MELO3C003016 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003016
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative reverse transcriptase
Location	chr9 : 9955616 .. 9955915 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGAAGAGGGTCAAATGGGCACCATTCATTTTCAAAGGGATTAAACCTTGCAATGAAAGAGGTTGTTAAAAAGGAAATCATCAAATGGCTTGACATGGGAGTTACCTATCCAATCTCAGATAGTGAATGGGTTAGCCCAATCCAATGCGTTCGTAAGAAAAGCAGAATGACTGTTGTGAAGAATGAGCAAAATGAATTGATTCTAATGCGAACAATCATGAGGTGGAGGATTTGTATGGACTACCACAAGTTGAATGCGGTGACAAACAAAGGACCACTTTCCCCTACCTTTCATTGA

mRNA sequence

GTTGGAAGAGGGTCAAATGGGCACCATTCATTTTCAAAGGGATTAAACCTTGCAATGAAAGAGGTTGTTAAAAAGGAAATCATCAAATGGCTTGACATGGGAGTTACCTATCCAATCTCAGATAGTGAATGGGTTAGCCCAATCCAATGCGTTCGTAAGAAAAGCAGAATGACTGTTGTGAAGAATGAGCAAAATGAATTGATTCTAATGCGAACAATCATGAGGTGGAGGATTTGTATGGACTACCACAAGTTGAATGCGGTGACAAACAAAGGACCACTTTCCCCTACCTTTCATTGA

Coding sequence (CDS)

GTTGGAAGAGGGTCAAATGGGCACCATTCATTTTCAAAGGGATTAAACCTTGCAATGAAAGAGGTTGTTAAAAAGGAAATCATCAAATGGCTTGACATGGGAGTTACCTATCCAATCTCAGATAGTGAATGGGTTAGCCCAATCCAATGCGTTCGTAAGAAAAGCAGAATGACTGTTGTGAAGAATGAGCAAAATGAATTGATTCTAATGCGAACAATCATGAGGTGGAGGATTTGTATGGACTACCACAAGTTGAATGCGGTGACAAACAAAGGACCACTTTCCCCTACCTTTCATTGA

Protein sequence

VGRGSNGHHSFSKGLNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIMRWRICMDYHKLNAVTNKGPLSPTFH*

Homology

[Close]

BLAST of MELO3C003016 vs. TrEMBL
Match: M1DJA9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039541 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  M+EVVKKEIIKWLD GV +PI+DS WV P+QCV KK  +T+V NE+NEL+LMR + 
Sbjct: 135 LNPPMQEVVKKEIIKWLDAGVIFPIADSNWVCPVQCVPKKGGITMVPNERNELVLMRLVT 194

Query: 75  RWRICMDYHKLNAVTNK 92
            WR+CMDY  LNA T K
Sbjct: 195 GWRVCMDYRNLNAWTEK 211

[Close]

BLAST of MELO3C003016 vs. TrEMBL
Match: A0A151SYU5_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_015431 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-21
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 15 LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
          LNL MKEVVKKE+IK LD G+ YPISDS WVSP+Q V KK  MTV++NE+NELI  RT+ 
Sbjct: 20 LNLVMKEVVKKEVIKLLDAGMIYPISDSAWVSPVQVVPKKGGMTVIQNEKNELIPSRTVT 79

Query: 75 RWRICMDYHKLNAVTNK 92
           WR+C+DY KLN  T K
Sbjct: 80 GWRMCIDYRKLNKATRK 96

[Close]

BLAST of MELO3C003016 vs. TrEMBL
Match: A0A151QTE7_CAJCA (Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_045544 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 49/77 (63.64%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  MKEVVKKE++K L+  + YPISDS WVSP+Q V KK RMTV++NE+NELIL RT+ 
Sbjct: 818 LNPTMKEVVKKEVLKLLEARIIYPISDSTWVSPVQVVPKKGRMTVIQNEKNELILTRTVT 877

Query: 75  RWRICMDYHKLNAVTNK 92
            WR+C+DY KLN  T K
Sbjct: 878 GWRMCIDYRKLNQATRK 894

[Close]

