MELO3C003352 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003352
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	40S ribosomal protein S11
Location	chr4 : 507857 .. 508336 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAACAAATGGAGAAGGCTTTCCTGGAGCAGCCTAAGGTGTTCCTTTGCTCAAAGAAATCGGGCAGAGGAAAGAGGACAGGAAAAGAAGGAAATCAGTTCTGGAAGAGCATTGGTTTGGGGTTTAAAACTCCCAGAGATGCGATTGAAGGAATCTACATTGATAAGAAGTGCCCATTCACTGGCACTGCTTCTATTAGCGGGTGTATACTTGCTGTTACCTGCCATAGTGCTAAGATGGTCAAAACCGTCATTCTTAGACATAGTTATCTTCATTATGTGAAGAAATATCAAAGGTACGAAAAGAGGCACTCTAACATTCCAGACACATAGCTCCCTTGCTTTAGGATTAAGAGGGAGACCATGTTATCATTTGGCCAATGCAGGCCCTTGTCGAAGACCGTGATGTTTAATGTATTGAAAGTGATTCCTGTTGGATCATCCAAAGGTGGAAAAAAGGCTTTTACAGGGATTTAA

mRNA sequence

ATGGCAGAACAAATGGAGAAGGCTTTCCTGGAGCAGCCTAAGGTGTTCCTTTGCTCAAAGAAATCGGGCAGAGGAAAGAGGACAGGAAAAGAAGGAAATCAGTTCTGGAAGAGCATTGGTTTGGGGTTTAAAACTCCCAGAGATGCGATTGAAGGAATCTACATTGATAAGAAGTGCCCATTCACTGGCACTGCTTCTATTAGCGGGTGTATACTTGCTGTTACCTGCCATAGTGCTAAGATGGTCAAAACCGTCATTCTTAGACATAGTTATCTTCATTATGTGAAGAAATATCAAAGGCCCTTGTCGAAGACCGTGATGTTTAATGTATTGAAAGTGATTCCTGTTGGATCATCCAAAGGTGGAAAAAAGGCTTTTACAGGGATTTAA

Coding sequence (CDS)

ATGGCAGAACAAATGGAGAAGGCTTTCCTGGAGCAGCCTAAGGTGTTCCTTTGCTCAAAGAAATCGGGCAGAGGAAAGAGGACAGGAAAAGAAGGAAATCAGTTCTGGAAGAGCATTGGTTTGGGGTTTAAAACTCCCAGAGATGCGATTGAAGGAATCTACATTGATAAGAAGTGCCCATTCACTGGCACTGCTTCTATTAGCGGGTGTATACTTGCTGTTACCTGCCATAGTGCTAAGATGGTCAAAACCGTCATTCTTAGACATAGTTATCTTCATTATGTGAAGAAATATCAAAGGCCCTTGTCGAAGACCGTGATGTTTAATGTATTGAAAGTGATTCCTGTTGGATCATCCAAAGGTGGAAAAAAGGCTTTTACAGGGATTTAA

Protein sequence

MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCPFTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQRPLSKTVMFNVLKVIPVGSSKGGKKAFTGI*

Homology

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BLAST of MELO3C003352 vs. Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 194.1 bits (492), Expect = 9.3e-49
Identity = 100/159 (62.89%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL +KK+G+GKR GK GN+FWKSIGLGFKTPR+AIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTG  SI G ILA TCHSAKM +T+I+R +YLH++KKYQ                     
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS G KKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

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BLAST of MELO3C003352 vs. Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.6e-48
Identity = 101/159 (63.52%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKK+G+GKR GK GN+FWKSIGLGFKTPR+AI+G YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM +T+I+R +YLH++KKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS G KKAFT I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of MELO3C003352 vs. Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 4.6e-48
Identity = 100/159 (62.89%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWK+IGLGFKTPR+AIEG YID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G IL+ TCHSAKM +T+I+R  YLH+VKKY+                     
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS  GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

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BLAST of MELO3C003352 vs. Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-48
Identity = 99/157 (63.06%), Postives = 110/157 (70.06%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GK+ GK GN+FWKSIGLGFKTPR+AIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G I+A TCHSAKM +T+I+R +YLH+VKKYQ                     
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFT 128
                    RPLSKTV FNV+KVIP GS+  GKKAFT
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157

