MELO3C003271.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003271.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 34205960 .. 34206850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGGTAAACTCTTGAGGATAACGTGGTTGCAATGGCTGCATAGAAATGGTGAACAGATCAACGAAGAGTGACCAAGAAGAAACTAGAGGAAGGTCAACAATGATTGCTTGTGAGACCAGAAGTGAAGACTCGAATGAGGAAAAGGTTCTTGCTAAAGAAGCACAAAATGGTTGGCTGAGATGGAGAAAAATGTTGGCAGATCAATGGTTGGGATGGTAAATACCTTGGTAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

mRNA sequence

ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

Coding sequence (CDS)

ATGGTGGAACAACCGTGCACAACAAAGAAGATTAGAAAGCTATTGATCGATCCTCATGCCTTTGCATCAATGTTAGGGAATGAGTCGTGTGAAGGAAACAAGGAAGACGAAGAATCAAAAGAAACTCTAACATTGGTCAAAGAAATGCCTAAAATAGAGACAGATATTGTTGGACACAATCGAAGCAAGTTTTCAAAGATAAATCAGAACAAGACAAAAGAAGGCAAGAAAAATCAGAGAAGGGTCGAGGATAGAGAAAAATATCATAGCAAAGGCATTTGGAGAGAGATCAATTGGAGAGTGATCGAGATCTTATCAAATTTAAATGGCCAAGGAGATGAGCATGTTCGCACAATGAAAAAGGAACACGAGCATGAGTGGAGGAAGAAAGTTGGAAAGACATACCTAATACCAACGGAGATACATAAAAACAAGAGGAAGAGGAAACCAAGAAAACTAGCATGGTCAAAGATTGAATCATTGTTGACTACGCGGAAAGGAGTTAACGAGAGGTTGATGAGAGTGGAAACGCTGGTTATGGTAGTCGCAGCCGAGTTACAGTGGTCGAAGGTACTAGAAATGGCAGAAGAAGTCGAGCTATGGTTGTCAGAGAAGAAGGCTAGGGGAAAAGGTGAATTGCATGAAAGGATGGGAACACATTAG

Protein sequence

MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHNRSKFSKINQNKTKEGKKNQRRVEDREKYHSKGIWREINWRVIEILSNLNGQGDEHVRTMKKEHEHEWRKKVGKTYLIPTEIHKNKRKRKPRKLAWSKIESLLTTRKGVNERLMRVETLVMVVAAELQWSKVLEMAEEVELWLSEKKARGKGELHERMGTH

Homology

[Close]

BLAST of MELO3C003271.2 vs. NCBI nr
Match: KGN52728.1 (hypothetical protein Csa_5G652820 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-05
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD    N
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD---QN 60

Query: 61 RSKFSK 67
          ++K SK
Sbjct: 61 KTKESK 63

[Close]

BLAST of MELO3C003271.2 vs. TrEMBL
Match: tr|A0A0A0KT09|A0A0A0KT09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652820 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.3e-06
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MVEQPCTTKKIRKLLIDPHAFASMLGNESCEGNKEDEESKETLTLVKEMPKIETDIVGHN 60
          M EQ  TT +IR LLI  HAF S+L +ES E  K+DEE  ET  LVKE+ KIETD    N
Sbjct: 1  MEEQHFTTNEIRHLLIGHHAFGSLLVDESSEVKKDDEELGETPMLVKEVWKIETD---QN 60

Query: 61 RSKFSK 67
          ++K SK
Sbjct: 61 KTKESK 63

The following BLAST results are available for this feature:

BLAST of MELO3C003271.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52728.1	1.1e-05	56.06	hypothetical protein Csa_5G652820 [Cucumis sativus]	[more]

BLAST of MELO3C003271.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C003271.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C003271.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KT09\|A0A0A0KT09_CUCSA	7.3e-06	56.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652820 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003271.2.1	MELO3C003271.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C003271.2	CsGy4G018400	Cucumber (Gy14) v2	cgybmedB282

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003271.2	Cucumber (Gy14) v1	cgymedB295
MELO3C003271.2	Cucurbita maxima (Rimu)	cmamedB699
MELO3C003271.2	Cucurbita maxima (Rimu)	cmamedB910
MELO3C003271.2	Cucurbita moschata (Rifu)	cmomedB698
MELO3C003271.2	Cucurbita moschata (Rifu)	cmomedB900
MELO3C003271.2	Cucurbita pepo (Zucchini)	cpemedB084
MELO3C003271.2	Cucurbita pepo (Zucchini)	cpemedB535
MELO3C003271.2	Wild cucumber (PI 183967)	cpimedB316
MELO3C003271.2	Cucumber (Chinese Long) v2	cumedB314
MELO3C003271.2	Bottle gourd (USVL1VR-Ls)	lsimedB160
MELO3C003271.2	Watermelon (Charleston Gray)	medwcgB531
MELO3C003271.2	Silver-seed gourd	carmedB0483
MELO3C003271.2	Silver-seed gourd	carmedB0527
MELO3C003271.2	Cucumber (Chinese Long) v3	cucmedB323
MELO3C003271.2	Watermelon (97103) v2	medwmbB537