MELO3C002959 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C002959
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	50S ribosomal protein L1
Location	chr9 : 8709754 .. 8710769 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGCAAGCTTGGATTAACGCTTCAAGGTAGGTGTATACGTAGGGTGTTGCAGGATGAACCATTTGTTGAACACCCTAAGCTGACAGTAATCATTCTTCATTGTTATCATTTTAAATGGAGTAATGGGTCTTGGATTTTCAGATGGGAGCCTGACCCTGTAGAAGCTGATCCTTTGAAGGGTGGGAGGACTAGAAGGAAGGTTGACATACTTGGGATGCTAGTTAGCATAATTGGTTCGAAAGACCAACTAGTTAATGAGTATCGTGTCATGCTAGCAGAAAAACTTCTAAATAAGTCTGATTATGACATTGACTCAGAGATACGGACGCTAGAACTACTTAAGGTGTGCATTTTTTACCCTTCTTAACCACAACTAGCATATCACAAGAATAAGAAATTGGAAACTTTTCTGTGTTTTCATGTGTTCAAATTGTTTGTTTTATTATACCCTTGTCATTTTCAGATTCATTTTGGAGAAAGTAGCATGCAGAAGTGTGAAATTATGCTCAATGATCTAATTGATTCCAAGAGGACCAACTCTAATATTAAAGCAACAATAAACCTGCCATCTCAAACTGGTATGTCAAAGAAAAAACCTATGTTTTCTTTTTGAAATGACTCCCATCTGCCTATCTTACCTTAGTTATGTTGTAAGAAACAGGGGACGAGAGAGATTTTGAGCAATTGGGTTGGGTAAATTGGCATTTTAGGTGCTCCAGCCTCTAGTAGGAAATTTATTTTATTTAATAATTACTTACAACCTGAGAGGGTGAGTATGGTTAAATGAGGGTGGGAGATGAGATTGATATTAGATGTTCGAGAAAAAGGAGCTCCCAAGCTCTACTCGGTGAGGAAATGAAGATGATTTAGCAGGAGGGAATCATAATTAGAAAAAGTTTAGGAGAGAATTTCGGAAAGAGTTATGAGTTTTATAGATCTCAAGAACTTTGATATAAACTAAATGAATCAACAAAAAACTTAGTATTTCTCTTTAAAACCTCCTAAAAGATG

mRNA sequence

ATGACAAGCAAGCTTGGATTAACGCTTCAAGGTAGGTGTATACGTAGGGTGTTGCAGGATGAACCATTTGTTGAACACCCTAAGCTGACAGTAATCATTCTTCATTGTTATCATTTTAAATGGAGTAATGGGTCTTGGATTTTCAGATGGGAGCCTGACCCTGTAGAAGCTGATCCTTTGAAGGGTGGGAGGACTAGAAGGAAGGTTGACATACTTGGGATGCTAGTTAGCATAATTGGTTCGAAAGACCAACTAGTTAATGAGTATCGTGTCATGCTAGCAGAAAAACTTCTAAATAAGTCTGATTATGACATTGACTCAGAGATACGGACGCTAGAACTACTTAAGATTCATTTTGGAGAAAGTAGCATGCAGAAGTGTGAAATTATGCTCAATGATCTAATTGATTCCAAGAGGACCAACTCTAATATTAAAGCAACAATAAACCTGCCATCTCAAACTGGTATGTCAAAGAAAAAACCTATGTTTTCTTTTTGAAATGACTCCCATCTGCCTATCTTACCTTAGTTATGTTGTAAGAAACAGGGGACGAGAGAGATTTTGAGCAATTGGGTTGGGTAAATTGGCATTTTAGGTGCTCCAGCCTCTAGTAGGAAATTTATTTTATTTAATAATTACTTACAACCTGAGAGGGTGAGTATGGTTAAATGAGGGTGGGAGATGAGATTGATATTAGATGTTCGAGAAAAAGGAGCTCCCAAGCTCTACTCGGTGAGGAAATGAAGATGATTTAGCAGGAGGGAATCATAATTAGAAAAAGTTTAGGAGAGAATTTCGGAAAGAGTTATGAGTTTTATAGATCTCAAGAACTTTGATATAAACTAAATGAATCAACAAAAAACTTAGTATTTCTCTTTAAAACCTCCTAAAAGATG

Coding sequence (CDS)