BLAST of MELO3C003016 vs. TrEMBL
Match: A0A151QRK4_CAJCA (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_046326 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.7e-20
Identity = 50/77 (64.94%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  MKEVVKKE+IK LD G+ YPISDS WVSP+Q V KK  MTV++NE+NELI  RT+ 
Sbjct: 305 LNPVMKEVVKKEVIKLLDAGIIYPISDSAWVSPVQVVPKKGGMTVIQNEKNELIPSRTVT 364

Query: 75  RWRICMDYHKLNAVTNK 92
            WR+C+DY KLN  T K
Sbjct: 365 GWRMCIDYRKLNKATRK 381

[Close]

BLAST of MELO3C003016 vs. TrEMBL
Match: M1DBA5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035801 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.7e-20
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  M+EVVKKEIIKWLD GV YPI+DS WV P+QCV K   +TVV NE+NE + MR + 
Sbjct: 295 LNPPMQEVVKKEIIKWLDAGVIYPIADSSWVCPVQCVPKNGGLTVVPNERNEFVPMRPVT 354

Query: 75  RWRICMDYHKLNAVTNK 92
            WR+C+DY KLNA   K
Sbjct: 355 GWRVCIDYRKLNAWIEK 371

[Close]

BLAST of MELO3C003016 vs. NCBI nr
Match: gi|848869888|ref|XP_012835563.1| (PREDICTED: uncharacterized protein LOC105956264 [Erythranthe guttata])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 56/77 (72.73%), Postives = 62/77 (80.52%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LNL MKEVVKKEIIKWLD G+ +PISDS WVSP+QCV KK  MTV+KNE+NELI  RT+ 
Sbjct: 463 LNLIMKEVVKKEIIKWLDAGIIFPISDSAWVSPVQCVPKKGGMTVIKNEKNELIPSRTVT 522

Query: 75  RWRICMDYHKLNAVTNK 92
            WRICMDY KLN  T K
Sbjct: 523 GWRICMDYRKLNKATRK 539

[Close]

BLAST of MELO3C003016 vs. NCBI nr
Match: gi|698556791|ref|XP_009770851.1| (PREDICTED: uncharacterized protein LOC104221478, partial [Nicotiana sylvestris])

HSP 1 Score: 119.0 bits (297), Expect = 4.7e-24
Identity = 57/88 (64.77%), Postives = 62/88 (70.45%), Query Frame = 1


Query: 4   GSNGHHSFSKGLNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNE 63
           G        + LN  MKEVVKKE+IKWLD G+ +PISDS WVSPIQCV KK  MTVVKNE
Sbjct: 151 GHKPSREHQRRLNPNMKEVVKKEVIKWLDAGIIFPISDSNWVSPIQCVPKKGGMTVVKNE 210

Query: 64  QNELILMRTIMRWRICMDYHKLNAVTNK 92
            NELI  RT+  WRICMDY KLN  T K
Sbjct: 211 NNELISTRTVTGWRICMDYKKLNTATRK 238

[Close]

BLAST of MELO3C003016 vs. NCBI nr
Match: gi|848883477|ref|XP_012842039.1| (PREDICTED: uncharacterized protein LOC105962282 [Erythranthe guttata])

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-24
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  MKEVVKKEIIKWLD G+ +PISDS WVSP+QCV KK  MTV+KNE+NELI  RT+ 
Sbjct: 477 LNPIMKEVVKKEIIKWLDAGIIFPISDSAWVSPVQCVPKKGGMTVIKNEKNELIPSRTVT 536

Query: 75  RWRICMDYHKLNAVTNK 92
            WRICMDY KLN  T K
Sbjct: 537 GWRICMDYRKLNKATRK 553

[Close]

BLAST of MELO3C003016 vs. NCBI nr
Match: gi|848920457|ref|XP_012857123.1| (PREDICTED: uncharacterized protein LOC105976393 [Erythranthe guttata])

