MELO3C003346 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003346
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPutative membrane lipoprotein
Locationchr4 : 473147 .. 473742 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGTATCGGCGGAGGAATTCGGTGAGAGAGAGAATTGAAATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTGAGATTTTACTTCTCTTTCTTCCACTTACTTTTCTTGATATTCCTAATCTAATTCATCTTCCTCCATTTTTTTTTTTTTGTCAGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGATTTGGTACCTTATGTCCTTTTCCTCGATACGCTTAGGTAATGATCTTGGATAGGACTGTGTTGGAGAAGTCTATTGTGGATTAATGAACGAGAAATTTCACCTTCTGGAACAAGGAGATCTGTAGTTTTTTATTTGAGGCGTTTTGTGAAGTATCGATTAACTTAGATATTTGGAACCCATATCGATTTTGTACACAGATCAAGGCGTTTTGTGGGTCACTCTTCAATCCTTCCATTTCTTTTTTGTTATTCTCATCAAATTTGCAAATTTTATTTTAGATTTTTT

mRNA sequence

CTCTGTATCGGCGGAGGAATTCGGTGAGAGAGAGAATTGAAATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGATTTGGTACCTTATGTCCTTTTCCTCGATACGCTTAGGTAATGATCTTGGATAGGACTGTGTTGGAGAAGTCTATTGTGGATTAATGAACGAGAAATTTCACCTTCTGGAACAAGGAGATCTGTAGTTTTTTATTTGAGGCGTTTTGTGAAGTATCGATTAACTTAGATATTTGGAACCCATATCGATTTTGTACACAGATCAAGGCGTTTTGTGGGTCACTCTTCAATCCTTCCATTTCTTTTTTGTTATTCTCATCAAATTTGCAAATTTTATTTTAGATTTTTT

Coding sequence (CDS)

ATGGGGAAATCCTTCACTCTGATTCAGACAATTGCGACTGCCGGAGCCTTCTCTGCGATTTCATTCTGGTATGGTTTCATGTTTGGAAGAGAGTCCGCTCGTAAAGACTTGGGAGATTTGATTCAAGATCTACGCCGAGGAGTCTCTAAATCCGATTCTTCTTCTGAAACTCCTCAGTCTTGA

Protein sequence

MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS*
Homology
[Close]
BLAST of MELO3C003346 vs. TrEMBL
Match: A0A0A0LIB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G912310 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-23
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]
BLAST of MELO3C003346 vs. TrEMBL
Match: A0A067LC53_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11890 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.9e-16
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD 53
          M K+FTLIQTIATAG FSA+SFWYGFMFGRESARK+LGDLI+DLRRG S S+
Sbjct: 1  MEKTFTLIQTIATAGVFSAVSFWYGFMFGRESARKELGDLIEDLRRGNSTSN 52

[Close]
BLAST of MELO3C003346 vs. TrEMBL
Match: B9N2U2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08350g PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-15
Identity = 40/60 (66.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MG+SFTL+QT+ TAG FSA+S+WYGFMFGRESARK+LGDLI+DLRRG   S   ++  +S
Sbjct: 1  MGRSFTLVQTVTTAGVFSAVSYWYGFMFGRESARKELGDLIEDLRRGNPNSIEENQLGKS 60

[Close]
BLAST of MELO3C003346 vs. TrEMBL
Match: B9RUR7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0856130 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-15
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          M K+F+L+QT+ATAG FSA+SFWYGFMFGRESARK+LGDLI+DLRRG    +SSS  P S
Sbjct: 1  MQKTFSLLQTVATAGVFSAVSFWYGFMFGRESARKELGDLIEDLRRG----NSSSNPPPS 56

