MELO3C003234 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003234
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon protein, Ty3-gypsy subclass, putative
Location	chr8 : 31231915 .. 31232412 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGATACAAAACAACATGTTGAGCAATGTGCTGTATGTCAGAAAAATAAGAGTGATGCCATGAGCTCAGCCGGGTTACTTCATCAACCCTTTCCAATTCTGGAGCAGGTGTTGGACGATATATTGATGGACTTAATTGAAGGGCTCCCAAAATCCGGCGAGATAGACTCCATTTTGGTGGTGGTGGATAGACTCAGCAAATATGGGCATTTTTTGGGCTTAAAACATCCTTACACAGCCAAAACAGTGGCAGAAAAATACATCAAGGGAGTTGTTAAGCTCTGCGGGTTCCCACGATCCATTGTCTCAGATAGGGACAAGATTTTCCTAAGCCACTTCTGGACCAAACTATTCTGCTCACAAGGGGGACCACACTCCGAAGAAGCACTGTGGACCACCCTCAAACAGATGGACAGGTGGAGATTGTTAACAAGGAAATTGAAACATACCTATGTAAGCAACAGTGAGAGACCGAAACAATGGGCTTCATGA

mRNA sequence

ATGAAAGCTGATACAAAACAACATGTTGAGCAATGTGCTGTATGTCAGAAAAATAAGAGTGATGCCATGAGCTCAGCCGGGTTACTTCATCAACCCTTTCCAATTCTGGAGCAGGTGTTGGACGATATATTGATGGACTTAATTGAAGGGCTCCCAAAATCCGGCGAGATAGACTCCATTTTGGTGGTGGTGGATAGACTCAGCAAATATGGGCATTTTTTGGGCTTAAAACATCCTTACACAGCCAAAACAGTGGCAGAAAAATACATCAAGGGAGTTGTTAAGCTCTGCGGGTTCCCACGATCCATTGTCTCAGATAGGGACAAGATTTTCCTAAGCCACTTCTGGACCAAACTATTCTGCTCACAAGGGGGACCACACTCCGAAGAAGCACTGTGGACCACCCTCAAACAGATGGACAGGTGGAGATTGTTAACAAGGAAATTGAAACATACCTATGTAAGCAACAGTGAGAGACCGAAACAATGGGCTTCATGA

Coding sequence (CDS)

ATGAAAGCTGATACAAAACAACATGTTGAGCAATGTGCTGTATGTCAGAAAAATAAGAGTGATGCCATGAGCTCAGCCGGGTTACTTCATCAACCCTTTCCAATTCTGGAGCAGGTGTTGGACGATATATTGATGGACTTAATTGAAGGGCTCCCAAAATCCGGCGAGATAGACTCCATTTTGGTGGTGGTGGATAGACTCAGCAAATATGGGCATTTTTTGGGCTTAAAACATCCTTACACAGCCAAAACAGTGGCAGAAAAATACATCAAGGGAGTTGTTAAGCTCTGCGGGTTCCCACGATCCATTGTCTCAGATAGGGACAAGATTTTCCTAAGCCACTTCTGGACCAAACTATTCTGCTCACAAGGGGGACCACACTCCGAAGAAGCACTGTGGACCACCCTCAAACAGATGGACAGGTGGAGATTGTTAACAAGGAAATTGAAACATACCTATGTAAGCAACAGTGAGAGACCGAAACAATGGGCTTCATGA

Protein sequence

MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSILVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLFCSQGGPHSEEALWTTLKQMDRWRLLTRKLKHTYVSNSERPKQWAS*

Homology

[Close]

BLAST of MELO3C003234 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1


Query: 7    QHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPK-SGEIDSILVVVD 66
            Q++  C  CQ  KS      GLL QP PI E    DI MD + GLP  S  ++ ILVVVD
Sbjct: 1137 QYIRTCVQCQLIKSHRPRLHGLL-QPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVD 1196

Query: 67   RLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRD 109
            R SK  HF+  +    A  + +   + +    GFPR+I SDRD
Sbjct: 1197 RFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRD 1238

[Close]

BLAST of MELO3C003234 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1


Query: 7    QHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPK-SGEIDSILVVVD 66
            Q++  C  CQ  KS      GLL QP PI E    DI MD + GLP  S  ++ ILVVVD
Sbjct: 1163 QYIRTCVQCQLIKSHRPRLHGLL-QPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVD 1222

Query: 67   RLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRD 109
            R SK  HF+  +    A  + +   + +    GFPR+I SDRD
Sbjct: 1223 RFSKRAHFIATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRD 1264

[Close]

BLAST of MELO3C003234 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 1    MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
            ++   +++V+ C  CQ NKS      G L QP P  E+  + + MD I  LP+S   +++
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPL-QPIPPSERPWESLSMDFITALPESSGYNAL 1005

Query: 61   LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFW 117
             VVVDR SK    +      TA+  A  + + V+   G P+ I++D D IF S  W
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

[Close]

