MELO3C003000 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C003000
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionTy3/gypsy retrotransposon protein
Locationchr9 : 9633764 .. 9634315 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCATTCATTAGGGGTCACAAAAGTGTATTGGAGGAAGCTTACCATGACATTTTACAGGGGAGGTCAAAAGGTGATACTCAAGGGTGATCCTAGCTTGACTAAGGCAAGAGTAAGCTTAAAGAGTATGATGGAATCATGGTCCTCATTTGATCTGGGTTTCTTAGTGGAATGTAGGGCTTTGGAGGGAGCATGAATTTTGCAGAATTTTATGGAGTTGATGACATTCTCACTGTGGACAAGTCTATTCCAGAATTATTGGGAAGGTATGAGGATGTTTTTGATTGGCCTGAAGAGTTACCTCCTAAGGGAGGAATTGAGCACCATATACATCTAAAGAACAGCACTAATCCTATTAATGTAAGGCTTTATCGTTATGCATATCAACAGAAAGAGGAAATGGAGAAATTAGTAGATGAAATGCTTGCTTCAGGGGTGATTCGGCTGAGTACTAGCCCTTACCCGAGTCCTGTTTTATTAGTTAAGAAAAAAGATGGTAGTTGGAGATTCTGCGTTGATTACCAGGCCCATAATACTGCAATATGGTAG

mRNA sequence

ATGGCTCCATTCATTAGGGGTCACAAAAGTGTATTGGAGGAAGCTTACCATGACATTTTACAGGGGAGGTCAAAAGAATTTTATGGAGTTGATGACATTCTCACTGTGGACAAGTCTATTCCAGAATTATTGGGAAGGTATGAGGATGTTTTTGATTGGCCTGAAGAGTTACCTCCTAAGGGAGGAATTGAGCACCATATACATCTAAAGAACAGCACTAATCCTATTAATGTAAGGCTTTATCGTTATGCATATCAACAGAAAGAGGAAATGGAGAAATTAGTAGATGAAATGCTTGCTTCAGGGGTGATTCGGCTGAGTACTAGCCCTTACCCGAGTCCTGTTTTATTAGTTAAGAAAAAAGATGGTAGTTGGAGATTCTGCGTTGATTACCAGGCCCATAATACTGCAATATGGTAG

Coding sequence (CDS)

ATGGCTCCATTCATTAGGGGTCACAAAAGTGTATTGGAGGAAGCTTACCATGACATTTTACAGGGGAGGTCAAAAGAATTTTATGGAGTTGATGACATTCTCACTGTGGACAAGTCTATTCCAGAATTATTGGGAAGGTATGAGGATGTTTTTGATTGGCCTGAAGAGTTACCTCCTAAGGGAGGAATTGAGCACCATATACATCTAAAGAACAGCACTAATCCTATTAATGTAAGGCTTTATCGTTATGCATATCAACAGAAAGAGGAAATGGAGAAATTAGTAGATGAAATGCTTGCTTCAGGGGTGATTCGGCTGAGTACTAGCCCTTACCCGAGTCCTGTTTTATTAGTTAAGAAAAAAGATGGTAGTTGGAGATTCTGCGTTGATTACCAGGCCCATAATACTGCAATATGGTAG

Protein sequence

MAPFIRGHKSVLEEAYHDILQGRSKEFYGVDDILTVDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTAIW*
Homology
[Close]
BLAST of MELO3C003000 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08
Identity = 35/104 (33.65%), Postives = 53/104 (50.96%), Query Frame = 1 

Query: 43  LLGRYEDVFDWPEELPPKGGIEHHIHLK-----NSTNPINVRLYRYAYQQKEEMEKLVDE 102
           LLG +  +F+     PP  G+     +K     N+ +PI  + Y Y    + E+E+ +DE
Sbjct: 91  LLGEFPRIFE-----PPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQIDE 150

Query: 103 MLASGVIRLSTSPYPSPVLLVKKK-----DGSWRFCVDYQAHNT 137
           +L  G+IR S SPY SP+ +V KK     +  +R  VD++  NT
Sbjct: 151 LLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNT 189

[Close]
BLAST of MELO3C003000 vs. Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 56  ELPPKGG------IEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLASGVIRLSTS 115
           +LPP+        ++H I +K       ++ Y    + ++E+ K+V ++L +  I  S S
Sbjct: 571 DLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKS 630

Query: 116 PYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
           P  SPV+LV KKDG++R CVDY+  N A
Sbjct: 631 PCSSPVVLVPKKDGTFRLCVDYRTLNKA 658

[Close]
BLAST of MELO3C003000 vs. Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-07
Identity = 31/88 (35.23%), Postives = 48/88 (54.55%), Query Frame = 1 

Query: 56  ELPPKGG------IEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLASGVIRLSTS 115
           +LPP+        ++H I +K       ++ Y    + ++E+ K+V ++L +  I  S S
Sbjct: 597 DLPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKS 656