ATGACAAGCAAGCTTGGATTAACGCTTCAAGGTAGGTGTATACGTAGGGTGTTGCAGGATGAACCATTTGTTGAACACCCTAAGCTGACAGTAATCATTCTTCATTGTTATCATTTTAAATGGAGTAATGGGTCTTGGATTTTCAGATGGGAGCCTGACCCTGTAGAAGCTGATCCTTTGAAGGGTGGGAGGACTAGAAGGAAGGTTGACATACTTGGGATGCTAGTTAGCATAATTGGTTCGAAAGACCAACTAGTTAATGAGTATCGTGTCATGCTAGCAGAAAAACTTCTAAATAAGTCTGATTATGACATTGACTCAGAGATACGGACGCTAGAACTACTTAAGATTCATTTTGGAGAAAGTAGCATGCAGAAGTGTGAAATTATGCTCAATGATCTAATTGATTCCAAGAGGACCAACTCTAATATTAAAGCAACAATAAACCTGCCATCTCAAACTGGTATGTCAAAGAAAAAACCTATGTTTTCTTTTTGA

Protein sequence

MTSKLGLTLQGRCIRRVLQDEPFVEHPKLTVIILHCYHFKWSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKKPMFSF*

Homology

[Close]

BLAST of MELO3C002959 vs. Swiss-Prot
Match: APC2_ARATH (Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-43
Identity = 91/115 (79.13%), Postives = 98/115 (85.22%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKG  ++RKVDILGMLV IIGSK+QLVNEYRVMLAEKLLNK
Sbjct: 512 WINAS---RWEPDPVEADPLKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNK 571

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           +DYDID+EIRT+ELLKIHFGE+SMQ+CEIMLNDLIDSKR N+NIK      SQTG
Sbjct: 572 TDYDIDTEIRTVELLKIHFGEASMQRCEIMLNDLIDSKRVNTNIKKA----SQTG 619

[Close]

BLAST of MELO3C002959 vs. Swiss-Prot
Match: ANC2_MOUSE (Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 3.5e-24
Identity = 51/96 (53.12%), Postives = 69/96 (71.88%), Query Frame = 1


Query: 50  WEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEI 109
           W PDPV+ADP+K    RR  DI+ +LVSI GSKD  +NEYR +LA++LL++  +  + EI
Sbjct: 495 WVPDPVDADPVKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREI 554

Query: 110 RTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIK 146
           R +ELLK+ FGE+ M  CE+ML D+ DS+R N+NI+
Sbjct: 555 RNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIR 590

[Close]

BLAST of MELO3C002959 vs. Swiss-Prot
Match: ANC2_HUMAN (Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 51/96 (53.12%), Postives = 68/96 (70.83%), Query Frame = 1


Query: 50  WEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEI 109
           W PDPV+ADP K    RR  DI+ +LVSI GSKD  +NEYR +LA++LL++  +  + EI
Sbjct: 480 WVPDPVDADPGKSSSKRRSSDIISLLVSIYGSKDLFINEYRSLLADRLLHQFSFSPEREI 539

Query: 110 RTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIK 146
           R +ELLK+ FGE+ M  CE+ML D+ DS+R N+NI+
Sbjct: 540 RNVELLKLRFGEAPMHFCEVMLKDMADSRRINANIR 575

[Close]

BLAST of MELO3C002959 vs. Swiss-Prot
Match: APC2_DICDI (Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum GN=anapc2 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 64  RTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESS 123
           + ++K D +  LV+I    D  +NEYR ML+++LL+  D+D+D EI+ +ELLK+ FG+S 
Sbjct: 554 KKKKKKDTISHLVNIYDGIDLFINEYRSMLSDRLLSVVDFDLDKEIKNIELLKLRFGDSV 613

Query: 124 MQKCEIMLNDLIDSKRTNSNIK 146
           +  CEIM+ D++DSKR N  IK
Sbjct: 614 LFNCEIMIKDMVDSKRLNLQIK 635

[Close]

BLAST of MELO3C002959 vs. Swiss-Prot
Match: ANC2_CAEEL (Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans GN=apc-2 PE=1 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 1


Query: 7   LTLQGRCIRRVLQDEPFVEHPKLTVIILHCYHFKWSNGSWIFRWEPDPVEADPLKGGRTR 66
           ++LQ + +R  + DE  ++      +  +     W N      W P+P +A    G    
Sbjct: 343 MSLQSKTVRSAMMDEEELKGVNDDFLPENMETLGWEN------WMPNPTDATVGDGAPGH 402

Query: 67  RKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSMQK 126
           + VD+  MLVS+ GSK+  V EYR +LAE+L +  + D + E R L+LLK+ F  S +Q 
Sbjct: 403 QGVDVFNMLVSVYGSKELFVKEYRNLLAERLSSSDNKDPEFEKRYLDLLKLRFQYSELQH 462

