MELO3C002990 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C002990
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProtein Ycf2
Locationchr9 : 9435537 .. 9436004 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCAACGTTCCAACCACCACAAACCGATTGGGGACAATGGTGGCGAAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGACAGTGGCACATACGGAATTTAATTCGACAGTACAATTTAAGGCATCCACACAACAGAAAAGGAAAATCACCTACTGTTCCCTTACTAACCCACAACCGGTTTACTCACATGCCCCTGATTCCTGGCCATTTGAACTTTCAACGGATGTTCCTAATTTGGTGGAAAATAATTCTTCTTGTGACACAATTCCCTCCCATACACCCGCATTTACCTCTCCTAATATCCTCCTGGGCCCCACAAAACCCCCTTCACCTTCTTTTAACCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCAACTTGCGAGAAGGATCAAAACACATGAAAACTCCTAAAAATCAGCCACAAACATTCTCTGACTCGGAAGCCTAG

mRNA sequence

ATGGGGTCAACGTTCCAACCACCACAAACCGATTGGGGACAATGGTGGCGAAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGACAGTGGCACATACGGAATTTAATTCGACAGTACAATTTAAGGCATCCACACAACAGAAAAGGAAAATCACCTACTGTTCCCTTACTAACCCACAACCGGTTTACTCACATGCCCCTGATTCCTGGCCATTTGAACTTTCAACGGATGTTCCTAATTTGGTGGAAAATAATTCTTCTTGTGACACAATTCCCTCCCATACACCCGCATTTACCTCTCCTAATATCCTCCTGGGCCCCACAAAACCCCCTTCACCTTCTTTTAACCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCAACTTGCGAGAAGGATCAAAACACATGAAAACTCCTAAAAATCAGCCACAAACATTCTCTGACTCGGAAGCCTAG

Coding sequence (CDS)

ATGGGGTCAACGTTCCAACCACCACAAACCGATTGGGGACAATGGTGGCGAAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGACAGTGGCACATACGGAATTTAATTCGACAGTACAATTTAAGGCATCCACACAACAGAAAAGGAAAATCACCTACTGTTCCCTTACTAACCCACAACCGGTTTACTCACATGCCCCTGATTCCTGGCCATTTGAACTTTCAACGGATGTTCCTAATTTGGTGGAAAATAATTCTTCTTGTGACACAATTCCCTCCCATACACCCGCATTTACCTCTCCTAATATCCTCCTGGGCCCCACAAAACCCCCTTCACCTTCTTTTAACCAGCCATCAATGGCGATGGTTACTTTCCAAAATGGTTTTTCCAACTTGCGAGAAGGATCAAAACACATGAAAACTCCTAAAAATCAGCCACAAACATTCTCTGACTCGGAAGCCTAG

Protein sequence

MGSTFQPPQTDWGQWWRKSNGAVKDSTEPTVAHTEFNSTVQFKASTQQKRKITYCSLTNPQPVYSHAPDSWPFELSTDVPNLVENNSSCDTIPSHTPAFTSPNILLGPTKPPSPSFNQPSMAMVTFQNGFSNLREGSKHMKTPKNQPQTFSDSEA*
Homology
[Close]
BLAST of MELO3C002990 vs. TrEMBL
Match: A0A0A0LHM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-43
Identity = 95/138 (68.84%), Postives = 97/138 (70.29%), Query Frame = 1 

Query: 18  KSNGAVKDSTEPTVAHTEFNSTVQFKASTQQKRKITYCSLTNPQPVYSHAPDSWPFELST 77
           KSNG VKDSTEP  AH E                          P+YSH+PDS PFELST
Sbjct: 4   KSNGVVKDSTEPAAAHME--------------------------PIYSHSPDSQPFELST 63

Query: 78  DVPNLVENNSSCDTIPSHTPAFTSPNILLGPTKPPSPSFNQPSMAMVTFQNGFSNLREGS 137
           D PNLVENNSS DT PSHTPA T  NILLGPTK PSPSFNQPSMAMVTFQNGFSNLREG 
Sbjct: 64  DFPNLVENNSSHDTFPSHTPALTFHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGP 115

Query: 138 KHMKTPKNQPQTFSDSEA 156
           KHM TPKNQPQTFSD EA
Sbjct: 124 KHMATPKNQPQTFSDLEA 115

[Close]
BLAST of MELO3C002990 vs. TrEMBL
Match: A0A0A0KPT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.6e-23
Identity = 67/137 (48.91%), Postives = 80/137 (58.39%), Query Frame = 1 

Query: 19  SNGAVKDSTEPTVAHTEFNSTVQFKASTQQKRKITYCSLTNPQPVYSHAPDSWPFELSTD 78
           ++  V++ST P  A     S     A T QK +                 DS  FE S +
Sbjct: 191 THAVVRESTLPAAASMGIKS-----ALTHQKSR-----------------DSRQFEFSAN 250

