MELO3C003012 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003012
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	1-deoxy-D-xylulose 5-phosphate reductoisomerase
Location	chr9 : 9852950 .. 9853375 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAGAAAAAGAGAAGAGGAGGAAAAAAGGAGAAAAGTAAAAGGTCGTGAGCAAGATGATCGTTTTTGTCAAGTGTTTAAAGAGAAAAAGAAAAATGTCGAATCCTTGGCGGAGACCAAAACCAAAATGGCAGAAATCCAAACCGACAAGAAAAAGAAACAAACAATGCTCGTAGACCTAAGTGAGCAAGTGGAGAGTGTGACGATGAGGAACAAGGTTGTTGCGCATCAAGAGGTTGACCGCCTGGATGTTGTGGCGGTAGAATTCAGTCAAAAAATTGAGAGGATGAGCCCATTAGAGCTAAGGCTGAGGCCTAAAGAACGAGGGCTTGTAAGCGCCACTCAGCCAAAGAAAGACAAGAATAAGGTAGTGACATCCAAGCTTGAAGATGTCCAAAAAGGAAGTAAGATGAGGGCCTAG

mRNA sequence

ATGGAGAAAAGAAAAAGAGAAGAGGAGGAAAAAAGGAGAAAAGTAAAAGGTCGTGAGCAAGATGATCGTTTTTGTCAAGTGTTTAAAGAGAAAAAGAAAAATGTCGAATCCTTGGCGGAGACCAAAACCAAAATGGCAGAAATCCAAACCGACAAGAAAAAGAAACAAACAATGCTCGTAGACCTAAGTGAGCAAGTGGAGAGTGTGACGATGAGGAACAAGGTTGTTGCGCATCAAGAGGTTGACCGCCTGGATGTTGTGGCGGTAGAATTCAGTCAAAAAATTGAGAGGATGAGCCCATTAGAGCTAAGGCTGAGGCCTAAAGAACGAGGGCTTGTAAGCGCCACTCAGCCAAAGAAAGACAAGAATAAGGTAGTGACATCCAAGCTTGAAGATGTCCAAAAAGGAAGTAAGATGAGGGCCTAG

Coding sequence (CDS)

ATGGAGAAAAGAAAAAGAGAAGAGGAGGAAAAAAGGAGAAAAGTAAAAGGTCGTGAGCAAGATGATCGTTTTTGTCAAGTGTTTAAAGAGAAAAAGAAAAATGTCGAATCCTTGGCGGAGACCAAAACCAAAATGGCAGAAATCCAAACCGACAAGAAAAAGAAACAAACAATGCTCGTAGACCTAAGTGAGCAAGTGGAGAGTGTGACGATGAGGAACAAGGTTGTTGCGCATCAAGAGGTTGACCGCCTGGATGTTGTGGCGGTAGAATTCAGTCAAAAAATTGAGAGGATGAGCCCATTAGAGCTAAGGCTGAGGCCTAAAGAACGAGGGCTTGTAAGCGCCACTCAGCCAAAGAAAGACAAGAATAAGGTAGTGACATCCAAGCTTGAAGATGTCCAAAAAGGAAGTAAGATGAGGGCCTAG

Protein sequence

MEKRKREEEEKRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLVDLSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKDKNKVVTSKLEDVQKGSKMRA*

Homology

[Close]

BLAST of MELO3C003012 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.9e-16
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 11  KRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLVDLSEQVESVT 70
           KR K K RE+D+   Q+  +K+K+V  L + K+K+AE++  K+ K   L DLSEQV  V 
Sbjct: 5   KREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVA 64

Query: 71  MRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKDKNKVVTSKL 130
             N+     E+D LD+V  E S++IERMSP E   + ++ GL+S     K + K  TSK 
Sbjct: 65  AVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSKQ 124

Query: 131 EDVQKG 137
           +  +KG
Sbjct: 125 KGGKKG 130

[Close]

BLAST of MELO3C003012 vs. TrEMBL
Match: A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 42  KTKMAEIQTDKKKKQTMLVDLSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPL 101
           + K A+IQT KKKK   L  LS+++ESV +R+K    +EVDRL VV  E  ++IERMSPL
Sbjct: 2   RLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPL 61