[Close]

BLAST of MELO3C003352 vs. Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.1e-48
Identity = 101/160 (63.12%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM +T+I+R  YLH+VKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKG-GKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS   GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

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BLAST of MELO3C003352 vs. TrEMBL
Match: W9S011_9ROSA (40S ribosomal protein S11 OS=Morus notabilis GN=L484_008524 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 3.7e-52
Identity = 101/129 (78.29%), Postives = 113/129 (87.60%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFLCSKK  +G+  GK GN+FWK++GLGFKTPRDAIE  YIDKKCP
Sbjct: 56  MAEQTEKAFLKQPKVFLCSKKPLKGRNPGKGGNRFWKNVGLGFKTPRDAIEATYIDKKCP 115

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQRPLSKTVMFNVLKVIPVGSSK 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLH+VKKYQRPLSKTV FNVLKVIP GSS 
Sbjct: 116 FTGTVSIRGRILAGTCHSAKMIRTIIVRRNYLHFVKKYQRPLSKTVRFNVLKVIPAGSSG 175

Query: 121 GGKKAFTGI 130
           GGKKAFTGI
Sbjct: 176 GGKKAFTGI 184

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BLAST of MELO3C003352 vs. TrEMBL
Match: A0A0A0LPP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382430 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.5e-50
Identity = 108/159 (67.92%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPRDAIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKMV+T+I+R +YLHYVKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]

BLAST of MELO3C003352 vs. TrEMBL
Match: A0A061GP47_THECC (Ribosomal protein S11-beta OS=Theobroma cacao GN=TCM_038251 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-49
Identity = 106/159 (66.67%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPR+AIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLHY+KKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

[Close]

BLAST of MELO3C003352 vs. TrEMBL
Match: A0A0D2R2N3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G056800 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.3e-49
Identity = 105/159 (66.04%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPR+A EGIYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREATEGIYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLHY+KKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMIRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGM 159

[Close]

BLAST of MELO3C003352 vs. TrEMBL
Match: A0A087GIF5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G161800 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-49
Identity = 107/159 (67.30%), Postives = 114/159 (71.70%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFLCSKKSG+GKR GK GN+FWKSIGLGFKTPRDAIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGAYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM +T+I+R  YLH+VKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS  GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAIGKKAFTGI 159

[Close]

BLAST of MELO3C003352 vs. TAIR10
Match: AT4G30800.1 (AT4G30800.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 191.8 bits (486), Expect = 2.6e-49
Identity = 100/159 (62.89%), Postives = 111/159 (69.81%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWK+IGLGFKTPR+AIEG YID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G IL+ TCHSAKM +T+I+R  YLH+VKKY+                     
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS  GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

[Close]

BLAST of MELO3C003352 vs. TAIR10
Match: AT3G48930.1 (AT3G48930.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 191.4 bits (485), Expect = 3.4e-49
Identity = 101/160 (63.12%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWK+IGLGFKTPR+AI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM +T+I+R  YLH+VKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKG-GKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS   GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of MELO3C003352 vs. TAIR10
Match: AT5G23740.1 (AT5G23740.1 ribosomal protein S11-beta)

HSP 1 Score: 189.9 bits (481), Expect = 9.9e-49
Identity = 99/159 (62.26%), Postives = 110/159 (69.18%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SK SG+GKR GK GN+FWK+IGLGFKTPR+AI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM +T+I+R +YLH+VKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP G+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of MELO3C003352 vs. NCBI nr
Match: gi|703111471|ref|XP_010099867.1| (40S ribosomal protein S11 [Morus notabilis])

HSP 1 Score: 212.2 bits (539), Expect = 5.3e-52
Identity = 101/129 (78.29%), Postives = 113/129 (87.60%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFLCSKK  +G+  GK GN+FWK++GLGFKTPRDAIE  YIDKKCP
Sbjct: 56  MAEQTEKAFLKQPKVFLCSKKPLKGRNPGKGGNRFWKNVGLGFKTPRDAIEATYIDKKCP 115

