MELO3C003007 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C003007
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Transmembrane 9 superfamily member 4
Location	chr9 : 9790631 .. 9790984 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGATACTAGTGAACATAAGCGAGCACATCATAGCATGGGTCAAGCATCCTTGCGGAGCAAGACCTTTCCCGCACCTGATTGAGAAATTGTGCTTAAAGGCATGTTCGGCGTTAGACAAACATCCTCAGGTAGAAGTGAAGGATAGGATTTGGTCCTCCTTAACCTTTCACTGCATAATTGTCATCCACAAGAACAAGTCTAAGCTAAAATGCTTCAAAACCAAACAATATGGTAAATCAGAGATTAAAGAAGTGGATGATGAAGATGAAGAAGAGGAAAAGGAAGATGATATCCCACTAAAACGCAAACGGCAAGACAAGAAGGAGGCCTCAAATCAAAGAGAGTAA

mRNA sequence

ATGGAAGAGATACTAGTGAACATAAGCGAGCACATCATAGCATGGGTCAAGCATCCTTGCGGAGCAAGACCTTTCCCGCACCTGATTGAGAAATTGTGCTTAAAGGCATGTTCGGCGTTAGACAAACATCCTCAGGTAGAAGTGAAGGATAGGATTTGGTCCTCCTTAACCTTTCACTGCATAATTGTCATCCACAAGAACAAGTCTAAGCTAAAATGCTTCAAAACCAAACAATATGGTAAATCAGAGATTAAAGAAGTGGATGATGAAGATGAAGAAGAGGAAAAGGAAGATGATATCCCACTAAAACGCAAACGGCAAGACAAGAAGGAGGCCTCAAATCAAAGAGAGTAA

Coding sequence (CDS)

ATGGAAGAGATACTAGTGAACATAAGCGAGCACATCATAGCATGGGTCAAGCATCCTTGCGGAGCAAGACCTTTCCCGCACCTGATTGAGAAATTGTGCTTAAAGGCATGTTCGGCGTTAGACAAACATCCTCAGGTAGAAGTGAAGGATAGGATTTGGTCCTCCTTAACCTTTCACTGCATAATTGTCATCCACAAGAACAAGTCTAAGCTAAAATGCTTCAAAACCAAACAATATGGTAAATCAGAGATTAAAGAAGTGGATGATGAAGATGAAGAAGAGGAAAAGGAAGATGATATCCCACTAAAACGCAAACGGCAAGACAAGAAGGAGGCCTCAAATCAAAGAGAGTAA

Protein sequence

MEEILVNISEHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKDRIWSSLTFHCIIVIHKNKSKLKCFKTKQYGKSEIKEVDDEDEEEEKEDDIPLKRKRQDKKEASNQRE*

Homology

[Close]

BLAST of MELO3C003007 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.3e-31
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MEEILVNI----SEHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKDRIWSSL 60
           M++ILVNI    S HIIA VKHP GARPF +LIE+LCL+AC  L+K PQVEVKD IW   
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  TFHCIIVIHKNKSKLKCFKTKQYGKSEIKEVDDED-EEEEKEDDIPLKRKRQDKKE 112
           T H II IHKNK+K+KC KTK+ G   +KE+DD+D EEE+K+D+IP KRKRQDK++
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTKE-GCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKED 172

[Close]

BLAST of MELO3C003007 vs. TrEMBL
Match: A0A0A0LHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-13
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 1  MEEILVNI----SEHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKDRIWSSL 60
          M+EI VNI    SEHI+AWVK P   R F HLI KL LKAC AL+K PQV+V+D +W+ L
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 TFHCIIVIHKNKSKLK 73
          T HCII   +N+SK K
Sbjct: 71 TLHCIIRYSQNQSKDK 86

[Close]

BLAST of MELO3C003007 vs. TrEMBL
Match: A0A0A0LAY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.3e-07
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 1   MEEILVNIS----EHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKD 51
           MEEI VN+     +HI+AW+KHP   RPF HLIEKLCLKAC    K  Q++V+D
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVED 178

[Close]

BLAST of MELO3C003007 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.1e-31
Identity = 74/116 (63.79%), Postives = 91/116 (78.45%), Query Frame = 1


