MELO3C003253 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003253
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	RNA-binding KH domain protein
Location	chr8 : 31521115 .. 31521384 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCACCAATATTCTCCTACACTTGAAGCTTCATTACTCTTGCAACCAAGATGCAGTGAGAAAGTACAAAGAGATTTTGGGATTATTTCATTCATAACCCGTCTGCTTGTGTCTACCTTACAAATTAGTTGCTTAATTGGTAAAAATGGAGCTATCATTACCAAGTTGAGAAGGCTCACCAAGGCTAATATTCGAATATTGTCAAAGGAAAATCTCCCTAAGGTTGCCTTGGAAGATGATGAAATGGTACAGGTGATTGTTAATTAA

mRNA sequence

ATGTCGCACCAATATTCTCCTACACTTGAAGCTTCATTACTCTTGCAACCAAGATGCAGTGAGAAAGTACAAAGAGATTTTGGGATTATTTCATTCATAACCCGTCTGCTTGTGTCTACCTTACAAATTAGTTGCTTAATTGGTAAAAATGGAGCTATCATTACCAAGTTGAGAAGGCTCACCAAGGCTAATATTCGAATATTGTCAAAGGAAAATCTCCCTAAGGTTGCCTTGGAAGATGATGAAATGGTACAGGTGATTGTTAATTAA

Coding sequence (CDS)

ATGTCGCACCAATATTCTCCTACACTTGAAGCTTCATTACTCTTGCAACCAAGATGCAGTGAGAAAGTACAAAGAGATTTTGGGATTATTTCATTCATAACCCGTCTGCTTGTGTCTACCTTACAAATTAGTTGCTTAATTGGTAAAAATGGAGCTATCATTACCAAGTTGAGAAGGCTCACCAAGGCTAATATTCGAATATTGTCAAAGGAAAATCTCCCTAAGGTTGCCTTGGAAGATGATGAAATGGTACAGGTGATTGTTAATTAA

Protein sequence

MSHQYSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQVIVN*

Homology

[Close]

BLAST of MELO3C003253 vs. Swiss-Prot
Match: HEN4_ARATH (KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 4   QYSPTLEASLLLQPRCSE----KVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRR 63
           Q SP  +A +L+  R  E    K+  +    S   RL+V T QI C++GK G I++++R+
Sbjct: 510 QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569

Query: 64  LTKANIRILSKENLPKVALEDDEMVQV 87
            T A I+IL  E  PK   E+D++VQ+
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQI 596

[Close]

BLAST of MELO3C003253 vs. TrEMBL
Match: A0A0A0KVM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.0e-29
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKAN
Sbjct: 402 YSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKAN 461

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRILSKENLPKVALEDDEMVQ+
Sbjct: 462 IRILSKENLPKVALEDDEMVQI 483

[Close]

BLAST of MELO3C003253 vs. TrEMBL
Match: A0A0A0KVM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           RLLV + QI C+IGK G I+  +R  T A +RIL  ++LP+ AL  DE+VQ+
Sbjct: 203 RLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQI 254

HSP 2 Score: 34.7 bits (78), Expect = 7.3e+01
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           + D     F  RL+  T  I  +IGK GAII ++R+ TKA I++
Sbjct: 335 REDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 378

HSP 3 Score: 130.2 bits (326), Expect = 1.3e-27
Identity = 63/82 (76.83%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           +SPT+EA++ LQPRCSEKV+RD GIISF TRLLVST +I CLIGK G+IIT++RRLTKAN
Sbjct: 340 FSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVSTSRIGCLIGKGGSIITEMRRLTKAN 399

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRI+SKENLPK+A EDDEMVQ+
Sbjct: 400 IRIISKENLPKIASEDDEMVQI 421

[Close]

BLAST of MELO3C003253 vs. TrEMBL
Match: A0A151TBB2_CAJCA (KH domain-containing protein At4g18375 family OS=Cajanus cajan GN=KK1_018932 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.1e-05
Identity = 31/66 (46.97%), Postives = 39/66 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEM 83
           Q D G      +LLV + QI C+IGK G I+  +R  T A IRIL  E+LP  AL  DE+
Sbjct: 129 QDDDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPLCALSSDEL 188

