MELO3C003050 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003050
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Retrotransposon gag protein, putative
Location	chr9 : 10837261 .. 10837431 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAGCAGGTCGGTGGAAGACTACTCTAAAGAGATGGACAATTTGATGGATCAACTTGATCTTGATGAGAAAATGGAGACTCTCATGGCACGAGTTTTGAATGGCCTTAACAAGGAGATTGCTGATAAGGTTGGTTTGTAG

mRNA sequence

ATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAGCAGGTCGGTGGAAGACTACTCTAAAGAGATGGACAATTTGATGGATCAACTTGATCTTGATGAGAAAATGGAGACTCTCATGGCACGAGTTTTGAATGGCCTTAACAAGGAGATTGCTGATAAGGTTGGTTTGTAG

Coding sequence (CDS)

ATGGCACAAAAGCTTCAAGCATTGAGGCAAGGCAGCAGGTCGGTGGAAGACTACTCTAAAGAGATGGACAATTTGATGGATCAACTTGATCTTGATGAGAAAATGGAGACTCTCATGGCACGAGTTTTGAATGGCCTTAACAAGGAGATTGCTGATAAGGTTGGTTTGTAG

Protein sequence

MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL*

Homology

[Close]

BLAST of MELO3C003050 vs. TrEMBL
Match: A5AMK2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-06
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKLQ+L QG RSV+DY KEM+  M + +++E  E  MAR LNGLN++IA+ V L
Sbjct: 286 QKLQSLTQGYRSVDDYHKEMEIAMIRANVEENREATMARFLNGLNRDIANVVEL 339

[Close]

BLAST of MELO3C003050 vs. TrEMBL
Match: A5BZH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-06
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKLQ+L QG RSV+DY KEM+  M   +++E  E  MAR LNGLN++IA+ V L
Sbjct: 227 QKLQSLTQGYRSVDDYHKEMEIAMIPTNVEEDREATMARFLNGLNRDIANVVEL 280

[Close]

BLAST of MELO3C003050 vs. TrEMBL
Match: A5BYV1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.7e-06
Identity = 29/54 (53.70%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKLQ+L QG RSV+DY K+M+  M + +++E  E  MAR LNGLN++IA+ V L
Sbjct: 218 QKLQSLTQGYRSVDDYHKKMEIAMIRANVEEDREVTMARFLNGLNRDIANVVEL 271

[Close]

BLAST of MELO3C003050 vs. TrEMBL
Match: A5AZG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.7e-06
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKLQ+L QG RSV+DY KEM+  M + +++E  E  MAR LNGLN +IA+ V L
Sbjct: 157 QKLQSLTQGYRSVDDYHKEMEIAMIRANVEEDREATMARFLNGLNWDIANVVEL 210

[Close]

BLAST of MELO3C003050 vs. NCBI nr
Match: gi|985458834|ref|XP_015387941.1| (PREDICTED: uncharacterized protein LOC107177913 [Citrus sinensis])

HSP 1 Score: 68.6 bits (166), Expect = 4.1e-09
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 1   MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           + QKLQ L QGSRSVEDY KEM+  M +++++E  E  MAR LNGLN+EIADKV L
Sbjct: 190 LCQKLQRLTQGSRSVEDYYKEMEIAMIRVNVEEDREATMARFLNGLNREIADKVEL 245

[Close]

BLAST of MELO3C003050 vs. NCBI nr
Match: gi|985458834|ref|XP_015387941.1| (PREDICTED: uncharacterized protein LOC107177913 [Citrus sinensis])

HSP 1 Score: 33.5 bits (75), Expect = 1.5e+02
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 1


Query: 22 MDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
          M+  M + ++ E  E +MA  LNGLN+EI DKV L
Sbjct: 1  MEIAMIRANVGEDREAIMAGSLNGLNREIVDKVEL 35

HSP 2 Score: 67.4 bits (163), Expect = 9.2e-09
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1


Query: 1    MAQKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
            + Q++Q L+QGSRSV+DY KEM+ +M +  +DE MET MAR L  LNK+IAD+V L
Sbjct: 1092 LVQRIQVLKQGSRSVDDYYKEMEMIMTRATIDEDMETTMARSLASLNKDIADRVDL 1147

[Close]

BLAST of MELO3C003050 vs. NCBI nr
Match: gi|1000963681|ref|XP_015575421.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [Ricinus communis])