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-24
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  MKEVVKKEIIKWLD G+ +PISDS WVSP+QCV KK  MTV+KNE+NELI  RT+ 
Sbjct: 463 LNPIMKEVVKKEIIKWLDAGIIFPISDSAWVSPVQCVPKKGGMTVIKNEKNELIPSRTVT 522

Query: 75  RWRICMDYHKLNAVTNK 92
            WRICMDY KLN  T K
Sbjct: 523 GWRICMDYRKLNKATRK 539

[Close]

BLAST of MELO3C003016 vs. NCBI nr
Match: gi|848912141|ref|XP_012854372.1| (PREDICTED: uncharacterized protein LOC105973875 [Erythranthe guttata])

HSP 1 Score: 118.2 bits (295), Expect = 8.0e-24
Identity = 55/77 (71.43%), Postives = 61/77 (79.22%), Query Frame = 1


Query: 15  LNLAMKEVVKKEIIKWLDMGVTYPISDSEWVSPIQCVRKKSRMTVVKNEQNELILMRTIM 74
           LN  MKEVVKKEIIKWLD G+ +PISDS WVSP+QCV KK  MTV+KNE+NELI  RT+ 
Sbjct: 271 LNPIMKEVVKKEIIKWLDAGIIFPISDSAWVSPVQCVPKKGGMTVIKNEKNELIPSRTVT 330

Query: 75  RWRICMDYHKLNAVTNK 92
            WRICMDY KLN  T K
Sbjct: 331 GWRICMDYRKLNKATRK 347

The following BLAST results are available for this feature:

BLAST of MELO3C003016 vs. TrEMBL


Match Name	E-value	Identity	Description
M1DJA9_SOLTU	1.2e-21	64.94	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039541 PE=4 SV=1	[more]
A0A151SYU5_CAJCA	4.4e-21	66.23	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_...	[more]
A0A151QTE7_CAJCA	1.7e-20	63.64	Transposon Ty3-I Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_045544 PE=4 SV=1	[more]
A0A151QRK4_CAJCA	1.7e-20	64.94	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cajanus cajan GN=KK1_...	[more]
M1DBA5_SOLTU	3.7e-20	62.34	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035801 PE=4 SV=1	[more]

BLAST of MELO3C003016 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|848869888\|ref\|XP_012835563.1\|	1.2e-24	72.73	PREDICTED: uncharacterized protein LOC105956264 [Erythranthe guttata]	[more]
gi\|698556791\|ref\|XP_009770851.1\|	4.7e-24	64.77	PREDICTED: uncharacterized protein LOC104221478, partial [Nicotiana sylvestris]	[more]
gi\|848883477\|ref\|XP_012842039.1\|	8.0e-24	71.43	PREDICTED: uncharacterized protein LOC105962282 [Erythranthe guttata]	[more]
gi\|848920457\|ref\|XP_012857123.1\|	8.0e-24	71.43	PREDICTED: uncharacterized protein LOC105976393 [Erythranthe guttata]	[more]
gi\|848912141\|ref\|XP_012854372.1\|	8.0e-24	71.43	PREDICTED: uncharacterized protein LOC105973875 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003016T1	MELO3C003016T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.10.10.10		coord: 15..91 score: 1.4
None	No IPR available	unknown	SSF56672	DNA/RNA polymerases	coord: 15..90 score: 2.89

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003016	Cucurbita pepo (Zucchini)	cpemeB352
MELO3C003016	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003016	Cucumber (Gy14) v2	cgybmeB294
MELO3C003016	Cucumber (Chinese Long) v3	cucmeB351
MELO3C003016	Watermelon (97103) v2	mewmbB020
MELO3C003016	Cucumber (Gy14) v1	cgymeB419
MELO3C003016	Cucurbita maxima (Rimu)	cmameB632
MELO3C003016	Cucurbita moschata (Rifu)	cmomeB251
MELO3C003016	Wild cucumber (PI 183967)	cpimeB343
MELO3C003016	Cucumber (Chinese Long) v2	cumeB350
MELO3C003016	Watermelon (Charleston Gray)	mewcgB023