Query: 84  VQVIVN 90
           VQ+  N
Sbjct: 189 VQITGN 194

HSP 2 Score: 129.8 bits (325), Expect = 1.7e-27
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           +SPT+EA++ LQPRCSEKV+RD GIISF TRLLVST +I CLIGK G+IIT++RRLTKAN
Sbjct: 342 FSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVSTSRIGCLIGKGGSIITEMRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IR++SKENLPK+A EDDEMVQ+
Sbjct: 402 IRVISKENLPKIASEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. TrEMBL
Match: V7BZ92_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G030100g PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-04
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEM 83
           Q D G      +LLV + QI C+IGK G I+  +R  T A IRIL  ++LP  AL  DE+
Sbjct: 131 QDDDGGQQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDDHLPLCALSSDEL 190

Query: 84  VQV 87
           VQ+
Sbjct: 191 VQI 193

HSP 2 Score: 129.0 bits (323), Expect = 2.8e-27
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           +SPT+EA++ LQPRCSEKV+RD GIISF TRLLVST +I CLIGK G+IIT++RRLTKAN
Sbjct: 342 FSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVSTSRIGCLIGKGGSIITEMRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRI+SK+NLPK+A EDDEMVQ+
Sbjct: 402 IRIISKDNLPKIASEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. TrEMBL
Match: A0A0L9VNU5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g251500 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-04
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEM 83
           Q D G      +LLV + QI C+IGK G I+  +R  T A IRIL  ++LP  AL  DE+
Sbjct: 131 QDDDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDDHLPLCALSSDEL 190

Query: 84  VQV 87
           VQ+
Sbjct: 191 VQI 193

HSP 2 Score: 129.0 bits (323), Expect = 2.8e-27
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           +SPT+EA++ LQPRCSEKV+RD GIISF TRLLVST +I CLIGK G+IIT++RRLTKAN
Sbjct: 342 FSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVSTSRIGCLIGKGGSIITEMRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRI+SK+NLPK+A EDDEMVQ+
Sbjct: 402 IRIISKDNLPKIASEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. TAIR10
Match: AT5G15270.2 (AT5G15270.2 RNA-binding KH domain-containing protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.0e-28
Identity = 56/82 (68.29%), Postives = 70/82 (85.37%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPT+EA + LQP+CS+KV+RD G++SF TRLLV + +I C++GK GAIIT++RR+TKAN
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKAN 402

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRIL KENLPKVA +DDEMVQ+
Sbjct: 403 IRILGKENLPKVASDDDEMVQI 424

HSP 2 Score: 50.1 bits (118), Expect = 8.5e-07
Identity = 22/52 (42.31%), Postives = 33/52 (63.46%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           +LLV + QI C++G+ G I+  +R  T A IRI+   N+P  AL  DE++Q+
Sbjct: 150 KLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQI 201

HSP 3 Score: 32.7 bits (73), Expect = 1.4e-01
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 1


Query: 32  FITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           F  RL+     I+ +IGK GA+I +LR+ T+A I++
Sbjct: 284 FFIRLVSPVENIASVIGKGGALINQLRQETRATIKV 319

[Close]

BLAST of MELO3C003253 vs. TAIR10
Match: AT1G14170.3 (AT1G14170.3 RNA-binding KH domain-containing protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 47/81 (58.02%), Postives = 63/81 (77.78%), Query Frame = 1


Query: 6   SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANI 65
           SP + A++ LQ RCSEKV +D   ++  TRLLVS+ QI CLIGK GA+I+++R +T+ANI
Sbjct: 328 SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANI 387

Query: 66  RILSKENLPKVALEDDEMVQV 87
           RIL KE++PK+A ED+EMVQ+
Sbjct: 388 RILQKEDVPKIAREDEEMVQI 408

HSP 2 Score: 43.9 bits (102), Expect = 6.1e-05
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVA--LEDDEMVQVI 88
           R+LV + QI C+IGK G +I  LR  T A IR++ K++LP  A  L  DE++ +I
Sbjct: 149 RMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVI-KDHLPACALTLSHDELLLII 202

[Close]

BLAST of MELO3C003253 vs. TAIR10
Match: AT5G46190.1 (AT5G46190.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 9.1e-09
Identity = 32/81 (39.51%), Postives = 51/81 (62.96%), Query Frame = 1


Query: 6   SPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANI 65
           S  +EA LLLQ + +++ +    +     +LLVS+  I C+IGK+G+II+++R+ TKA+I
Sbjct: 378 SMAVEAVLLLQEKINDEDEDKVKM-----QLLVSSKVIGCIIGKSGSIISEIRKRTKADI 437