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQRPLSKTVMFNVLKVIPVGSSK 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLH+VKKYQRPLSKTV FNVLKVIP GSS 
Sbjct: 116 FTGTVSIRGRILAGTCHSAKMIRTIIVRRNYLHFVKKYQRPLSKTVRFNVLKVIPAGSSG 175

Query: 121 GGKKAFTGI 130
           GGKKAFTGI
Sbjct: 176 GGKKAFTGI 184

[Close]

BLAST of MELO3C003352 vs. NCBI nr
Match: gi|449441892|ref|XP_004138716.1| (PREDICTED: 40S ribosomal protein S11 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 5.0e-50
Identity = 108/159 (67.92%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPRDAIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKMV+T+I+R +YLHYVKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSAGGKKAFAGI 159

[Close]

BLAST of MELO3C003352 vs. NCBI nr
Match: gi|659088938|ref|XP_008445242.1| (PREDICTED: 40S ribosomal protein S11 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 5.0e-50
Identity = 108/159 (67.92%), Postives = 115/159 (72.33%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPRDAIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKMV+T+I+R +YLHYVKKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]

BLAST of MELO3C003352 vs. NCBI nr
Match: gi|590579023|ref|XP_007013672.1| (Ribosomal protein S11-beta [Theobroma cacao])

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-49
Identity = 106/159 (66.67%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPR+AIEG YIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLHY+KKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMMRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGI 159

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BLAST of MELO3C003352 vs. NCBI nr
Match: gi|823238798|ref|XP_012452053.1| (PREDICTED: 40S ribosomal protein S11-like [Gossypium raimondii])

HSP 1 Score: 203.8 bits (517), Expect = 1.9e-49
Identity = 105/159 (66.04%), Postives = 116/159 (72.96%), Query Frame = 1


Query: 1   MAEQMEKAFLEQPKVFLCSKKSGRGKRTGKEGNQFWKSIGLGFKTPRDAIEGIYIDKKCP 60
           MAEQ EKAFL+QPKVFL SKKSG+GKR GK GN+FWKSIGLGFKTPR+A EGIYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREATEGIYIDKKCP 60

Query: 61  FTGTASISGCILAVTCHSAKMVKTVILRHSYLHYVKKYQ--------------------- 120
           FTGT SI G ILA TCHSAKM++T+I+R +YLHY+KKYQ                     
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMIRTIIVRRNYLHYIKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 ---------RPLSKTVMFNVLKVIPVGSSKGGKKAFTGI 130
                    RPLSKTV FNVLKVIP GSS GGKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of MELO3C003352 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS11_SOYBN	9.3e-49	62.89	40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2	[more]
RS11_EUPES	1.6e-48	63.52	40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1	[more]
RS112_ARATH	4.6e-48	62.89	40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2	[more]
RS11_MAIZE	6.1e-48	63.06	40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1	[more]
RS111_ARATH	6.1e-48	63.13	40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1	[more]

BLAST of MELO3C003352 vs. TrEMBL


Match Name	E-value	Identity	Description
W9S011_9ROSA	3.7e-52	78.29	40S ribosomal protein S11 OS=Morus notabilis GN=L484_008524 PE=4 SV=1	[more]
A0A0A0LPP1_CUCSA	3.5e-50	67.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382430 PE=3 SV=1	[more]
A0A061GP47_THECC	1.0e-49	66.67	Ribosomal protein S11-beta OS=Theobroma cacao GN=TCM_038251 PE=3 SV=1	[more]
A0A0D2R2N3_GOSRA	1.3e-49	66.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G056800 PE=3 SV=1	[more]
A0A087GIF5_ARAAL	1.7e-49	67.30	Uncharacterized protein OS=Arabis alpina GN=AALP_AA7G161800 PE=3 SV=1	[more]

BLAST of MELO3C003352 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30800.1	2.6e-49	62.89	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G48930.1	3.4e-49	63.13	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G23740.1	9.9e-49	62.26	ribosomal protein S11-beta	[more]

