MELO3C003264 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003264
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	GTPase Der
Location	chr8 : 31756591 .. 31757489 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATGGCATAATCGCAGAAGATTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAAAAATTGTATAGTTGTTTTTAGTGAAAATTTATTTTCAATGATTTCTAATTCATTTTAATATTTTACAGAGATCGAACAATACTAGACTTCGGAATATTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATTTCAACTTCAACGACACAGACACATTCAACTTCAACGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAATGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAACTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCATCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAAAGAGTTCAAATTCGACGACGACAACTAGCTAAAAATCGTCAACGTCCAGGTTGTGGAACACATTGA

mRNA sequence

ATGCGATGGCATAATCGCAGAAGATTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGAGATCGAACAATACTAGACTTCGGAATATTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATTTCAACTTCAACGACACAGACACATTCAACTTCAACGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAATGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAACTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCATCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAAAGAGTTCAAATTCGACGACGACAACTAGCTAAAAATCGTCAACGTCCAGGTTGTGGAACACATTGA

Coding sequence (CDS)

ATGCGATGGCATAATCGCAGAAGATTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGAGATCGAACAATACTAGACTTCGGAATATTGCAGATGATCCACAACAGGTTCTAAATATATGCAACGATAACGAGCAGTACATGGAGAACATCCACTATATGTACGATGTCCCTATTGTACCTGCTCCAGTTCAGAGGAGACGTCCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGGGGAAGAAGTGCCTCCCATTTCAACTTCAACGACACAGACACATTCAACTTCAACGACACAAAGCGAGCATAATTACGTTAGTCCAGTAATGATGATGCCAACATTTGGAATGACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAAGAGGATATTACAACTCAGAGGCAGGTCAATCATCAACGGACTTTGGGCAACAATACTATGATTTAGGGAGTGATCCATCATCTTCATACATGCATGGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACAAAGTGCCTGCAGCGGTACCCGAGCAATCAGATGAGCAACAGCAACAAGAGAATGCAGCAGTACCCGAGCAATCAGATGAGCAACAACAACAAGAGAATCATGAGGAAATACAACAACAAAGAGTTCAAATTCGACGACGACAACTAGCTAAAAATCGTCAACGTCCAGGTTGTGGAACACATTGA

Protein sequence

MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPISTSTTQTHSTSTTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQQQENHEEIQQQRVQIRRRQLAKNRQRPGCGTH*

Homology

[Close]

BLAST of MELO3C003264 vs. NCBI nr
Match: gi|659069376|ref|XP_008449513.1| (PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo])

HSP 1 Score: 540.4 bits (1391), Expect = 1.8e-150
Identity = 262/272 (96.32%), Postives = 263/272 (96.69%), Query Frame = 1


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA
Sbjct: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPIS 120
           DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPP+ 
Sbjct: 61  DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPM- 120

Query: 121 TSTTQTHSTSTTQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFG 180
              TQT     TQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFG
Sbjct: 121 ---TQTQ----TQSEHNYVSPVMMMPTFGMTYYDSGVGQSSDFGRGYYNSEAGQSSTDFG 180

Query: 181 QQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQ 240
           QQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQ
Sbjct: 181 QQYYDLGSDPSSSYMHGHGRGRGEHNEYLYYKVPAAVPEQSDEQQQQENAAVPEQSDEQQ 240

Query: 241 QQENHEEIQQQRVQIRRRQLAKNRQRPGCGTH 273
           QQENHEEIQQQRVQIRRRQLAKNRQRPGCGTH
Sbjct: 241 QQENHEEIQQQRVQIRRRQLAKNRQRPGCGTH 264

[Close]

BLAST of MELO3C003264 vs. NCBI nr
Match: gi|659126257|ref|XP_008463092.1| (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 156.0 bits (393), Expect = 9.5e-35
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1


Query: 1   MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60
           MRWHNRRRFTATGPPIEQFDMDVTQEYI+WYKNISKLYITQPGAAMSHLRSNN RLRN+A
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLNICNDNE 75
           DDPQQVLNICNDNE
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]