Query: 66  RILSKENLPKVALEDDEMVQV 87
            I    N PK A  +DE+V++
Sbjct: 438 HISKGNNTPKCADPNDELVEI 453

[Close]

BLAST of MELO3C003253 vs. TAIR10
Match: AT5G64390.3 (AT5G64390.3 RNA-binding KH domain-containing protein)

HSP 1 Score: 55.8 bits (133), Expect = 1.6e-08
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 4   QYSPTLEASLLLQPRCSE----KVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRR 63
           Q SP  +A +L+  R  E    K+  +    S   RL+V T QI C++GK G I++++R+
Sbjct: 510 QSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569

Query: 64  LTKANIRILSKENLPKVALEDDEMVQV 87
            T A I+IL  E  PK   E+D++VQ+
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQI 596

[Close]

BLAST of MELO3C003253 vs. TAIR10
Match: AT5G53060.1 (AT5G53060.1 RNA-binding KH domain-containing protein)

HSP 1 Score: 53.9 bits (128), Expect = 5.9e-08
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1


Query: 33  ITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKE-NLPKVALEDDEMVQVI 88
           +TRL+VS + + CL+GK G II ++R  TK +IRIL +E NLP+     +E+VQ++
Sbjct: 177 VTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIV 232

HSP 2 Score: 44.3 bits (103), Expect = 4.7e-05
Identity = 26/82 (31.71%), Postives = 48/82 (58.54%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           + P  EA L +Q +  + +     +I+  TRLLV +    CL GK G++ +++ RLT  +
Sbjct: 384 FFPAQEALLHIQTQIIDLIPDKDNLIT--TRLLVPSRDSICLEGKAGSV-SEISRLTGTS 443

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           ++IL++E +P+ A  +D ++Q+
Sbjct: 444 VQILAREEIPRCASINDVVIQI 462

[Close]

BLAST of MELO3C003253 vs. NCBI nr
Match: gi|778707291|ref|XP_011655997.1| (PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKAN
Sbjct: 342 YSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRILSKENLPKVALEDDEMVQ+
Sbjct: 402 IRILSKENLPKVALEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. NCBI nr
Match: gi|778707291|ref|XP_011655997.1| (PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           RLLV + QI C+IGK G I+  +R  T A +RIL  ++LP+ AL  DE+VQ+
Sbjct: 143 RLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQI 194

HSP 2 Score: 34.7 bits (78), Expect = 1.0e+02
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           + D     F  RL+  T  I  +IGK GAII ++R+ TKA I++
Sbjct: 275 REDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 318

HSP 3 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKAN
Sbjct: 402 YSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKAN 461

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRILSKENLPKVALEDDEMVQ+
Sbjct: 462 IRILSKENLPKVALEDDEMVQI 483

[Close]

BLAST of MELO3C003253 vs. NCBI nr
Match: gi|700197295|gb|KGN52472.1| (hypothetical protein Csa_5G636640 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           RLLV + QI C+IGK G I+  +R  T A +RIL  ++LP+ AL  DE+VQ+
Sbjct: 203 RLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQI 254

HSP 2 Score: 34.7 bits (78), Expect = 1.0e+02
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           + D     F  RL+  T  I  +IGK GAII ++R+ TKA I++
Sbjct: 335 REDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 378

HSP 3 Score: 137.1 bits (344), Expect = 1.5e-29
Identity = 70/82 (85.37%), Postives = 75/82 (91.46%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKAN
Sbjct: 342 YSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRILSKENLPKVALEDDEMVQ+
Sbjct: 402 IRILSKENLPKVALEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. NCBI nr
Match: gi|659118830|ref|XP_008459329.1| (PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           RLLV + QI C+IGK G I+  +R  T A +RIL  ++LP+ AL  DE+VQ+
Sbjct: 143 RLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQI 194

HSP 2 Score: 34.7 bits (78), Expect = 1.0e+02
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           + D     F  RL+  T  I  +IGK GAII ++R+ TKA I++
Sbjct: 275 REDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 318

HSP 3 Score: 134.4 bits (337), Expect = 9.7e-29
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPTLEA+L LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT+LRRLTKAN
Sbjct: 342 YSPTLEAALRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKAN 401