[Close]
BLAST of MELO3C003346 vs. TrEMBL
Match: W9SG20_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023372 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-15
Identity = 43/60 (71.67%), Postives = 49/60 (81.67%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          M KSFTL+ T+ TAGAFSA+SFWYGFMFGRESARK+LGDLI+DLRRG    DS+   P S
Sbjct: 1  MEKSFTLLHTVLTAGAFSAVSFWYGFMFGRESARKELGDLIEDLRRG--NPDSNPPPPHS 58

[Close]
BLAST of MELO3C003346 vs. TAIR10
Match: AT4G17085.1 (AT4G17085.1 Putative membrane lipoprotein)

HSP 1 Score: 83.2 bits (204), Expect = 6.1e-17
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          M KSF+LIQT+A +G FSA+S WYGFMFGRESARK+LG LI++LRRG S SDS   TP S
Sbjct: 1  MQKSFSLIQTVAISGVFSAVSCWYGFMFGRESARKELGGLIEELRRGGSNSDS---TPHS 57

[Close]
BLAST of MELO3C003346 vs. NCBI nr
Match: gi|659131896|ref|XP_008465912.1| (PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 9.8e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS
Sbjct: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60

[Close]
BLAST of MELO3C003346 vs. NCBI nr
Match: gi|778688120|ref|XP_004148372.2| (PREDICTED: uncharacterized protein LOC101212897 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-23
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTLIQT+ATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRG+SK DSSSETP S
Sbjct: 35 MGKSFTLIQTVATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGISKPDSSSETPHS 94

[Close]
BLAST of MELO3C003346 vs. NCBI nr
Match: gi|729343099|ref|XP_010540796.1| (PREDICTED: uncharacterized protein LOC104814457 [Tarenaya hassleriana])

HSP 1 Score: 92.4 bits (228), Expect = 2.9e-16
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSET 58
          M KSF+LIQT+ATAG FSAISFWYGFMFGRESARK+LGDLI+DLRRG S S S S +
Sbjct: 3  MEKSFSLIQTVATAGVFSAISFWYGFMFGRESARKELGDLIEDLRRGGSSSGSPSHS 59

[Close]
BLAST of MELO3C003346 vs. NCBI nr
Match: gi|743864746|ref|XP_011032000.1| (PREDICTED: uncharacterized protein LOC105130960 [Populus euphratica])

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-16
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSDSSSETPQS 60
          MGKSFTL+QT+ TAG FSA+SFWYGFMFGRESARK+LGDLI+DLRRG   S   ++  +S
Sbjct: 1  MGKSFTLVQTVTTAGVFSAVSFWYGFMFGRESARKELGDLIEDLRRGNPNSIEENQLGKS 60

[Close]
BLAST of MELO3C003346 vs. NCBI nr
Match: gi|802540235|ref|XP_012075338.1| (PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas])

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1 

Query: 1  MGKSFTLIQTIATAGAFSAISFWYGFMFGRESARKDLGDLIQDLRRGVSKSD 53
          M K+FTLIQTIATAG FSA+SFWYGFMFGRESARK+LGDLI+DLRRG S S+
Sbjct: 1  MEKTFTLIQTIATAGVFSAVSFWYGFMFGRESARKELGDLIEDLRRGNSTSN 52

