MELO3C002977 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002977
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Toll-Interleukin-Resistance (TIR) domain-containing protein
Location	chr9 : 9102787 .. 9102987 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCAATTGCTGGAGCTAAGTCTGAAGCAGACCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCTGATGACAACAAACAAGATGACCCTGAAGGCATCATTAATCTCTCAGATTCATCTGGCAACGATATCGATTTTGCAAATGACCCTTATTACAATTTCGATATTTTTTATCCCTATTTGGATTCCTAA

mRNA sequence

ATGACGTCAATTGCTGGAGCTAAGTCTGAAGCAGACCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCTGATGACAACAAACAAGATGACCCTGAAGGCATCATTAATCTCTCAGATTCATCTGGCAACGATATCGATTTTGCAAATGACCCTTATTACAATTTCGATATTTTTTATCCCTATTTGGATTCCTAA

Coding sequence (CDS)

ATGACGTCAATTGCTGGAGCTAAGTCTGAAGCAGACCTCCAGGCAGTCATGGAAACAGTCGTCAACAATAATTCTGATGACAACAAACAAGATGACCCTGAAGGCATCATTAATCTCTCAGATTCATCTGGCAACGATATCGATTTTGCAAATGACCCTTATTACAATTTCGATATTTTTTATCCCTATTTGGATTCCTAA

Protein sequence

MTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEGIINLSDSSGNDIDFANDPYYNFDIFYPYLDS*

Homology

[Close]

BLAST of MELO3C002977 vs. TrEMBL
Match: A0A0A0KXT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-14
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 1   MTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEGIINLSDSSGNDIDFANDPYYNFDIF 60
           MT IAGAKSEADLQ VMETV++   DD+K++D E     S+S  NDIDF NDPYYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  YPYLDS 67
            PY DS
Sbjct: 134 DPYFDS 139

[Close]

BLAST of MELO3C002977 vs. NCBI nr
Match: gi|700198501|gb|KGN53659.1| (hypothetical protein Csa_4G097660 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.6e-14
Identity = 43/66 (65.15%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 1   MTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEGIINLSDSSGNDIDFANDPYYNFDIF 60
           MT IAGAKSEADLQ VMETV++   DD+K++D E     S+S  NDIDF NDPYYNFDI 
Sbjct: 74  MTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFANDIDFDNDPYYNFDIS 133

Query: 61  YPYLDS 67
            PY DS
Sbjct: 134 DPYFDS 139

The following BLAST results are available for this feature:

BLAST of MELO3C002977 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXT5_CUCSA	4.6e-14	65.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G097660 PE=4 SV=1	[more]

BLAST of MELO3C002977 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198501\|gb\|KGN53659.1\|	6.6e-14	65.15	hypothetical protein Csa_4G097660 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU52186	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002977T1	MELO3C002977T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU52186	MU52186	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002977	Wax gourd	mewgoB035
MELO3C002977	Cucumber (Gy14) v1	cgymeB004
MELO3C002977	Cucurbita maxima (Rimu)	cmameB146
MELO3C002977	Cucurbita maxima (Rimu)	cmameB715
MELO3C002977	Cucurbita moschata (Rifu)	cmomeB136
MELO3C002977	Cucurbita moschata (Rifu)	cmomeB706
MELO3C002977	Wild cucumber (PI 183967)	cpimeB350
MELO3C002977	Cucumber (Chinese Long) v2	cumeB361
MELO3C002977	Watermelon (Charleston Gray)	mewcgB003
MELO3C002977	Watermelon (97103) v1	mewmB004
MELO3C002977	Cucurbita pepo (Zucchini)	cpemeB742
MELO3C002977	Bottle gourd (USVL1VR-Ls)	lsimeB164
MELO3C002977	Cucumber (Gy14) v2	cgybmeB300
MELO3C002977	Silver-seed gourd	carmeB0322
MELO3C002977	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002977	Watermelon (97103) v2	mewmbB039