MELO3C002985 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002985
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	ATP-dependent Clp protease ATP-binding subunit ClpX
Location	chr9 : 9334475 .. 9334714 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTGGAAATGATCAATTAAAGACAATTGCAAATTGGCCAAAAGAGAAGCGTGTAACAGAGGTCGAATTGCGTGCTGAAGTTGTGAAACAGCTGCAAAATATCCTTGAACTACCAAGCCGAGATAGGGCAAAACTTATGCAAATCCTATTCCATAGTGTGGAGGCCATTGAGGGATTCTTGTCGATTCCAATAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATTAG

mRNA sequence

ATGGAATTTGGAAATGATCAATTAAAGACAATTGCAAATTGGCCAAAAGAGAAGCGTGTAACAGAGGTCGAATTGCGTGCTGAAGTTGTGAAACAGCTGCAAAATATCCTTGAACTACCAAGCCGAGATAGGGCAAAACTTATGCAAATCCTATTCCATAGTGTGGAGGCCATTGAGGGATTCTTGTCGATTCCAATAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATTAG

Coding sequence (CDS)

ATGGAATTTGGAAATGATCAATTAAAGACAATTGCAAATTGGCCAAAAGAGAAGCGTGTAACAGAGGTCGAATTGCGTGCTGAAGTTGTGAAACAGCTGCAAAATATCCTTGAACTACCAAGCCGAGATAGGGCAAAACTTATGCAAATCCTATTCCATAGTGTGGAGGCCATTGAGGGATTCTTGTCGATTCCAATAGAACTTAAATTGGAGTATTGCAATATTCTCTTGCAAAATTAG

Protein sequence

MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGFLSIPIELKLEYCNILLQN*

Homology

[Close]

BLAST of MELO3C002985 vs. TrEMBL
Match: A0A0A0KFW0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.4e-23
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           ME  NDQLK IANW KEKR TEVEL  EVVKQLQ+I EL +RDR KLMQI+FH V+ IEG
Sbjct: 48  MEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEG 107

Query: 61  FLSIPIELKLEYCNILLQN 80
           FLS P +LKLEYC +LL++
Sbjct: 108 FLSCPTKLKLEYCRVLLED 126

[Close]

BLAST of MELO3C002985 vs. TrEMBL
Match: E5GBB1_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           MEFGNDQLK   +W K+K  TEVEL AEVVKQLQ+I EL SRDRAKLMQILF SVEAIEG
Sbjct: 68  MEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFRSVEAIEG 127

Query: 61  F 62
           F
Sbjct: 128 F 128

[Close]

BLAST of MELO3C002985 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           +E+GN+QL  IA WP  +R    + R E+V+ L+ I EL   DR +LM+IL  +V+ ++ 
Sbjct: 577 IEYGNEQLHRIAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKA 636

Query: 61  FLSIPIELKLEYCNILLQ 79
           FL +P  +K  YC+++LQ
Sbjct: 637 FLEVPDHMKYPYCSLILQ 654

[Close]

BLAST of MELO3C002985 vs. TrEMBL
Match: A0A0A0LEB9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           M++ NDQ + I  WP  +  ++    AEV+KQLQ I EL + DR  LM  L  +V  ++ 
Sbjct: 26  MKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQAIPELSTHDRRCLMWTLMCNVHDMKA 85

Query: 61  FLSIPIELKLEYCNILLQN 80
              I  ELKL+YC ++L++
Sbjct: 86  LWEISNELKLDYCTVMLED 104

[Close]

BLAST of MELO3C002985 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 2   EFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEGF 61
           EFGNDQLKTI +WPKEKR TEVELR EVVKQLQ+I +L S+DRAKLMQILF SVEAIEGF
Sbjct: 184 EFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFRSVEAIEGF 243

Query: 62  LSIPIELKLEYCNILLQN 80
           LSIP +LKLEYCNILL+N
Sbjct: 244 LSIPTKLKLEYCNILLEN 261

[Close]

BLAST of MELO3C002985 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 3.6e-27
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           MEFGN+QLK IA+WPKEKR  EVE+RA+VVKQLQ+I +L S+DRAKLMQILF S+EAIEG
Sbjct: 226 MEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFRSLEAIEG 285