Query: 102 ELRLRPKERGLVSATQPKKDKNKVVTSKLEDVQKGSKMRA 142
           E R+R +E  L+  T+ KK K  V  SK ED Q    + A
Sbjct: 62  EPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]

BLAST of MELO3C003012 vs. TrEMBL
Match: A0A0A0KDX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G160700 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-09
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 2   EKRKREEEEKRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLVD 61
           EKR++EE ++  +   R++D  F ++ KEK+++V SLAE K+K+A+IQT KK KQ  L  
Sbjct: 85  EKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEK 144

Query: 62  LSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKD 121
           L ++V S                     E ++ +  MSP E RL  ++  L++A + KK 
Sbjct: 145 LDDRVASGGSHG------------YSGEELTRDLGSMSPEETRLGLEDPRLINAKERKKG 195

Query: 122 KNK 125
           K+K
Sbjct: 205 KSK 195

[Close]

BLAST of MELO3C003012 vs. TrEMBL
Match: A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 52  KKKKQTMLVDLSEQVES---------VTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLE 111
           KKK + ++V+  E+ E+            + KV  ++EVDRL VV  +F ++ ER SPL+
Sbjct: 46  KKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLK 105

Query: 112 LRLRPKERGLVSATQPKKDKNKVVTSKLEDVQKGSKMRA 142
            R  PKE  LV  +QPKK K +  TS+LEDV++     A
Sbjct: 106 PRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSA 144

[Close]

BLAST of MELO3C003012 vs. TrEMBL
Match: A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-06
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 1


Query: 79  QEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKDKNKVVTSK 130
           QEVDRL VVA E  ++IERMSPLE RL+PK+ GLV     KK K KV  S+
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]

BLAST of MELO3C003012 vs. NCBI nr
Match: gi|659102436|ref|XP_008452128.1| (PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 58/132 (43.94%), Postives = 85/132 (64.39%), Query Frame = 1


Query: 1   MEKRKREEEEKRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLV 60
           ME+++  E+ K +K +   +D R CQ F+EKKKNVESLAE K K+A+IQT KK +   L 
Sbjct: 1   MEEKQNREKTKAKKTRKEGEDARLCQTFQEKKKNVESLAEMKEKLAKIQTAKKVETKELA 60

Query: 61  DLSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKK 120
              +QVE + M+N+   +Q+V+ L+VVA EF +++  +SPL+ RL P+  GL +    K 
Sbjct: 61  KFDDQVEGLEMKNEATENQKVNCLEVVAAEFQEEVPNISPLKPRLSPEASGLRAIKTKKT 120

Query: 121 DKNKVVTSKLED 133
            K K  TSK +D
Sbjct: 121 KKTKPGTSKPKD 132

[Close]

BLAST of MELO3C003012 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-15
Identity = 51/126 (40.48%), Postives = 75/126 (59.52%), Query Frame = 1


Query: 11  KRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLVDLSEQVESVT 70
           KR K K RE+D+   Q+  +K+K+V  L + K+K+AE++  K+ K   L DLSEQV  V 
Sbjct: 5   KREKEKAREEDEHLRQLSTKKRKSVTFLGDAKSKLAEVRAAKQGKHDTLADLSEQVNRVA 64

Query: 71  MRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKDKNKVVTSKL 130
             N+     E+D LD+V  E S++IERMSP E   + ++ GL+S     K + K  TSK 
Sbjct: 65  AVNQTAKQHEIDHLDIVVEELSREIERMSPTESPGQIEDPGLLSTKGLLKRQTKAGTSKQ 124

Query: 131 EDVQKG 137
           +  +KG
Sbjct: 125 KGGKKG 130

[Close]

BLAST of MELO3C003012 vs. NCBI nr
Match: gi|700202590|gb|KGN57723.1| (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1


Query: 42  KTKMAEIQTDKKKKQTMLVDLSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPL 101
           + K A+IQT KKKK   L  LS+++ESV +R+K    +EVDRL VV  E  ++IERMSPL
Sbjct: 2   RLKFAKIQTSKKKKLEELAVLSKRIESVVVRSKAADEEEVDRLKVVVAELDKEIERMSPL 61