HSP 1 Score: 61.2 bits (147), Expect = 6.6e-07
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           Q+LQ LRQG+ SVE+Y KEM+  M + +++E  E  MAR LNGLNK IAD V L
Sbjct: 55  QRLQTLRQGTMSVEEYHKEMEMAMIKANMEEDREATMARFLNGLNKNIADLVEL 108

HSP 2 Score: 64.3 bits (155), Expect = 7.8e-08
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKL+ L QG++SVEDY +EM+ LM + D+DE M+T MAR L+GLN++I D++ L
Sbjct: 210 QKLRCLLQGTKSVEDYHQEMETLMIKADVDEPMDTTMARFLSGLNRDIQDRMEL 263

[Close]

BLAST of MELO3C003050 vs. NCBI nr
Match: gi|923696159|ref|XP_013658200.1| (PREDICTED: uncharacterized protein LOC106362922 [Brassica napus])

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-07
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1


Query: 3   QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
           QKL+ L QG++SVEDY +EM+ LM + D+DE M+  MAR L+GLN++I D++ L
Sbjct: 136 QKLRRLLQGTKSVEDYHQEMETLMIKADVDEPMDATMARFLSGLNRDIQDRMEL 189

[Close]

BLAST of MELO3C003050 vs. NCBI nr
Match: gi|568831760|ref|XP_006470127.1| (PREDICTED: uncharacterized protein LOC102606919 [Citrus sinensis])

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-07
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 3  QKLQALRQGSRSVEDYSKEMDNLMDQLDLDEKMETLMARVLNGLNKEIADKVGL 57
          Q+LQ+L QGSRSVEDY KEM+ +M + +++E+ E  MAR L+GLN++IA+ V L
Sbjct: 20 QRLQSLTQGSRSVEDYHKEMEIIMIRANIEEEREATMARFLHGLNQDIANVVDL 73

The following BLAST results are available for this feature:

BLAST of MELO3C003050 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AMK2_VITVI	1.8e-06	55.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016481 PE=4 SV=1	[more]
A5BZH4_VITVI	3.9e-06	55.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036847 PE=4 SV=1	[more]
A5BYV1_VITVI	6.7e-06	53.70	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008811 PE=4 SV=1	[more]
A5AZG1_VITVI	8.7e-06	55.56	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020379 PE=4 SV=1	[more]

BLAST of MELO3C003050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985458834\|ref\|XP_015387941.1\|	4.1e-09	62.50	PREDICTED: uncharacterized protein LOC107177913 [Citrus sinensis]	[more]
gi\|985458834\|ref\|XP_015387941.1\|	1.5e+02	48.57	PREDICTED: uncharacterized protein LOC107177913 [Citrus sinensis]	[more]
gi\|1000963681\|ref\|XP_015575421.1\|	6.6e-07	57.41	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107261342, partial [R...	[more]
gi\|923696159\|ref\|XP_013658200.1\|	3.9e-07	53.70	PREDICTED: uncharacterized protein LOC106362922 [Brassica napus]	[more]
gi\|568831760\|ref\|XP_006470127.1\|	5.1e-07	55.56	PREDICTED: uncharacterized protein LOC102606919 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003050T1	MELO3C003050T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 2..48 score: 2.
None	No IPR available	unknown	Coil	Coil	coord: 8..35 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003050	Watermelon (97103) v2	mewmbB020
MELO3C003050	Wax gourd	mewgoB015
MELO3C003050	Cucumber (Gy14) v1	cgymeB419
MELO3C003050	Cucurbita maxima (Rimu)	cmameB252
MELO3C003050	Cucurbita maxima (Rimu)	cmameB636
MELO3C003050	Cucurbita moschata (Rifu)	cmomeB240
MELO3C003050	Cucurbita moschata (Rifu)	cmomeB626
MELO3C003050	Wild cucumber (PI 183967)	cpimeB343
MELO3C003050	Cucumber (Chinese Long) v2	cumeB350
MELO3C003050	Watermelon (Charleston Gray)	mewcgB023
MELO3C003050	Watermelon (97103) v1	mewmB014
MELO3C003050	Cucurbita pepo (Zucchini)	cpemeB158
MELO3C003050	Cucurbita pepo (Zucchini)	cpemeB360
MELO3C003050	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003050	Cucumber (Gy14) v2	cgybmeB294
MELO3C003050	Silver-seed gourd	carmeB0531
MELO3C003050	Silver-seed gourd	carmeB0822
MELO3C003050	Cucumber (Chinese Long) v3	cucmeB351