Query: 61  FLSIPIELKLEYCNILLQN 80
           FLSIP ELKLEYCNILLQN
Sbjct: 286 FLSIPTELKLEYCNILLQN 304

[Close]

BLAST of MELO3C002985 vs. NCBI nr
Match: gi|700191427|gb|KGN46631.1| (hypothetical protein Csa_6G116150 [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           ME  NDQLK IANW KEKR TEVEL  EVVKQLQ+I EL +RDR KLMQI+FH V+ IEG
Sbjct: 48  MEVRNDQLKAIANWSKEKRATEVELHVEVVKQLQDISELRTRDRVKLMQIIFHMVDDIEG 107

Query: 61  FLSIPIELKLEYCNILLQN 80
           FLS P +LKLEYC +LL++
Sbjct: 108 FLSCPTKLKLEYCRVLLED 126

[Close]

BLAST of MELO3C002985 vs. NCBI nr
Match: gi|307135888|gb|ADN33753.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           MEFGNDQLK   +W K+K  TEVEL AEVVKQLQ+I EL SRDRAKLMQILF SVEAIEG
Sbjct: 68  MEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFRSVEAIEG 127

Query: 61  F 62
           F
Sbjct: 128 F 128

[Close]

BLAST of MELO3C002985 vs. NCBI nr
Match: gi|659133698|ref|XP_008466863.1| (PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 1


Query: 1   MEFGNDQLKTIANWPKEKRVTEVELRAEVVKQLQNILELPSRDRAKLMQILFHSVEAIEG 60
           +E+GN+QL  IA WP  +R    + R E+V+QL+ I EL   DR +LM I+ H+++ ++ 
Sbjct: 429 IEYGNEQLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMHIIMHNIDDMKA 488

Query: 61  FLSIPIELKLEYCNILLQ 79
           FL +P  +K  YCNI+LQ
Sbjct: 489 FLEVPDNMKYSYCNIILQ 506

The following BLAST results are available for this feature:

BLAST of MELO3C002985 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFW0_CUCSA	8.4e-23	70.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G116150 PE=4 SV=1	[more]
E5GBB1_CUCME	1.2e-16	78.69	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCB5_CUCME	1.1e-09	41.03	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LEB9_CUCSA	1.9e-06	39.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G643760 PE=4 SV=1	[more]

BLAST of MELO3C002985 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113923\|ref\|XP_008456820.1\|	1.2e-27	83.33	PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	3.6e-27	81.01	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|700191427\|gb\|KGN46631.1\|	1.2e-22	70.89	hypothetical protein Csa_6G116150 [Cucumis sativus]	[more]
gi\|307135888\|gb\|ADN33753.1\|	1.7e-16	78.69	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|659133698\|ref\|XP_008466863.1\|	1.6e-11	43.59	PREDICTED: uncharacterized protein LOC103504172 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002985T1	MELO3C002985T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002985	Wax gourd	mewgoB028
MELO3C002985	Cucumber (Gy14) v1	cgymeB004
MELO3C002985	Cucurbita maxima (Rimu)	cmameB146
MELO3C002985	Cucurbita maxima (Rimu)	cmameB715
MELO3C002985	Cucurbita moschata (Rifu)	cmomeB136
MELO3C002985	Cucurbita moschata (Rifu)	cmomeB706
MELO3C002985	Wild cucumber (PI 183967)	cpimeB350
MELO3C002985	Cucumber (Chinese Long) v2	cumeB361
MELO3C002985	Watermelon (Charleston Gray)	mewcgB003
MELO3C002985	Watermelon (Charleston Gray)	mewcgB023
MELO3C002985	Watermelon (97103) v1	mewmB004
MELO3C002985	Cucurbita pepo (Zucchini)	cpemeB742
MELO3C002985	Bottle gourd (USVL1VR-Ls)	lsimeB164
MELO3C002985	Cucumber (Gy14) v2	cgybmeB300
MELO3C002985	Silver-seed gourd	carmeB0322
MELO3C002985	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002985	Watermelon (97103) v2	mewmbB039