Query: 102 ELRLRPKERGLVSATQPKKDKNKVVTSKLEDVQKGSKMRA 142
           E R+R +E  L+  T+ KK K  V  SK ED Q    + A
Sbjct: 62  EPRIRLEELRLIDPTESKKGKENVGASKSEDAQTSELLSA 101

[Close]

BLAST of MELO3C003012 vs. NCBI nr
Match: gi|700191795|gb|KGN46999.1| (hypothetical protein Csa_6G160700 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 1


Query: 2   EKRKREEEEKRRKVKGREQDDRFCQVFKEKKKNVESLAETKTKMAEIQTDKKKKQTMLVD 61
           EKR++EE ++  +   R++D  F ++ KEK+++V SLAE K+K+A+IQT KK KQ  L  
Sbjct: 85  EKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEK 144

Query: 62  LSEQVESVTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLELRLRPKERGLVSATQPKKD 121
           L ++V S                     E ++ +  MSP E RL  ++  L++A + KK 
Sbjct: 145 LDDRVASGGSHG------------YSGEELTRDLGSMSPEETRLGLEDPRLINAKERKKG 195

Query: 122 KNK 125
           K+K
Sbjct: 205 KSK 195

[Close]

BLAST of MELO3C003012 vs. NCBI nr
Match: gi|700194396|gb|KGN49573.1| (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 6.7e-08
Identity = 39/99 (39.39%), Postives = 57/99 (57.58%), Query Frame = 1


Query: 52  KKKKQTMLVDLSEQVES---------VTMRNKVVAHQEVDRLDVVAVEFSQKIERMSPLE 111
           KKK + ++V+  E+ E+            + KV  ++EVDRL VV  +F ++ ER SPL+
Sbjct: 46  KKKVEEVVVESQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLK 105

Query: 112 LRLRPKERGLVSATQPKKDKNKVVTSKLEDVQKGSKMRA 142
            R  PKE  LV  +QPKK K +  TS+LEDV++     A
Sbjct: 106 PRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSA 144

The following BLAST results are available for this feature:

BLAST of MELO3C003012 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9V9_CUCSA	7.9e-16	40.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1	[more]
A0A0A0L7E0_CUCSA	1.1e-14	48.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263210 PE=4 SV=1	[more]
A0A0A0KDX1_CUCSA	7.2e-09	34.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G160700 PE=4 SV=1	[more]
A0A0A0KJ65_CUCSA	4.7e-08	39.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G003650 PE=4 SV=1	[more]
A0A0A0KAB8_CUCSA	3.3e-06	60.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G119890 PE=4 SV=1	[more]

BLAST of MELO3C003012 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102436\|ref\|XP_008452128.1\|	1.4e-21	43.94	PREDICTED: uncharacterized protein LOC103493227 [Cucumis melo]	[more]
gi\|700202631\|gb\|KGN57764.1\|	1.1e-15	40.48	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
gi\|700202590\|gb\|KGN57723.1\|	1.6e-14	48.00	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]
gi\|700191795\|gb\|KGN46999.1\|	1.0e-08	34.96	hypothetical protein Csa_6G160700 [Cucumis sativus]	[more]
gi\|700194396\|gb\|KGN49573.1\|	6.7e-08	39.39	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003012T1	MELO3C003012T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003012	Cucurbita maxima (Rimu)	cmameB632
MELO3C003012	Cucurbita moschata (Rifu)	cmomeB251
MELO3C003012	Wild cucumber (PI 183967)	cpimeB343
MELO3C003012	Cucumber (Chinese Long) v2	cumeB350
MELO3C003012	Watermelon (Charleston Gray)	mewcgB023
MELO3C003012	Cucurbita pepo (Zucchini)	cpemeB352
MELO3C003012	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003012	Cucumber (Gy14) v2	cgybmeB294
MELO3C003012	Cucumber (Chinese Long) v3	cucmeB351
MELO3C003012	Watermelon (97103) v2	mewmbB020
MELO3C003012	Cucumber (Gy14) v1	cgymeB419