MELO3C003180 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003180
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrotransposon protein, putative, unclassified
Locationchr8 : 30612128 .. 30612625 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGATGGTGGGAAAACTCGATCCAAGATGGTCATCCAGGATTCTCCTTCATCCAAAGGCTAAAGTCTTTAGCAAATTTTATCAAACCTTGGCAAAAGGAGAAATTACACTCTCTCACCTATGCTAAAGATAACATTATAAGGGAAGTGGAGTCTATTGACAAAAAGGAAGTGGATACTCCTTTGACTCAAGAGGAAAGTAATCGTCGACTAGCCCTAAAAGCTGATCTCAGCGAGTTATCTCTCAAGGAGTCCCAATTCTGGTACCAAAGGGCTAAAAAGCTTTGGCTTAGGGAGGGAGATGAAAACTCCTCCTTCTTTCATAGAATTTGCTCATCAAGACAAAAGAGAAGTTTTATTCATGAAATCCAGGATGAAGTAGGTTTGATTCAGAATACAAACATCAGTATATCAACTGCTTTTATAAAATTCTTTTCAAGGATTTATAGAAGCTCTACAAAAAGTGATCCTCTTTTTATCGATAATCTAGATTAG

mRNA sequence

ATGGGAAGATGGTGGGAAAACTCGATCCAAGATGGTCATCCAGGATTCTCCTTCATCCAAAGGCTAAAGTCTTTAGCAAATTTTATCAAACCTTGGCAAAAGGAGAAATTACACTCTCTCACCTATGCTAAAGATAACATTATAAGGGAAGTGGAGTCTATTGACAAAAAGGAAGTGGATACTCCTTTGACTCAAGAGGAAAGTAATCGTCGACTAGCCCTAAAAGCTGATCTCAGCGAGTTATCTCTCAAGGAGTCCCAATTCTGGTACCAAAGGGCTAAAAAGCTTTGGCTTAGGGAGGGAGATGAAAACTCCTCCTTCTTTCATAGAATTTGCTCATCAAGACAAAAGAGAAGTTTTATTCATGAAATCCAGGATGAAGTAGGTTTGATTCAGAATACAAACATCAGTATATCAACTGCTTTTATAAAATTCTTTTCAAGGATTTATAGAAGCTCTACAAAAAGTGATCCTCTTTTTATCGATAATCTAGATTAG

Coding sequence (CDS)

ATGGGAAGATGGTGGGAAAACTCGATCCAAGATGGTCATCCAGGATTCTCCTTCATCCAAAGGCTAAAGTCTTTAGCAAATTTTATCAAACCTTGGCAAAAGGAGAAATTACACTCTCTCACCTATGCTAAAGATAACATTATAAGGGAAGTGGAGTCTATTGACAAAAAGGAAGTGGATACTCCTTTGACTCAAGAGGAAAGTAATCGTCGACTAGCCCTAAAAGCTGATCTCAGCGAGTTATCTCTCAAGGAGTCCCAATTCTGGTACCAAAGGGCTAAAAAGCTTTGGCTTAGGGAGGGAGATGAAAACTCCTCCTTCTTTCATAGAATTTGCTCATCAAGACAAAAGAGAAGTTTTATTCATGAAATCCAGGATGAAGTAGGTTTGATTCAGAATACAAACATCAGTATATCAACTGCTTTTATAAAATTCTTTTCAAGGATTTATAGAAGCTCTACAAAAAGTGATCCTCTTTTTATCGATAATCTAGATTAG

Protein sequence

MGRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDTPLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFIHEIQDEVGLIQNTNISISTAFIKFFSRIYRSSTKSDPLFIDNLD*
Homology
[Close]
BLAST of MELO3C003180 vs. TrEMBL
Match: A5AI05_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.6e-22
Identity = 54/164 (32.93%), Postives = 94/164 (57.32%), Query Frame = 1 

Query: 2   GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
           GRWW     +G  G  F+++L+ +   +K W K     L+  K +I+ ++ + D  E + 
Sbjct: 227 GRWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLVNFDSLEQEG 286

Query: 62  PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
            L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 287 GLSHELLXQRALRKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 346