Query: 65  IRILSKENLPKVALEDDEMVQV 87
           IRILSKEN PKVALEDDEMVQ+
Sbjct: 402 IRILSKENPPKVALEDDEMVQI 423

[Close]

BLAST of MELO3C003253 vs. NCBI nr
Match: gi|659118832|ref|XP_008459330.1| (PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 5.7e-05
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 35  RLLVSTLQISCLIGKNGAIITKLRRLTKANIRILSKENLPKVALEDDEMVQV 87
           RLLV + QI C+IGK G I+  +R  T A +RIL  ++LP+ AL  DE+VQ+
Sbjct: 143 RLLVPSDQIGCIIGKGGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQI 194

HSP 2 Score: 34.7 bits (78), Expect = 1.0e+02
Identity = 18/44 (40.91%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 24  QRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKANIRI 68
           + D     F  RL+  T  I  +IGK GAII ++R+ TKA I++
Sbjct: 275 REDLSSKEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKV 318

HSP 3 Score: 131.3 bits (329), Expect = 8.2e-28
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 5   YSPTLEASLLLQPRCSEKVQRDFGIISFITRLLVSTLQISCLIGKNGAIITKLRRLTKAN 64
           YSPT+EA++ LQPRCSEKV+RD GIISF TRLLV T +I CLIGK GAIIT++RRLTKAN
Sbjct: 355 YSPTIEAAVRLQPRCSEKVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITEMRRLTKAN 414

Query: 65  IRILSKENLPKVALEDDEMVQVI 88
           IRILSK+NLPK+A EDDEMVQV+
Sbjct: 415 IRILSKDNLPKIASEDDEMVQVM 437

The following BLAST results are available for this feature:

BLAST of MELO3C003253 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HEN4_ARATH	2.8e-07	37.93	KH domain-containing protein HEN4 OS=Arabidopsis thaliana GN=HEN4 PE=1 SV=1	[more]

BLAST of MELO3C003253 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVM1_CUCSA	1.0e-29	85.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1	[more]
A0A0A0KVM1_CUCSA	4.0e-05	50.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G636640 PE=4 SV=1	[more]
A0A151TBB2_CAJCA	3.1e-05	46.97	KH domain-containing protein At4g18375 family OS=Cajanus cajan GN=KK1_018932 PE=...	[more]
V7BZ92_PHAVU	1.2e-04	46.03	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G030100g PE=4 SV=1	[more]
A0A0L9VNU5_PHAAN	1.2e-04	46.03	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g251500 PE=4 SV=1	[more]

BLAST of MELO3C003253 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15270.2	3.0e-28	68.29	RNA-binding KH domain-containing protein	[more]
AT1G14170.3	1.6e-21	58.02	RNA-binding KH domain-containing protein	[more]
AT5G46190.1	9.1e-09	39.51	RNA-binding KH domain-containing protein	[more]
AT5G64390.3	1.6e-08	37.93	RNA-binding KH domain-containing protein	[more]
AT5G53060.1	5.9e-08	46.43	RNA-binding KH domain-containing protein	[more]

BLAST of MELO3C003253 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778707291\|ref\|XP_011655997.1\|	1.5e-29	85.37	PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus]	[more]
gi\|778707291\|ref\|XP_011655997.1\|	5.7e-05	50.00	PREDICTED: KH domain-containing protein At4g18375 [Cucumis sativus]	[more]
gi\|700197295\|gb\|KGN52472.1\|	5.7e-05	50.00	hypothetical protein Csa_5G636640 [Cucumis sativus]	[more]
gi\|659118830\|ref\|XP_008459329.1\|	5.7e-05	50.00	PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Cucumis melo]	[more]
gi\|659118832\|ref\|XP_008459330.1\|	5.7e-05	50.00	PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004088	KH_dom_type_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003253T1	MELO3C003253T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	GENE3D	G3DSA:3.30.1370.10		coord: 34..85 score: 5.4
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 34..84 score: 1.
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 31..89 score: 10
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 32..75 score: 8.5
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 1..86 score: 3.4
None	No IPR available	PANTHER	PTHR10288:SF151	SUBFAMILY NOT NAMED	coord: 1..86 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003253	Watermelon (97103) v2	mewmbB543
MELO3C003253	Watermelon (Charleston Gray)	mewcgB535
MELO3C003253	Bottle gourd (USVL1VR-Ls)	lsimeB153