Query: 116 PYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
           P  SPV+LV KKDG++R CVDY+  N A
Sbjct: 657 PCSSPVVLVPKKDGTFRLCVDYRTLNKA 684

[Close]
BLAST of MELO3C003000 vs. TrEMBL
Match: A5BZW2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-27
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 36  VDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLV 95
           V + + EL+  ++D+F  P +LPP+  IEH I LK  T+PINVR YRYAY QK+E+E+ V
Sbjct: 420 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 479

Query: 96  DEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
            +ML SG+IR S+SP+ SPVLLVKKKDGSWRFC DY+A N A
Sbjct: 480 SDMLNSGLIRPSSSPFSSPVLLVKKKDGSWRFCTDYRALNXA 521

[Close]
BLAST of MELO3C003000 vs. TrEMBL
Match: A5AJJ1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 60/102 (58.82%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 36  VDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLV 95
           V + + EL+  ++D+F  P +LPP+  IEH I LK  T+PINVR YRYAY QK+E+E+ V
Sbjct: 408 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 467

Query: 96  DEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
            +ML SG+IR S+SP+ SPVLL KKKDGSWRFC DY+A N A
Sbjct: 468 SDMLNSGLIRPSSSPFSSPVLLEKKKDGSWRFCTDYRALNAA 509

[Close]
BLAST of MELO3C003000 vs. TrEMBL
Match: J3SDF5_BETVU (Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.1e-25
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1 

Query: 36  VDKSIP----ELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEM 95
           V++ IP    EL+ R+E VF+ P  LPP+ G EH I LK  +NP+ VR YRY   QK+E+
Sbjct: 648 VEQEIPPFLQELMRRFEGVFETPVGLPPRRGHEHAIVLKEGSNPVGVRPYRYPQFQKDEI 707

Query: 96  EKLVDEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHN 136
           E+L+ EMLA+G+I+ STSP+ SPV+LVKKKDGSWRFCVDY+A N
Sbjct: 708 ERLIKEMLAAGIIQPSTSPFSSPVILVKKKDGSWRFCVDYRALN 751

[Close]
BLAST of MELO3C003000 vs. TrEMBL
Match: M4DN30_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.4e-25
Identity = 58/95 (61.05%), Postives = 72/95 (75.79%), Query Frame = 1 

Query: 43  LLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLASG 102
           +L  +  +F  P  LPP   IEH+I LK  T+PINVR YRYAY QK+E+E+ V EML +G
Sbjct: 533 ILDEFNGIFQCPTGLPPPRDIEHNITLKEGTDPINVRPYRYAYFQKDEIERQVTEMLDAG 592

Query: 103 VIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
           +IR S+SP+ SPVLLVKKKDGSWRFC DY+A N+A
Sbjct: 593 IIRSSSSPFSSPVLLVKKKDGSWRFCTDYRALNSA 627

[Close]
BLAST of MELO3C003000 vs. TrEMBL
Match: A0A0L9V4Z2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g083500 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.2e-25
Identity = 60/95 (63.16%), Postives = 70/95 (73.68%), Query Frame = 1 

Query: 43  LLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLASG 102
           LL +YE VF  P  LPP  G+ HHI LK   +P+NVR YRY +  KEE+E+ V EML +G
Sbjct: 564 LLSKYEKVFADPVGLPPDRGMVHHIPLKEGIDPVNVRPYRYPHVMKEEIEQQVQEMLKTG 623

Query: 103 VIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
           VIR S SPY SPV+LVKKKDGSWRFCVDY+A N A
Sbjct: 624 VIRPSHSPYSSPVILVKKKDGSWRFCVDYRALNRA 658

[Close]
BLAST of MELO3C003000 vs. NCBI nr
Match: gi|659115474|ref|XP_008457576.1| (PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-28
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 42  ELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLVDEMLAS 101
           E +G   DVF+WPE LP K GI+HHIHLK  TN +NVR Y YA+QQKE++E+L DEMLAS
Sbjct: 134 EGVGVILDVFEWPETLPSKKGIKHHIHLKQGTNLVNVRSYHYAHQQKEKIERLADEMLAS 193

Query: 102 GVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHN 136
            +IR STSP  SPVLL +KKDGSWRFCVDYQ  N
Sbjct: 194 RIIRPSTSPNSSPVLLARKKDGSWRFCVDYQTLN 227

[Close]
BLAST of MELO3C003000 vs. NCBI nr
Match: gi|727603007|ref|XP_010474544.1| (PREDICTED: uncharacterized protein LOC104754084 [Camelina sativa])

HSP 1 Score: 131.3 bits (329), Expect = 1.3e-27
Identity = 63/105 (60.00%), Postives = 77/105 (73.33%), Query Frame = 1 

Query: 33  ILTVDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEME 92
           +L V+  +  L+  ++ +F  P+ LPP+  IEH I LK  TNP+NVR YRYAY QKEE+E
Sbjct: 393 LLPVEPEMQALIQEFDALFHTPDGLPPRRAIEHRIPLKEGTNPVNVRPYRYAYFQKEEIE 452