Query: 122 HEIQDEVGLIQNTNISISTAFIKFFSRIYRSSTKSDPLFIDNLD 166
            E+++E GL+ N + SI    +++F ++Y S +  +P  ++ LD
Sbjct: 347 KELENENGLMMNNSESIKEEILRYFEKLYXSPS-GEPWRVEXLD 389

[Close]
BLAST of MELO3C003180 vs. TrEMBL
Match: A5BCI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.3e-21
Identity = 51/151 (33.77%), Postives = 88/151 (58.28%), Query Frame = 1 

Query: 2    GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
            GRWW     +G  G  F+++L+ +   +K W K     L+  K++I+ ++ + D  E + 
Sbjct: 921  GRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSDLVNFDSLEQEG 980

Query: 62   PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
             L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 981  GLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSRFFHKVANGRRNRKFI 1040

Query: 122  HEIQDEVGLIQNTNISISTAFIKFFSRIYRS 153
             E+++E GL+ N + SI    +++F ++Y S
Sbjct: 1041 KELENENGLMMNNSESIKEEILRYFEKLYTS 1071

[Close]
BLAST of MELO3C003180 vs. TrEMBL
Match: A5C162_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015915 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.6e-21
Identity = 53/164 (32.32%), Postives = 93/164 (56.71%), Query Frame = 1 

Query: 2   GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
           G WW     +G  G  F+++L+ +   +K W K     L+  K +I+ ++ + D  E + 
Sbjct: 55  GSWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKASFRELSKRKKDILSDLANFDSLEQEG 114

Query: 62  PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
            L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 115 GLSPELLVQRALRKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 174

Query: 122 HEIQDEVGLIQNTNISISTAFIKFFSRIYRSSTKSDPLFIDNLD 166
            E+++E  L+ N + SI    +K+F ++Y S ++ +P  ++ LD
Sbjct: 175 KELENESDLMLNNSESIKEEILKYFEKLYASPSR-EPWRVEGLD 217

[Close]
BLAST of MELO3C003180 vs. TrEMBL
Match: A5C377_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 1 

Query: 2    GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
            GRWW     +G  G  F+++L+ +   +K W K     L+  K +I+  + + D  E + 
Sbjct: 992  GRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVLANFDSLEQEG 1051

Query: 62   PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
             L+QE   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 1052 GLSQELLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 1111

Query: 122  HEIQDEVGLIQNTNISISTAFIKFFSRIY 151
             E+++E GL+ N   SI    +K+F ++Y
Sbjct: 1112 KELENESGLMLNNPESIKEEILKYFEKLY 1140

[Close]
BLAST of MELO3C003180 vs. TrEMBL
Match: A5AK27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 1 

Query: 2    GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
            GRWW     +G  G  F+++L+ +   +K W K     L+  K +I+  + + D  E + 
Sbjct: 1014 GRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVLANFDSLEQEG 1073

Query: 62   PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
             L+QE   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 1074 GLSQELLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 1133

Query: 122  HEIQDEVGLIQNTNISISTAFIKFFSRIY 151
             E+++E GL+ N   SI    +K+F ++Y
Sbjct: 1134 KELENESGLMLNNPESIKEEILKYFEKLY 1162

[Close]
BLAST of MELO3C003180 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 4.4e-27
Identity = 58/68 (85.29%), Postives = 66/68 (97.06%), Query Frame = 1 

Query: 1   MGRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVD 60
           +GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKL+S  +AKD+I+REV+SIDKKE+D
Sbjct: 930 LGRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLNSFAFAKDSIVREVDSIDKKELD 989

Query: 61  TPLTQEES 69
           TPL+QEES
Sbjct: 990 TPLSQEES 997

[Close]
BLAST of MELO3C003180 vs. NCBI nr
Match: gi|147845854|emb|CAN80093.1| (hypothetical protein VITISV_010721 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 9.5e-22
Identity = 54/164 (32.93%), Postives = 94/164 (57.32%), Query Frame = 1 

Query: 2   GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
           GRWW     +G  G  F+++L+ +   +K W K     L+  K +I+ ++ + D  E + 
Sbjct: 227 GRWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKASFGELSKRKKDILSDLVNFDSLEQEG 286