BLAST of MELO3C003264 vs. NCBI nr
Match: gi|659123452|ref|XP_008461671.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 9.8e-24
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 50  RSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEV 109
           RS N RL+N+ADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQES+QLEEV
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 214

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 215 VQHVEEVP 222

[Close]

BLAST of MELO3C003264 vs. NCBI nr
Match: gi|659123450|ref|XP_008461670.1| (PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 9.8e-24
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1


Query: 50  RSNNTRLRNIADDPQQVLNICNDNEQYMENIHYMYDVPIVPAPVQRRRPLVQESDQLEEV 109
           RS N RL+N+ADDPQQVLNICNDNEQYMENIHYMY+V IVPA VQRRRPLVQES+QLEEV
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALVQRRRPLVQESNQLEEV 221

Query: 110 DQHGEEVP 118
            QH EEVP
Sbjct: 222 VQHVEEVP 229

[Close]

BLAST of MELO3C003264 vs. NCBI nr
Match: gi|778688386|ref|XP_011652738.1| (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 7.3e-19
Identity = 54/81 (66.67%), Postives = 60/81 (74.07%), Query Frame = 1


Query: 102 ESDQLEEVDQHGEEVPPISTSTTQTHSTSTTQSEHNYVSPVMMMPTFGMTYYDSGVGQSS 161
           +SDQLEEVDQ+ EEV P++           TQSEH YVS VMMMPTFG TYYD GVGQSS
Sbjct: 167 KSDQLEEVDQNVEEVAPVTQ----------TQSEHGYVSLVMMMPTFGTTYYDYGVGQSS 226

Query: 162 DFGRGYYNSEAGQSSTDFGQQ 183
           DF   YYNSEAG SS++FGQQ
Sbjct: 227 DFRTWYYNSEAGSSSSNFGQQ 237

The following BLAST results are available for this feature:

BLAST of MELO3C003264 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069376\|ref\|XP_008449513.1\|	1.8e-150	96.32	PREDICTED: GATA zinc finger domain-containing protein 10-like [Cucumis melo]	[more]
gi\|659126257\|ref\|XP_008463092.1\|	9.5e-35	95.95	PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel...	[more]
gi\|659123452\|ref\|XP_008461671.1\|	9.8e-24	85.29	PREDICTED: CASP-like protein RCOM_0464280 isoform X2 [Cucumis melo]	[more]
gi\|659123450\|ref\|XP_008461670.1\|	9.8e-24	85.29	PREDICTED: CASP-like protein RCOM_0464280 isoform X1 [Cucumis melo]	[more]
gi\|778688386\|ref\|XP_011652738.1\|	7.3e-19	66.67	PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003264T1	MELO3C003264T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 238..258 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003264	Cucurbita pepo (Zucchini)	cpemeB066
MELO3C003264	Cucurbita pepo (Zucchini)	cpemeB453
MELO3C003264	Bottle gourd (USVL1VR-Ls)	lsimeB153
MELO3C003264	Cucumber (Gy14) v2	cgybmeB281
MELO3C003264	Silver-seed gourd	carmeB0480
MELO3C003264	Silver-seed gourd	carmeB0521
MELO3C003264	Cucumber (Chinese Long) v3	cucmeB329
MELO3C003264	Watermelon (97103) v2	mewmbB543
MELO3C003264	Cucumber (Gy14) v1	cgymeB303
MELO3C003264	Cucurbita maxima (Rimu)	cmameB616
MELO3C003264	Cucurbita maxima (Rimu)	cmameB812
MELO3C003264	Cucurbita moschata (Rifu)	cmomeB611
MELO3C003264	Cucurbita moschata (Rifu)	cmomeB796
MELO3C003264	Wild cucumber (PI 183967)	cpimeB325
MELO3C003264	Cucumber (Chinese Long) v2	cumeB328
MELO3C003264	Watermelon (Charleston Gray)	mewcgB535