MELO3C003019 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003019
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Similarity to Athila retroelement ORF1 protein
Location	chr9 : 10074799 .. 10075134 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTAGACATATCCATTGTTCGCCCAGAAGGAAAGATTGAAAATCTTTTGGTGAAGGTGGAGAAATTCGTATTTCTCGCAAACTTTACCATTTTGGACTATGAAGCAGATTGGAAGGTTCCTATCATTTTGGGGCAGCCATTTCTGTCAACAAGCTGCACCTTAATAGATATCCACCAAGGGGAATTAGCAATGCAACTGAATGACCAAGAAGTAACTTTCAACGTTGCAAACACATTGAAGTTTCCCTCAAATGTTGAAAACTACAGCAGAATTGAATCCCTTGGGTGGGATTATTGCAAGGAAGAAGTATTGGCTAAGCTATTCAGCTCTTAA

mRNA sequence

TTAGTAGACATATCCATTGTTCGCCCAGAAGGAAAGATTGAAAATCTTTTGGTGAAGGTGGAGAAATTCGTATTTCTCGCAAACTTTACCATTTTGGACTATGAAGCAGATTGGAAGGTTCCTATCATTTTGGGGCAGCCATTTCTGTCAACAAGCTGCACCTTAATAGATATCCACCAAGGGGAATTAGCAATGCAACTGAATGACCAAGAAGTAACTTTCAACGTTGCAAACACATTGAAGTTTCCCTCAAATGTTGAAAACTACAGCAGAATTGAATCCCTTGGGTGGGATTATTGCAAGGAAGAAGTATTGGCTAAGCTATTCAGCTCTTAA

Coding sequence (CDS)

TTAGTAGACATATCCATTGTTCGCCCAGAAGGAAAGATTGAAAATCTTTTGGTGAAGGTGGAGAAATTCGTATTTCTCGCAAACTTTACCATTTTGGACTATGAAGCAGATTGGAAGGTTCCTATCATTTTGGGGCAGCCATTTCTGTCAACAAGCTGCACCTTAATAGATATCCACCAAGGGGAATTAGCAATGCAACTGAATGACCAAGAAGTAACTTTCAACGTTGCAAACACATTGAAGTTTCCCTCAAATGTTGAAAACTACAGCAGAATTGAATCCCTTGGGTGGGATTATTGCAAGGAAGAAGTATTGGCTAAGCTATTCAGCTCTTAA

Protein sequence

LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQGELAMQLNDQEVTFNVANTLKFPSNVENYSRIESLGWDYCKEEVLAKLFSS*

Homology

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BLAST of MELO3C003019 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 50/87 (57.47%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D SI  P G IE++LVKV+KF+F  +F +LD E D  VP+ILG+PFL+TS TLID HQ
Sbjct: 401 LADRSIKHPRGIIEDVLVKVDKFLFPIDFIVLDMEEDRDVPLILGRPFLATSRTLIDFHQ 460

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVE 88
           G+L +++ D++VTFNV   +KFPSNV+
Sbjct: 461 GKLILRVQDEQVTFNVFEAMKFPSNVD 487

[Close]

BLAST of MELO3C003019 vs. TrEMBL
Match: U5CWW5_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.7e-18
Identity = 46/86 (53.49%), Postives = 65/86 (75.58%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S+  PEGKIE++LV+V+KF+F A+F ILDYE D +VPIILG+PFL+T  TLID+ +
Sbjct: 145 LADRSMAHPEGKIEDVLVQVDKFIFPADFIILDYEEDREVPIILGRPFLATGRTLIDVEK 204

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNV 87
           GEL M+  D++ TF V + ++ P  +
Sbjct: 205 GELTMRAQDEQATFKVFHPIRAPDAI 230

[Close]

BLAST of MELO3C003019 vs. TrEMBL
Match: A0A151SV10_CAJCA (Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_014042 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.8e-16
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S+  P G +E++LVKV+KF+F ANF +LD E D KVPIILG+PFL+T   LID+ Q
Sbjct: 71  LADRSVTCPYGVVEDVLVKVDKFIFPANFVVLDMEEDAKVPIILGRPFLATGRALIDVQQ 130