Query: 62  PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
            L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 287 GLSHELLXQRALRKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 346

Query: 122 HEIQDEVGLIQNTNISISTAFIKFFSRIYRSSTKSDPLFIDNLD 166
            E+++E GL+ N + SI    +++F ++Y S +  +P  ++ LD
Sbjct: 347 KELENENGLMMNNSESIKEEILRYFEKLYXSPS-GEPWRVEXLD 389

[Close]
BLAST of MELO3C003180 vs. NCBI nr
Match: gi|147811389|emb|CAN65484.1| (hypothetical protein VITISV_029474 [Vitis vinifera])

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-21
Identity = 51/151 (33.77%), Postives = 88/151 (58.28%), Query Frame = 1 

Query: 2    GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
            GRWW     +G  G  F+++L+ +   +K W K     L+  K++I+ ++ + D  E + 
Sbjct: 921  GRWWREFQGNGWEGHKFMRKLQFVKAKLKVWNKASFGELSKRKEDILSDLVNFDSLEQEG 980

Query: 62   PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
             L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 981  GLSHELLAQRALKKGELEELILREEIHWRQKARVKWVKEGDCNSRFFHKVANGRRNRKFI 1040

Query: 122  HEIQDEVGLIQNTNISISTAFIKFFSRIYRS 153
             E+++E GL+ N + SI    +++F ++Y S
Sbjct: 1041 KELENENGLMMNNSESIKEEILRYFEKLYTS 1071

[Close]
BLAST of MELO3C003180 vs. NCBI nr
Match: gi|147833372|emb|CAN66242.1| (hypothetical protein VITISV_015915 [Vitis vinifera])

HSP 1 Score: 109.0 bits (271), Expect = 8.1e-21
Identity = 53/164 (32.32%), Postives = 93/164 (56.71%), Query Frame = 1 

Query: 2   GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
           G WW     +G  G  F+++L+ +   +K W K     L+  K +I+ ++ + D  E + 
Sbjct: 55  GSWWREFQGNGWEGHKFMRKLQFVKAKLKEWNKASFRELSKRKKDILSDLANFDSLEQEG 114

Query: 62  PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
            L+ E   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 115 GLSPELLVQRALRKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 174

Query: 122 HEIQDEVGLIQNTNISISTAFIKFFSRIYRSSTKSDPLFIDNLD 166
            E+++E  L+ N + SI    +K+F ++Y S ++ +P  ++ LD
Sbjct: 175 KELENESDLMLNNSESIKEEILKYFEKLYASPSR-EPWRVEGLD 217

[Close]
BLAST of MELO3C003180 vs. NCBI nr
Match: gi|147780533|emb|CAN69126.1| (hypothetical protein VITISV_008195 [Vitis vinifera])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = 1 

Query: 2    GRWWENSIQDGHPGFSFIQRLKSLANFIKPWQKEKLHSLTYAKDNIIREVESIDKKEVDT 61
            GRWW     +G  G  F+++L+ +   +K W K     L+  K +I+  + + D  E + 
Sbjct: 1014 GRWWSEFQGNGWEGHKFMRKLQFVKAKLKEWNKTSFGELSKKKKDILAVLANFDSLEQEG 1073

Query: 62   PLTQEESNRRLALKADLSELSLKESQFWYQRAKKLWLREGDENSSFFHRICSSRQKRSFI 121
             L+QE   +R   K +L EL L+E   W Q+A+  W++EGD NS FFH++ + R+ R FI
Sbjct: 1074 GLSQELLVQRAFSKGELEELILREEIHWRQKARVKWVKEGDCNSKFFHKVANGRRNRKFI 1133

Query: 122  HEIQDEVGLIQNTNISISTAFIKFFSRIY 151
             E+++E GL+ N   SI    +K+F ++Y
Sbjct: 1134 KELENESGLMLNNPESIKEEILKYFEKLY 1162