Query: 93  KLVDEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
           K V EML SG+IR S SP+ SPVLLVKKKDGSWRFC DY+A N A
Sbjct: 453 KQVSEMLTSGIIRPSCSPFSSPVLLVKKKDGSWRFCTDYRALNAA 497

[Close]
BLAST of MELO3C003000 vs. NCBI nr
Match: gi|731440391|ref|XP_010646564.1| (PREDICTED: uncharacterized protein LOC104878232 [Vitis vinifera])

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-27
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 36  VDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLV 95
           V + + EL+  ++D+F  P +LPP+  IEH I LK  T+PINVR YRYAY QK+E+E+ V
Sbjct: 498 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 557

Query: 96  DEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
            +ML SG+IR S+SP+ SPVLLVKKKDGSWRFC DY+A N A
Sbjct: 558 SDMLNSGLIRPSSSPFSSPVLLVKKKDGSWRFCTDYRALNAA 599

[Close]
BLAST of MELO3C003000 vs. NCBI nr
Match: gi|731410617|ref|XP_010657629.1| (PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera])

HSP 1 Score: 129.8 bits (325), Expect = 3.7e-27
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 36  VDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLV 95
           V + + EL+  ++D+F  P +LPP+  IEH I LK  T+PINVR YRYAY QK+E+E+ V
Sbjct: 440 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 499

Query: 96  DEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
            +ML SG+IR S+SP+ SPVLLVKKKDGSWRFC DY+A N A
Sbjct: 500 SDMLNSGLIRPSSSPFSSPVLLVKKKDGSWRFCTDYRALNAA 541

[Close]
BLAST of MELO3C003000 vs. NCBI nr
Match: gi|147816473|emb|CAN64046.1| (hypothetical protein VITISV_040537 [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 4.9e-27
Identity = 61/102 (59.80%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 36  VDKSIPELLGRYEDVFDWPEELPPKGGIEHHIHLKNSTNPINVRLYRYAYQQKEEMEKLV 95
           V + + EL+  ++D+F  P +LPP+  IEH I LK  T+PINVR YRYAY QK+E+E+ V
Sbjct: 420 VQQELKELIEAFDDIFQAPSQLPPQRDIEHQITLKEGTDPINVRPYRYAYFQKDEIERQV 479

Query: 96  DEMLASGVIRLSTSPYPSPVLLVKKKDGSWRFCVDYQAHNTA 138
            +ML SG+IR S+SP+ SPVLLVKKKDGSWRFC DY+A N A
Sbjct: 480 SDMLNSGLIRPSSSPFSSPVLLVKKKDGSWRFCTDYRALNXA 521

The following BLAST results are available for this feature:
BLAST of MELO3C003000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL5_DROME5.1e-0833.65Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
YG31B_YEAST1.1e-0735.23Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
YI31B_YEAST1.1e-0735.23Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
BLAST of MELO3C003000 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BZW2_VITVI3.4e-2759.80Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040537 PE=4 SV=1[more]
A5AJJ1_VITVI1.3e-2658.82Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043900 PE=4 SV=1[more]
J3SDF5_BETVU1.1e-2558.65Ty3/gypsy retrotransposon protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1[more]
M4DN30_BRARP5.4e-2561.05Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0L9V4Z2_PHAAN9.2e-2563.16Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g083500 PE=4 SV=1[more]
BLAST of MELO3C003000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115474|ref|XP_008457576.1|1.2e-2868.09PREDICTED: uncharacterized protein LOC103497241 [Cucumis melo][more]
gi|727603007|ref|XP_010474544.1|1.3e-2760.00PREDICTED: uncharacterized protein LOC104754084 [Camelina sativa][more]
gi|731440391|ref|XP_010646564.1|3.7e-2759.80PREDICTED: uncharacterized protein LOC104878232 [Vitis vinifera][more]
gi|731410617|ref|XP_010657629.1|3.7e-2759.80PREDICTED: uncharacterized protein LOC104880969 [Vitis vinifera][more]
gi|147816473|emb|CAN64046.1|4.9e-2759.80hypothetical protein VITISV_040537 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU49328melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C003000T1MELO3C003000T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU49328MU49328transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.10.10.10coord: 69..136
score: 1.3
NoneNo IPR availablePANTHERPTHR10178GAG/POL/ENV POLYPROTEINcoord: 55..136
score: 5.5
NoneNo IPR availablePANTHERPTHR10178:SF309SUBFAMILY NOT NAMEDcoord: 55..136
score: 5.5
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 43..137
score: 7.79

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C003000Cucurbita pepo (Zucchini)cpemeB352
MELO3C003000Bottle gourd (USVL1VR-Ls)lsimeB007
MELO3C003000Cucumber (Gy14) v2cgybmeB294
MELO3C003000Cucumber (Chinese Long) v3cucmeB351
MELO3C003000Watermelon (97103) v2mewmbB020
MELO3C003000Cucurbita maxima (Rimu)cmameB632
MELO3C003000Watermelon (Charleston Gray)mewcgB023