MELO3C003254.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003254.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 33791640 .. 33791915 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGATTCCCAGAAAGAGACGTTGGAGTGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGCATGGAGGTGACAGGGGAGGAGAGAGGAGGAGTGGAGCAGACGAGGAGGCCAGAGTTGTTGGAGAGAGTGAGAAGGCTGGAAGTGGAAATGGGTTTGTTTGGATTAGCAGAACAAATAAGGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAAAGGGAAGTATGGGAATTGGAATTAGTGATGGGGGCAGTGAAAAGGTTGTTTAG

mRNA sequence

ATGAAAGGATTCCCAGAAAGAGACGTTGGAGTGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGCATGGAGGTGACAGGGGAGGAGAGAGGAGGAGTGGAGCAGACGAGGAGGCCAGAGTTGTTGGAGAGAGTGAGAAGGCTGGAAGTGGAAATGGGTTTGTTTGGATTAGCAGAACAAATAAGGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAAAGGGAAGTATGGGAATTGGAATTAGTGATGGGGGCAGTGAAAAGGTTGTTTAG

Coding sequence (CDS)

ATGAAAGGATTCCCAGAAAGAGACGTTGGAGTGGTCGAGGAGGAGGAGGTTGCCGGAGTCGAGGAGCATGGAGGTGACAGGGGAGGAGAGAGGAGGAGTGGAGCAGACGAGGAGGCCAGAGTTGTTGGAGAGAGTGAGAAGGCTGGAAGTGGAAATGGGTTTGTTTGGATTAGCAGAACAAATAAGGGAGTTGGATTGGACATGGATGATGAGGAAGTAGTAAAGGGAAGTATGGGAATTGGAATTAGTGATGGGGGCAGTGAAAAGGTTGTTTAG

Protein sequence

MKGFPERDVGVVEEEEVAGVEEHGGDRGGERRSGADEEARVVGESEKAGSGNGFVWISRTNKGVGLDMDDEEVVKGSMGIGISDGGSEKVV

Homology

[Close]

BLAST of MELO3C003254.2 vs. NCBI nr
Match: KGN54484.1 (hypothetical protein Csa_4G337900 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 85/99 (85.86%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MKGFPERDVGVVEEEEVAGV-EEHGGDRGGERRSGADEEARVV-------GESEKAGSGN 60
          MKGFPERDVGVVEEEEVAGV EEHGGDRGGERRSG DEEARVV         SEKAGSGN
Sbjct: 1  MKGFPERDVGVVEEEEVAGVKEEHGGDRGGERRSGPDEEARVVXXXXXXXXXSEKAGSGN 60

Query: 61 GFVWISRTNKGVGLDMDDEEVVKGSMGIGISDGGSEKVV 92
          GFVWISR N GVGLDMDDEE VKGSMGIGISDGGSEKVV
Sbjct: 61 GFVWISRPNNGVGLDMDDEEEVKGSMGIGISDGGSEKVV 99

[Close]

BLAST of MELO3C003254.2 vs. TrEMBL
Match: tr|A0A0A0L0A1|A0A0A0L0A1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 85/99 (85.86%), Postives = 85/99 (85.86%), Query Frame = 0


Query: 1  MKGFPERDVGVVEEEEVAGV-EEHGGDRGGERRSGADEEARVV-------GESEKAGSGN 60
          MKGFPERDVGVVEEEEVAGV EEHGGDRGGERRSG DEEARVV         SEKAGSGN
Sbjct: 1  MKGFPERDVGVVEEEEVAGVKEEHGGDRGGERRSGPDEEARVVXXXXXXXXXSEKAGSGN 60

Query: 61 GFVWISRTNKGVGLDMDDEEVVKGSMGIGISDGGSEKVV 92
          GFVWISR N GVGLDMDDEE VKGSMGIGISDGGSEKVV
Sbjct: 61 GFVWISRPNNGVGLDMDDEEEVKGSMGIGISDGGSEKVV 99

The following BLAST results are available for this feature:

BLAST of MELO3C003254.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54484.1	1.5e-33	85.86	hypothetical protein Csa_4G337900 [Cucumis sativus]	[more]

BLAST of MELO3C003254.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C003254.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C003254.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L0A1\|A0A0A0L0A1_CUCSA	1.0e-33	85.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G337900 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003254.2.1	MELO3C003254.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003254.2	Bottle gourd (USVL1VR-Ls)	lsimedB160
MELO3C003254.2	Watermelon (Charleston Gray)	medwcgB531
MELO3C003254.2	Watermelon (97103) v2	medwmbB537