BLAST of MELO3C003234 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 1    MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
            ++   +++V+ C  CQ NKS      G L QP P  E+  + + MD I  LP+S   +++
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPL-QPIPPSERPWESLSMDFITALPESSGYNAL 1005

Query: 61   LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFW 117
             VVVDR SK    +      TA+  A  + + V+   G P+ I++D D IF S  W
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

[Close]

BLAST of MELO3C003234 vs. Swiss-Prot
Match: TF21_SCHPO (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-11
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 1


Query: 1    MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
            ++   +++V+ C  CQ NKS      G L QP P  E+  + + MD I  LP+S   +++
Sbjct: 946  IRKQIQEYVQNCHTCQINKSRNHKPYGPL-QPIPPSERPWESLSMDFITALPESSGYNAL 1005

Query: 61   LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFW 117
             VVVDR SK    +      TA+  A  + + V+   G P+ I++D D IF S  W
Sbjct: 1006 FVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTW 1060

[Close]

BLAST of MELO3C003234 vs. TrEMBL
Match: B0B0G0_CUCME (Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 3.1e-35
Identity = 76/124 (61.29%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK+ A+S AGLL QP PI  ++ +DI MD +EGLP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKTQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  ++K VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFVKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. TrEMBL
Match: B0B0F7_CUCME (Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.2e-35
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK  A+S AGLL QP PI  ++ +DI MD +EGLP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKIQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  +IK VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFIKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. TrEMBL
Match: G9FIF5_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1


Query: 1    MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
            MK D    +++CAVCQ+NK+ +++ AGLL QP PI   + +D+ MD +EGLPKSG  DSI
Sbjct: 973  MKQDVITFIQECAVCQQNKTSSLAPAGLL-QPLPIPTLIWEDVSMDFVEGLPKSGGWDSI 1032

Query: 61   LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
            LVVVDRLSKYGHF+GL+HP++A TVA+ +IK VVKL GFP +IVSDRDK+F+S FW +LF
Sbjct: 1033 LVVVDRLSKYGHFIGLRHPFSAATVAQVFIKEVVKLHGFPTTIVSDRDKVFMSIFWKELF 1091

[Close]

BLAST of MELO3C003234 vs. TrEMBL
Match: B0B0F6_CUCME (Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-34
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK+ A+S AGLL QP PI  ++ +DI MD +EGLP S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKTQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPCSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  ++K VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFVKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. TrEMBL
Match: B0B0G1_CUCME (Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-34
Identity = 76/124 (61.29%), Postives = 95/124 (76.61%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK  A+S AGLL QP PI  ++ +DI MD +E LP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKVQALSPAGLL-QPLPIPNRIWEDISMDFVESLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  +IK VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFIKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. NCBI nr
Match: gi|164510414|emb|CAJ65876.1| (putative integrase [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 4.4e-35
Identity = 76/124 (61.29%), Postives = 97/124 (78.23%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK+ A+S AGLL QP PI  ++ +DI MD +EGLP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKTQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  ++K VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFVKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. NCBI nr
Match: gi|164510405|emb|CAJ65870.1| (putative integrase [Cucumis melo])

HSP 1 Score: 155.6 bits (392), Expect = 7.5e-35
Identity = 77/124 (62.10%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK  A+S AGLL QP PI  ++ +DI MD +EGLP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKIQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  +IK VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFIKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. NCBI nr
Match: gi|359372828|gb|AEV42261.1| (hypothetical protein [Beta vulgaris])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 74/120 (61.67%), Postives = 96/120 (80.00%), Query Frame = 1


Query: 1    MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
            MK D    +++CAVCQ+NK+ +++ AGLL QP PI   + +D+ MD +EGLPKSG  DSI
Sbjct: 973  MKQDVITFIQECAVCQQNKTSSLAPAGLL-QPLPIPTLIWEDVSMDFVEGLPKSGGWDSI 1032

Query: 61   LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
            LVVVDRLSKYGHF+GL+HP++A TVA+ +IK VVKL GFP +IVSDRDK+F+S FW +LF
Sbjct: 1033 LVVVDRLSKYGHFIGLRHPFSAATVAQVFIKEVVKLHGFPTTIVSDRDKVFMSIFWKELF 1091

[Close]

BLAST of MELO3C003234 vs. NCBI nr
Match: gi|164510403|emb|CAJ65869.1| (putative integrase [Cucumis melo])

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 76/124 (61.29%), Postives = 96/124 (77.42%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK+ A+S AGLL QP PI  ++ +DI MD +EGLP S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKTQALSPAGLL-QPLPIPNRIWEDISMDFVEGLPCSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  ++K VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFVKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

[Close]

BLAST of MELO3C003234 vs. NCBI nr
Match: gi|164510416|emb|CAJ65877.1| (putative integrase [Cucumis melo])

HSP 1 Score: 153.3 bits (386), Expect = 3.7e-34
Identity = 76/124 (61.29%), Postives = 95/124 (76.61%), Query Frame = 1