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVENYSRIE 94
           GEL +++ +++VTF++   LK   + E+  ++E
Sbjct: 131 GELMLRVANEKVTFSINEALKHKVDREDCFQVE 163

[Close]

BLAST of MELO3C003019 vs. TrEMBL
Match: A0A151SCN8_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_025497 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.2e-16
Identity = 42/95 (44.21%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           LVD SI  P G IEN+LVKV+KF+F A+F ++D E D+ +PIILG+PF+ T+  +ID+  
Sbjct: 23  LVDRSIKYPYGVIENMLVKVDKFIFPADFVVMDMEEDYAIPIILGRPFMKTARAIIDVEN 82

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVENYSRIESL 96
           GE  ++++D+ +TFNV   +  P++     R++ L
Sbjct: 83  GEFKLRVHDEVITFNVFEVMTHPNDKSACFRMDVL 117

[Close]

BLAST of MELO3C003019 vs. TrEMBL
Match: A0A151RD37_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038367 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 45/92 (48.91%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S+  P G +E++LVKV+KF+F  +F +LD E D KVPIILG+PFL+T   LID+ Q
Sbjct: 38  LADRSVTCPYGVVEDVLVKVDKFIFPTDFVVLDMEEDAKVPIILGRPFLATGRALIDVQQ 97

Query: 61  GELAMQLNDQEVTFNVANTLKF--PSNVENYS 91
           GEL +++ +++VTF++   LK   P  +EN S
Sbjct: 98  GELMLRVANEKVTFSINEALKLYAPGKLENVS 129

[Close]

BLAST of MELO3C003019 vs. NCBI nr
Match: gi|659130345|ref|XP_008465121.1| (PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 6.2e-25
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1


Query: 2   VDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQG 61
           VD SI + EGKIE++LVKV+KF+F A+F ILDYEA+ +VPII G+PFLST   LID+HQG
Sbjct: 85  VDRSIAKHEGKIEDILVKVDKFLFHADFIILDYEANQEVPIIFGRPFLSTGHALIDVHQG 144

Query: 62  ELAMQLNDQEVTFNVANTLKFPSNVENYSRIESLG 97
           EL M+ ND EV FNV N +KFP++ +NYS IESLG
Sbjct: 145 ELTMRFND-EVKFNVMNAMKFPTDDKNYSMIESLG 178

[Close]

BLAST of MELO3C003019 vs. NCBI nr
Match: gi|985448427|ref|XP_015385694.1| (PREDICTED: uncharacterized protein LOC107177009 [Citrus sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S V PEGKIE++LVKV+KF+F  +F +LD+EA+ KVPIILG+PFL+T  TLID+ +
Sbjct: 222 LADRSHVYPEGKIEDVLVKVDKFIFPVDFIVLDFEANKKVPIILGRPFLATGKTLIDVQK 281

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVEN 89
           GEL M++NDQ+VTFNV + +K P  +E+
Sbjct: 282 GELTMRMNDQQVTFNVLDAMKSPDEIED 309

[Close]

BLAST of MELO3C003019 vs. NCBI nr
Match: gi|659111569|ref|XP_008455795.1| (PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo])

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-20
Identity = 52/95 (54.74%), Postives = 70/95 (73.68%), Query Frame = 1


Query: 2   VDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQG 61
           VD SI RPEGKI+++L+KV+KF+FLA+F ILDYEAD +VPIIL   FL T   LID+HQ 
Sbjct: 105 VDRSITRPEGKIDDVLIKVDKFLFLADFIILDYEADREVPIILELSFLRTGHALIDVHQW 164

Query: 62  ELAMQLNDQEVTFNVANTLKFPSNVENYSRIESLG 97
           EL M LNDQ+++FN+ N +  P  ++   ++  LG
Sbjct: 165 ELTMLLNDQKISFNIVNAMNSPLMLKTAMQLNLLG 199

[Close]

BLAST of MELO3C003019 vs. NCBI nr
Match: gi|985473850|ref|XP_015381895.1| (PREDICTED: uncharacterized protein LOC107175069 [Citrus sinensis])