The following BLAST results are available for this feature:
BLAST of MELO3C003180 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AI05_VITVI6.6e-2232.93Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010721 PE=4 SV=1[more]
A5BCI7_VITVI3.3e-2133.77Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_029474 PE=4 SV=1[more]
A5C162_VITVI5.6e-2132.32Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015915 PE=4 SV=1[more]
A5C377_VITVI1.3e-2034.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016641 PE=4 SV=1[more]
A5AK27_VITVI1.3e-2034.90Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1[more]
BLAST of MELO3C003180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071590|ref|XP_008460776.1|4.4e-2785.29PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|147845854|emb|CAN80093.1|9.5e-2232.93hypothetical protein VITISV_010721 [Vitis vinifera][more]
gi|147811389|emb|CAN65484.1|4.7e-2133.77hypothetical protein VITISV_029474 [Vitis vinifera][more]
gi|147833372|emb|CAN66242.1|8.1e-2132.32hypothetical protein VITISV_015915 [Vitis vinifera][more]
gi|147780533|emb|CAN69126.1|1.8e-2034.90hypothetical protein VITISV_008195 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003180T1MELO3C003180T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31696FAMILY NOT NAMEDcoord: 5..133
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003180Cucurbita moschata (Rifu)cmomeB237
MELO3C003180Cucurbita moschata (Rifu)cmomeB607
MELO3C003180Cucurbita moschata (Rifu)cmomeB765
MELO3C003180Cucurbita moschata (Rifu)cmomeB784
MELO3C003180Wild cucumber (PI 183967)cpimeB255
MELO3C003180Wild cucumber (PI 183967)cpimeB322
MELO3C003180Wild cucumber (PI 183967)cpimeB408
MELO3C003180Cucumber (Chinese Long) v2cumeB259
MELO3C003180Cucumber (Chinese Long) v2cumeB323
MELO3C003180Cucumber (Chinese Long) v2cumeB411
MELO3C003180Watermelon (Charleston Gray)mewcgB508
MELO3C003180Watermelon (Charleston Gray)mewcgB542
MELO3C003180Watermelon (Charleston Gray)mewcgB530
MELO3C003180Watermelon (97103) v1mewmB566
MELO3C003180Watermelon (97103) v1mewmB554
MELO3C003180Watermelon (97103) v1mewmB583
MELO3C003180Cucurbita pepo (Zucchini)cpemeB062
MELO3C003180Cucurbita pepo (Zucchini)cpemeB452
MELO3C003180Cucurbita pepo (Zucchini)cpemeB593
MELO3C003180Cucurbita pepo (Zucchini)cpemeB820
MELO3C003180Bottle gourd (USVL1VR-Ls)lsimeB151
MELO3C003180Bottle gourd (USVL1VR-Ls)lsimeB275
MELO3C003180Bottle gourd (USVL1VR-Ls)lsimeB332
MELO3C003180Cucumber (Gy14) v2cgybmeB226
MELO3C003180Cucumber (Gy14) v2cgybmeB279
MELO3C003180Silver-seed gourdcarmeB0093
MELO3C003180Silver-seed gourdcarmeB0167
MELO3C003180Silver-seed gourdcarmeB0561
MELO3C003180Silver-seed gourdcarmeB0584
MELO3C003180Silver-seed gourdcarmeB0975
MELO3C003180Cucumber (Chinese Long) v3cucmeB262
MELO3C003180Cucumber (Chinese Long) v3cucmeB327
MELO3C003180Cucumber (Chinese Long) v3cucmeB421
MELO3C003180Watermelon (97103) v2mewmbB519
MELO3C003180Watermelon (97103) v2mewmbB538
MELO3C003180Watermelon (97103) v2mewmbB551
MELO3C003180Wax gourdmewgoB618
MELO3C003180Wax gourdmewgoB638
MELO3C003180Melon (DHL92) v3.5.1memeB034
MELO3C003180Melon (DHL92) v3.5.1memeB143
MELO3C003180Cucumber (Gy14) v1cgymeB065
MELO3C003180Cucumber (Gy14) v1cgymeB295
MELO3C003180Cucumber (Gy14) v1cgymeB318
MELO3C003180Cucurbita maxima (Rimu)cmameB249
MELO3C003180Cucurbita maxima (Rimu)cmameB619
MELO3C003180Cucurbita maxima (Rimu)cmameB712
MELO3C003180Cucurbita maxima (Rimu)cmameB778
MELO3C003180Cucurbita maxima (Rimu)cmameB800