Query: 1   MKADTKQHVEQCAVCQKNKSDAMSSAGLLHQPFPILEQVLDDILMDLIEGLPKSGEIDSI 60
           MK D KQ+V+ C VCQ+NK  A+S AGLL QP PI  ++ +DI MD +E LP+S   D+I
Sbjct: 2   MKKDIKQYVDHCHVCQQNKVQALSPAGLL-QPLPIPNRIWEDISMDFVESLPRSKGFDTI 61

Query: 61  LVVVDRLSKYGHFLGLKHPYTAKTVAEKYIKGVVKLCGFPRSIVSDRDKIFLSHFWTKLF 120
           LVVVDRLSKY HF+ L HP++AK VA  +IK VV+L G+PRSIVSDRD++FLSHFW +LF
Sbjct: 62  LVVVDRLSKYAHFITLGHPFSAKVVALVFIKEVVRLHGYPRSIVSDRDRVFLSHFWQELF 121

Query: 121 CSQG 125
             QG
Sbjct: 122 RLQG 124

The following BLAST results are available for this feature:

BLAST of MELO3C003234 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YG31B_YEAST	1.2e-11	41.75	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YI31B_YEAST	1.2e-11	41.75	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
TF211_SCHPO	3.4e-11	33.62	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF212_SCHPO	3.4e-11	33.62	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
TF21_SCHPO	3.4e-11	33.62	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of MELO3C003234 vs. TrEMBL


Match Name	E-value	Identity	Description
B0B0G0_CUCME	3.1e-35	61.29	Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1	[more]
B0B0F7_CUCME	5.2e-35	62.10	Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1	[more]
G9FIF5_BETVU	1.2e-34	61.67	Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1	[more]
B0B0F6_CUCME	1.2e-34	61.29	Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1	[more]
B0B0G1_CUCME	2.6e-34	61.29	Putative integrase (Fragment) OS=Cucumis melo PE=4 SV=1	[more]

BLAST of MELO3C003234 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|164510414\|emb\|CAJ65876.1\|	4.4e-35	61.29	putative integrase [Cucumis melo]	[more]
gi\|164510405\|emb\|CAJ65870.1\|	7.5e-35	62.10	putative integrase [Cucumis melo]	[more]
gi\|359372828\|gb\|AEV42261.1\|	1.7e-34	61.67	hypothetical protein [Beta vulgaris]	[more]
gi\|164510403\|emb\|CAJ65869.1\|	1.7e-34	61.29	putative integrase [Cucumis melo]	[more]
gi\|164510416\|emb\|CAJ65877.1\|	3.7e-34	61.29	putative integrase [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU44099	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003234T1	MELO3C003234T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU44099	MU44099	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 28..128 score: 9
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 40..122 score: 2.
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 33..148 score: 3.54
None	No IPR available	PANTHER	PTHR24559	FAMILY NOT NAMED	coord: 1..120 score: 1.1
None	No IPR available	PANTHER	PTHR24559:SF186	SUBFAMILY NOT NAMED	coord: 1..120 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003234	Cucumber (Chinese Long) v2	cumeB323
MELO3C003234	Cucumber (Chinese Long) v2	cumeB411
MELO3C003234	Watermelon (Charleston Gray)	mewcgB508
MELO3C003234	Watermelon (Charleston Gray)	mewcgB530
MELO3C003234	Watermelon (97103) v1	mewmB554
MELO3C003234	Watermelon (97103) v1	mewmB583
MELO3C003234	Cucurbita pepo (Zucchini)	cpemeB062
MELO3C003234	Cucurbita pepo (Zucchini)	cpemeB456
MELO3C003234	Cucurbita pepo (Zucchini)	cpemeB462
MELO3C003234	Bottle gourd (USVL1VR-Ls)	lsimeB151
MELO3C003234	Cucumber (Gy14) v2	cgybmeB279
MELO3C003234	Silver-seed gourd	carmeB0561
MELO3C003234	Silver-seed gourd	carmeB0584
MELO3C003234	Silver-seed gourd	carmeB0589
MELO3C003234	Cucumber (Chinese Long) v3	cucmeB327
MELO3C003234	Cucumber (Chinese Long) v3	cucmeB421
MELO3C003234	Cucumber (Chinese Long) v3	cucmeB519
MELO3C003234	Watermelon (97103) v2	mewmbB519
MELO3C003234	Watermelon (97103) v2	mewmbB538
MELO3C003234	Watermelon (97103) v2	mewmbB551
MELO3C003234	Wax gourd	mewgoB638
MELO3C003234	Cucumber (Gy14) v1	cgymeB065
MELO3C003234	Cucurbita maxima (Rimu)	cmameB619
MELO3C003234	Cucurbita maxima (Rimu)	cmameB800
MELO3C003234	Cucurbita maxima (Rimu)	cmameB814
MELO3C003234	Cucurbita moschata (Rifu)	cmomeB607
MELO3C003234	Cucurbita moschata (Rifu)	cmomeB784
MELO3C003234	Wild cucumber (PI 183967)	cpimeB322
MELO3C003234	Wild cucumber (PI 183967)	cpimeB408
MELO3C003234	Wild cucumber (PI 183967)	cpimeB511