BLAST of MELO3C003352 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703111471\|ref\|XP_010099867.1\|	5.3e-52	78.29	40S ribosomal protein S11 [Morus notabilis]	[more]
gi\|449441892\|ref\|XP_004138716.1\|	5.0e-50	67.92	PREDICTED: 40S ribosomal protein S11 [Cucumis sativus]	[more]
gi\|659088938\|ref\|XP_008445242.1\|	5.0e-50	67.92	PREDICTED: 40S ribosomal protein S11 [Cucumis melo]	[more]
gi\|590579023\|ref\|XP_007013672.1\|	1.4e-49	66.67	Ribosomal protein S11-beta [Theobroma cacao]	[more]
gi\|823238798\|ref\|XP_012452053.1\|	1.9e-49	66.04	PREDICTED: 40S ribosomal protein S11-like [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000266	Ribosomal_S17/S11
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003352T1	MELO3C003352T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRODOM	PD001295		coord: 71..110 score: 9.
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 2..129 score: 1.5
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 69..100 score: 2.
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 71..115 score: 3.2
None	No IPR available	PANTHER	PTHR10744:SF10	SUBFAMILY NOT NAMED	coord: 2..129 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003352	Silver-seed gourd	carmeB0568
MELO3C003352	Silver-seed gourd	carmeB0702
MELO3C003352	Silver-seed gourd	carmeB0771
MELO3C003352	Cucumber (Chinese Long) v3	cucmeB219
MELO3C003352	Cucumber (Chinese Long) v3	cucmeB222
MELO3C003352	Cucumber (Chinese Long) v3	cucmeB227
MELO3C003352	Watermelon (97103) v2	mewmbB318
MELO3C003352	Watermelon (97103) v2	mewmbB340
MELO3C003352	Watermelon (97103) v2	mewmbB363
MELO3C003352	Wax gourd	mewgoB378
MELO3C003352	Wax gourd	mewgoB400
MELO3C003352	Melon (DHL92) v3.5.1	memeB141
MELO3C003352	Melon (DHL92) v3.5.1	memeB139
MELO3C003352	Cucumber (Gy14) v1	cgymeB432
MELO3C003352	Cucumber (Gy14) v1	cgymeB517
MELO3C003352	Cucumber (Gy14) v1	cgymeB531
MELO3C003352	Cucurbita maxima (Rimu)	cmameB289
MELO3C003352	Cucurbita maxima (Rimu)	cmameB473
MELO3C003352	Cucurbita maxima (Rimu)	cmameB567
MELO3C003352	Cucurbita maxima (Rimu)	cmameB754
MELO3C003352	Cucurbita moschata (Rifu)	cmomeB282
MELO3C003352	Cucurbita moschata (Rifu)	cmomeB463
MELO3C003352	Cucurbita moschata (Rifu)	cmomeB556
MELO3C003352	Cucurbita moschata (Rifu)	cmomeB746
MELO3C003352	Wild cucumber (PI 183967)	cpimeB215
MELO3C003352	Wild cucumber (PI 183967)	cpimeB218
MELO3C003352	Wild cucumber (PI 183967)	cpimeB224
MELO3C003352	Cucumber (Chinese Long) v2	cumeB222
MELO3C003352	Cucumber (Chinese Long) v2	cumeB227
MELO3C003352	Watermelon (Charleston Gray)	mewcgB310
MELO3C003352	Watermelon (Charleston Gray)	mewcgB317
MELO3C003352	Watermelon (97103) v1	mewmB342
MELO3C003352	Watermelon (97103) v1	mewmB347
MELO3C003352	Watermelon (97103) v1	mewmB375
MELO3C003352	Cucurbita pepo (Zucchini)	cpemeB038
MELO3C003352	Cucurbita pepo (Zucchini)	cpemeB689
MELO3C003352	Bottle gourd (USVL1VR-Ls)	lsimeB351
MELO3C003352	Bottle gourd (USVL1VR-Ls)	lsimeB439
MELO3C003352	Cucumber (Gy14) v2	cgybmeB185
MELO3C003352	Cucumber (Gy14) v2	cgybmeB188
MELO3C003352	Cucumber (Gy14) v2	cgybmeB193