Query: 1   MEEILVNI----SEHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKDRIWSSL 60
           M++ILVNI    S HIIA VKHP GARPF +LIE+LCL+AC  L+K PQVEVKD IW   
Sbjct: 58  MKKILVNIGKIISNHIIALVKHPRGARPFSYLIEQLCLRACLMLEKLPQVEVKDGIWLPS 117

Query: 61  TFHCIIVIHKNKSKLKCFKTKQYGKSEIKEVDDED-EEEEKEDDIPLKRKRQDKKE 112
           T H II IHKNK+K+KC KTK+ G   +KE+DD+D EEE+K+D+IP KRKRQDK++
Sbjct: 118 TLHRIIAIHKNKAKIKCLKTKE-GCKVVKEIDDDDVEEEDKKDNIPQKRKRQDKED 172

[Close]

BLAST of MELO3C003007 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.4e-21
Identity = 52/78 (66.67%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 40  LDKHPQVEVKDRIWSSLTFHCIIVIHKNKSKLKCFKTKQYGKSEIKEVDDEDEEEEKEDD 99
           LDK  QV+VKD I SS T HCII IHKNK+KLKC KTKQ GKS++K VDDEDEEE+++DD
Sbjct: 2   LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDD 61

Query: 100 IPLKRKRQDKKEASNQRE 118
           +PLKRKRQ ++EA   ++
Sbjct: 62  VPLKRKRQGEEEALGSKK 79

[Close]

BLAST of MELO3C003007 vs. NCBI nr
Match: gi|700206371|gb|KGN61490.1| (hypothetical protein Csa_2G145890 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.4e-13
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 1  MEEILVNI----SEHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKDRIWSSL 60
          M+EI VNI    SEHI+AWVK P   R F HLI KL LKAC AL+K PQV+V+D +W+ L
Sbjct: 11 MKEISVNIGKIISEHILAWVKLPQETRFFLHLINKLRLKACLALEKLPQVKVEDGVWTPL 70

Query: 61 TFHCIIVIHKNKSKLK 73
          T HCII   +N+SK K
Sbjct: 71 TLHCIIRYSQNQSKDK 86

[Close]

BLAST of MELO3C003007 vs. NCBI nr
Match: gi|700202971|gb|KGN58104.1| (hypothetical protein Csa_3G511970 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 1   MEEILVNIS----EHIIAWVKHPCGARPFPHLIEKLCLKACSALDKHPQVEVKD 51
           MEEI VN+     +HI+AW+KHP   RPF HLIEKLCLKAC    K  Q++V+D
Sbjct: 126 MEEIPVNVGEIICKHILAWIKHPHDGRPFLHLIEKLCLKAC-LTKKESQIKVED 178

The following BLAST results are available for this feature:

BLAST of MELO3C003007 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAN0_CUCSA	4.3e-31	63.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1	[more]
A0A0A0LHW9_CUCSA	3.1e-13	59.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G145890 PE=4 SV=1	[more]
A0A0A0LAY9_CUCSA	7.3e-07	57.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G511970 PE=4 SV=1	[more]

BLAST of MELO3C003007 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202594\|gb\|KGN57727.1\|	6.1e-31	63.79	hypothetical protein Csa_3G263250 [Cucumis sativus]	[more]
gi\|659123193\|ref\|XP_008461541.1\|	3.4e-21	66.67	PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo]	[more]
gi\|700206371\|gb\|KGN61490.1\|	4.4e-13	59.21	hypothetical protein Csa_2G145890 [Cucumis sativus]	[more]
gi\|700202971\|gb\|KGN58104.1\|	1.1e-06	57.41	hypothetical protein Csa_3G511970 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C003007T1	MELO3C003007T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C003007	Watermelon (Charleston Gray)	mewcgB023
MELO3C003007	Cucurbita pepo (Zucchini)	cpemeB352
MELO3C003007	Bottle gourd (USVL1VR-Ls)	lsimeB007
MELO3C003007	Cucumber (Gy14) v2	cgybmeB294
MELO3C003007	Cucumber (Chinese Long) v3	cucmeB351
MELO3C003007	Watermelon (97103) v2	mewmbB020
MELO3C003007	Cucumber (Gy14) v1	cgymeB419
MELO3C003007	Cucurbita maxima (Rimu)	cmameB632
MELO3C003007	Cucurbita moschata (Rifu)	cmomeB251
MELO3C003007	Wild cucumber (PI 183967)	cpimeB343
MELO3C003007	Cucumber (Chinese Long) v2	cumeB350