The following BLAST results are available for this feature:
BLAST of MELO3C003346 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIB2_CUCSA1.7e-2393.33Uncharacterized protein OS=Cucumis sativus GN=Csa_3G912310 PE=4 SV=1[more]
A0A067LC53_JATCU9.9e-1682.69Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11890 PE=4 SV=1[more]
B9N2U2_POPTR2.9e-1566.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s08350g PE=4 SV=1[more]
B9RUR7_RICCO3.8e-1571.67Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0856130 PE=4 SV=1[more]
W9SG20_9ROSA4.9e-1571.67Uncharacterized protein OS=Morus notabilis GN=L484_023372 PE=4 SV=1[more]
BLAST of MELO3C003346 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G17085.16.1e-1770.00 Putative membrane lipoprotein[more]
BLAST of MELO3C003346 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131896|ref|XP_008465912.1|9.8e-25100.00PREDICTED: uncharacterized protein LOC103503490 [Cucumis melo][more]
gi|778688120|ref|XP_004148372.2|2.4e-2393.33PREDICTED: uncharacterized protein LOC101212897 [Cucumis sativus][more]
gi|729343099|ref|XP_010540796.1|2.9e-1678.95PREDICTED: uncharacterized protein LOC104814457 [Tarenaya hassleriana][more]
gi|743864746|ref|XP_011032000.1|8.4e-1670.00PREDICTED: uncharacterized protein LOC105130960 [Populus euphratica][more]
gi|802540235|ref|XP_012075338.1|1.4e-1582.69PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003346T1MELO3C003346T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38384FAMILY NOT NAMEDcoord: 1..55
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C003346Csa3G912310Cucumber (Chinese Long) v2cumeB222
MELO3C003346Cla016118Watermelon (97103) v1mewmB342
MELO3C003346ClCG09G012550Watermelon (Charleston Gray)mewcgB310
MELO3C003346Cla97C09G175360Watermelon (97103) v2mewmbB363
MELO3C003346Bhi05G000390Wax gourdmewgoB407
MELO3C003346CSPI03G47290Wild cucumber (PI 183967)cpimeB215
MELO3C003346Cucsa.313640Cucumber (Gy14) v1cgymeB517
MELO3C003346CmaCh02G015810Cucurbita maxima (Rimu)cmameB567
MELO3C003346CmoCh19G003920Cucurbita moschata (Rifu)cmomeB463
MELO3C003346Cp4.1LG15g03020Cucurbita pepo (Zucchini)cpemeB233
MELO3C003346CsGy3G044680Cucumber (Gy14) v2cgybmeB185
MELO3C003346CsaV3_3G049700Cucumber (Chinese Long) v3cucmeB219
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003346Silver-seed gourdcarmeB0568
MELO3C003346Silver-seed gourdcarmeB0702
MELO3C003346Silver-seed gourdcarmeB0771
MELO3C003346Cucumber (Chinese Long) v3cucmeB222
MELO3C003346Cucumber (Chinese Long) v3cucmeB227
MELO3C003346Watermelon (97103) v2mewmbB318
MELO3C003346Watermelon (97103) v2mewmbB340
MELO3C003346Wax gourdmewgoB378
MELO3C003346Wax gourdmewgoB400
MELO3C003346Melon (DHL92) v3.5.1memeB141
MELO3C003346Melon (DHL92) v3.5.1memeB139
MELO3C003346Cucumber (Gy14) v1cgymeB432
MELO3C003346Cucumber (Gy14) v1cgymeB531
MELO3C003346Cucurbita maxima (Rimu)cmameB289
MELO3C003346Cucurbita maxima (Rimu)cmameB473
MELO3C003346Cucurbita maxima (Rimu)cmameB754
MELO3C003346Cucurbita moschata (Rifu)cmomeB282
MELO3C003346Cucurbita moschata (Rifu)cmomeB556
MELO3C003346Cucurbita moschata (Rifu)cmomeB746
MELO3C003346Wild cucumber (PI 183967)cpimeB218
MELO3C003346Wild cucumber (PI 183967)cpimeB224
MELO3C003346Cucumber (Chinese Long) v2cumeB227
MELO3C003346Watermelon (Charleston Gray)mewcgB317
MELO3C003346Watermelon (97103) v1mewmB347
MELO3C003346Watermelon (97103) v1mewmB375
MELO3C003346Cucurbita pepo (Zucchini)cpemeB038
MELO3C003346Cucurbita pepo (Zucchini)cpemeB689
MELO3C003346Bottle gourd (USVL1VR-Ls)lsimeB351
MELO3C003346Bottle gourd (USVL1VR-Ls)lsimeB439
MELO3C003346Cucumber (Gy14) v2cgybmeB188
MELO3C003346Cucumber (Gy14) v2cgybmeB193