cgymeB531
MELO3C003355Cucurbita maxima (Rimu)cmameB289
MELO3C003355Cucurbita maxima (Rimu)cmameB473
MELO3C003355Cucurbita maxima (Rimu)cmameB567
MELO3C003355Cucurbita maxima (Rimu)cmameB754
MELO3C003355Cucurbita moschata (Rifu)cmomeB282
MELO3C003355Cucurbita moschata (Rifu)cmomeB463
MELO3C003355Cucurbita moschata (Rifu)cmomeB556
MELO3C003355Cucurbita moschata (Rifu)cmomeB746
MELO3C003355Wild cucumber (PI 183967)cpimeB215
MELO3C003355Wild cucumber (PI 183967)cpimeB218
MELO3C003355Wild cucumber (PI 183967)cpimeB224
MELO3C003355Cucumber (Chinese Long) v2cumeB222
MELO3C003355Cucumber (Chinese Long) v2cumeB227
MELO3C003355Watermelon (Charleston Gray)mewcgB310
MELO3C003355Watermelon (Charleston Gray)mewcgB317
MELO3C003355Watermelon (97103) v1mewmB342
MELO3C003355Watermelon (97103) v1mewmB347
MELO3C003355Watermelon (97103) v1mewmB375
MELO3C003355Cucurbita pepo (Zucchini)cpemeB038
MELO3C003355Cucurbita pepo (Zucchini)cpemeB689
MELO3C003355Bottle gourd (USVL1VR-Ls)lsimeB351
MELO3C003355Bottle gourd (USVL1VR-Ls)lsimeB439
MELO3C003355Cucumber (Gy14) v2cgybmeB185
MELO3C003355Cucumber (Gy14) v2cgybmeB188
MELO3C003355Cucumber (Gy14) v2cgybmeB193
MELO3C003355Silver-seed gourdcarmeB0568
MELO3C003355Silver-seed gourdcarmeB0702
MELO3C003355Silver-seed gourdcarmeB0771
MELO3C003355Cucumber (Chinese Long) v3cucmeB219
MELO3C003355Cucumber (Chinese Long) v3cucmeB222
MELO3C003355Cucumber (Chinese Long) v3cucmeB227