Query: 79  VPNLVENNSSCDTIPSHTPAFTSPNILLGPTKPPSPSFNQPSMAMVTFQNGFSNLREGSK 138
            PN V  N  C+ IPSH+PA   PN L+GPTK  SPSFNQPS+AMVTFQ   SNLREG+K
Sbjct: 251 FPNPVAINIPCEQIPSHSPALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSNLREGTK 305

Query: 139 HMKTPKNQPQTFSDSEA 156
           H+ TP+NQ QTFSDSEA
Sbjct: 311 HVATPENQLQTFSDSEA 305

[Close]
BLAST of MELO3C002990 vs. NCBI nr
Match: gi|700206184|gb|KGN61303.1| (hypothetical protein Csa_2G078070 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-43
Identity = 95/138 (68.84%), Postives = 97/138 (70.29%), Query Frame = 1 

Query: 18  KSNGAVKDSTEPTVAHTEFNSTVQFKASTQQKRKITYCSLTNPQPVYSHAPDSWPFELST 77
           KSNG VKDSTEP  AH E                          P+YSH+PDS PFELST
Sbjct: 4   KSNGVVKDSTEPAAAHME--------------------------PIYSHSPDSQPFELST 63

Query: 78  DVPNLVENNSSCDTIPSHTPAFTSPNILLGPTKPPSPSFNQPSMAMVTFQNGFSNLREGS 137
           D PNLVENNSS DT PSHTPA T  NILLGPTK PSPSFNQPSMAMVTFQNGFSNLREG 
Sbjct: 64  DFPNLVENNSSHDTFPSHTPALTFHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGP 115

Query: 138 KHMKTPKNQPQTFSDSEA 156
           KHM TPKNQPQTFSD EA
Sbjct: 124 KHMATPKNQPQTFSDLEA 115

[Close]
BLAST of MELO3C002990 vs. NCBI nr
Match: gi|700195712|gb|KGN50889.1| (hypothetical protein Csa_5G314850 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-23
Identity = 67/137 (48.91%), Postives = 80/137 (58.39%), Query Frame = 1 

Query: 19  SNGAVKDSTEPTVAHTEFNSTVQFKASTQQKRKITYCSLTNPQPVYSHAPDSWPFELSTD 78
           ++  V++ST P  A     S     A T QK +                 DS  FE S +
Sbjct: 191 THAVVRESTLPAAASMGIKS-----ALTHQKSR-----------------DSRQFEFSAN 250

Query: 79  VPNLVENNSSCDTIPSHTPAFTSPNILLGPTKPPSPSFNQPSMAMVTFQNGFSNLREGSK 138
            PN V  N  C+ IPSH+PA   PN L+GPTK  SPSFNQPS+AMVTFQ   SNLREG+K
Sbjct: 251 FPNPVAINIPCEQIPSHSPALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSNLREGTK 305

Query: 139 HMKTPKNQPQTFSDSEA 156
           H+ TP+NQ QTFSDSEA
Sbjct: 311 HVATPENQLQTFSDSEA 305

The following BLAST results are available for this feature:
BLAST of MELO3C002990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHM7_CUCSA2.9e-4368.84Uncharacterized protein OS=Cucumis sativus GN=Csa_2G078070 PE=4 SV=1[more]
A0A0A0KPT1_CUCSA5.6e-2348.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G314850 PE=4 SV=1[more]
BLAST of MELO3C002990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206184|gb|KGN61303.1|4.1e-4368.84hypothetical protein Csa_2G078070 [Cucumis sativus][more]
gi|700195712|gb|KGN50889.1|8.1e-2348.91hypothetical protein Csa_5G314850 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C002990T1MELO3C002990T1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C002990Cucurbita maxima (Rimu)cmameB146
MELO3C002990Cucurbita maxima (Rimu)cmameB715
MELO3C002990Cucurbita moschata (Rifu)cmomeB136
MELO3C002990Cucurbita moschata (Rifu)cmomeB706
MELO3C002990Watermelon (Charleston Gray)mewcgB003
MELO3C002990Watermelon (Charleston Gray)mewcgB023
MELO3C002990Watermelon (97103) v1mewmB004
MELO3C002990Cucurbita pepo (Zucchini)cpemeB742
MELO3C002990Bottle gourd (USVL1VR-Ls)lsimeB164
MELO3C002990Cucumber (Gy14) v2cgybmeB294
MELO3C002990Silver-seed gourdcarmeB0322
MELO3C002990Cucumber (Chinese Long) v3cucmeB351
MELO3C002990Watermelon (97103) v2mewmbB039