HSP 1 Score: 106.3 bits (264), Expect = 3.5e-20
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S V PEGKIE++L KV+KF+F  +F +LD+EAD +VPIILG+PFL+T  TLID+ +
Sbjct: 174 LADRSHVYPEGKIEDVLAKVDKFIFPVDFIVLDFEADKEVPIILGKPFLATGKTLIDVQK 233

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVE--NYSRIESL----GWDYCKEEVLAKL 109
           GEL M +NDQ+VTFNV   ++ P  +E  N+  +  L      D C   VL K+
Sbjct: 234 GELTMGVNDQQVTFNVLEAMRNPDEIEDCNFLSVMDLVVADRMDKCCSNVLNKV 287

[Close]

BLAST of MELO3C003019 vs. NCBI nr
Match: gi|697107120|ref|XP_009607393.1| (PREDICTED: uncharacterized protein LOC104101615 [Nicotiana tomentosiformis])

HSP 1 Score: 105.5 bits (262), Expect = 6.0e-20
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1


Query: 1   LVDISIVRPEGKIENLLVKVEKFVFLANFTILDYEADWKVPIILGQPFLSTSCTLIDIHQ 60
           L D S+V PEG IE++LV+VEKF+  A+F +LDYEAD +VPIILG+PFL+T   LIDI +
Sbjct: 210 LADRSLVMPEGIIEDVLVRVEKFILPADFIVLDYEADEEVPIILGRPFLATGGALIDIRE 269

Query: 61  GELAMQLNDQEVTFNVANTLKFPSNVENYS 91
           G+L M++ D+E+TFN    LK P + E++S
Sbjct: 270 GKLKMRVGDEEITFNTYKALKLPKHYEDFS 299

The following BLAST results are available for this feature:

BLAST of MELO3C003019 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AZ88_VITVI	1.2e-19	57.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
U5CWW5_AMBTC	6.7e-18	53.49	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00000010 PE=4 SV=...	[more]
A0A151SV10_CAJCA	2.8e-16	48.39	Retrovirus-related Pol polyprotein from transposon opus OS=Cajanus cajan GN=KK1_...	[more]
A0A151SCN8_CAJCA	8.2e-16	44.21	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_025497 PE=4 SV=1	[more]
A0A151RD37_CAJCA	1.1e-15	48.91	Uncharacterized protein OS=Cajanus cajan GN=KK1_038367 PE=4 SV=1	[more]

BLAST of MELO3C003019 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130345\|ref\|XP_008465121.1\|	6.2e-25	65.26	PREDICTED: uncharacterized protein LOC103502805 [Cucumis melo]	[more]
gi\|985448427\|ref\|XP_015385694.1\|	1.9e-21	59.09	PREDICTED: uncharacterized protein LOC107177009 [Citrus sinensis]	[more]
gi\|659111569\|ref\|XP_008455795.1\|	3.5e-20	54.74	PREDICTED: uncharacterized protein LOC103495890 [Cucumis melo]	[more]
gi\|985473850\|ref\|XP_015381895.1\|	3.5e-20	50.00	PREDICTED: uncharacterized protein LOC107175069 [Citrus sinensis]	[more]
gi\|697107120\|ref\|XP_009607393.1\|	6.0e-20	55.56	PREDICTED: uncharacterized protein LOC104101615 [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003019T1	MELO3C003019T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 1..60 score: 1.7
None	No IPR available	PANTHER	PTHR33067:SF2	SUBFAMILY NOT NAMED	coord: 1..60 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003019	Cucumber (Chinese Long) v3	cucmeB351
MELO3C003019	Watermelon (97103) v2	mewmbB020
MELO3C003019	Cucumber (Gy14) v1	cgymeB419
MELO3C003019	Cucurbita maxima (Rimu)	cmameB632
MELO3C003019	Cucurbita moschata (Rifu)	cmomeB251
MELO3C003019	Wild cucumber (PI 183967)	cpimeB343
MELO3C003019	Cucumber (Chinese Long) v2	cumeB350
MELO3C003019	Watermelon (Charleston Gray)	mewcgB023
MELO3C003019	Cucurbita pepo (Zucchini)	cpemeB352
MELO3C003019	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003019	Cucumber (Gy14) v2	cgybmeB294