Query: 127 CEIMLNDLIDS 138
           CE+ML D+I S
Sbjct: 463 CEVMLRDVIHS 467

[Close]

BLAST of MELO3C002959 vs. TrEMBL
Match: A0A0A0KNJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G471070 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.2e-59
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 524 WINAS---RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 583

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 160
           SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK
Sbjct: 584 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 643

Query: 161 PMFSF 166
           PMFSF
Sbjct: 644 PMFSF 645

[Close]

BLAST of MELO3C002959 vs. TrEMBL
Match: D7TN60_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02730 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.1e-47
Identity = 100/115 (86.96%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N     RWEPDPVEADP KG R RRKVDILGM+V IIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 521 WINAE---RWEPDPVEADPSKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNK 580

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           SDYDIDSEIRTLELLKIHFGESSMQ+CEIMLNDLIDSKRTNSNIKATI  PSQ G
Sbjct: 581 SDYDIDSEIRTLELLKIHFGESSMQRCEIMLNDLIDSKRTNSNIKATITQPSQIG 632

[Close]

BLAST of MELO3C002959 vs. TrEMBL
Match: A0A0B0PSQ7_GOSAR (Anaphase-promoting complex subunit 2-like protein OS=Gossypium arboreum GN=F383_13249 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 99/112 (88.39%), Postives = 102/112 (91.07%), Query Frame = 1


Query: 49  RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSE 108
           RWEPDPVEADPLKG R RRKVDILGM+V IIGSKDQLVNEYRVMLAEKLLNKSDYDIDSE
Sbjct: 524 RWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSDYDIDSE 583

Query: 109 IRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 161
           IRTLELLKIHFGESSMQKCEIMLNDLIDSKRTN+NIKATI+  SQ G    K
Sbjct: 584 IRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNTNIKATISNTSQIGQCLSK 635

[Close]

BLAST of MELO3C002959 vs. TrEMBL
Match: M5XLY4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001230mg PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-47
Identity = 100/115 (86.96%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKG R RRKVDILGM+V IIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 513 WINAS---RWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNK 572

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           SDYDID+EIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTN NIKATI   SQ G
Sbjct: 573 SDYDIDTEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNGNIKATITQTSQAG 624

[Close]

BLAST of MELO3C002959 vs. TrEMBL
Match: A0A103XRP9_CYNCS (Anaphase-promoting complex subunit 2, C-terminal (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_002317 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.5e-47
Identity = 96/119 (80.67%), Postives = 107/119 (89.92%), Query Frame = 1


Query: 47  IFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSDYDID 106
           +F WEPDPVEADPLKG R RRKVD+LGM+V IIGSKDQLVNEYRVMLAEKLLNK+DYDID
Sbjct: 550 LFSWEPDPVEADPLKGSRYRRKVDVLGMIVGIIGSKDQLVNEYRVMLAEKLLNKTDYDID 609

Query: 107 SEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKKPMFSF 166
           +EIRTLELLKIHFGE+SMQKCEIMLNDLIDSKRTN+N+KATIN  +QTG   ++   SF
Sbjct: 610 TEIRTLELLKIHFGENSMQKCEIMLNDLIDSKRTNTNVKATINQLAQTGAESQEHEASF 668

[Close]

BLAST of MELO3C002959 vs. TAIR10
Match: AT2G04660.1 (AT2G04660.1 anaphase-promoting complex/cyclosome 2)

HSP 1 Score: 177.6 bits (449), Expect = 6.5e-45
Identity = 91/115 (79.13%), Postives = 98/115 (85.22%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKG  ++RKVDILGMLV IIGSK+QLVNEYRVMLAEKLLNK
Sbjct: 512 WINAS---RWEPDPVEADPLKGSLSQRKVDILGMLVDIIGSKEQLVNEYRVMLAEKLLNK 571

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           +DYDID+EIRT+ELLKIHFGE+SMQ+CEIMLNDLIDSKR N+NIK      SQTG
Sbjct: 572 TDYDIDTEIRTVELLKIHFGEASMQRCEIMLNDLIDSKRVNTNIKKA----SQTG 619

[Close]

BLAST of MELO3C002959 vs. NCBI nr
Match: gi|700195991|gb|KGN51168.1| (hypothetical protein Csa_5G471070 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 7.5e-59
Identity = 120/125 (96.00%), Postives = 120/125 (96.00%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 524 WINAS---RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 583

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 160
           SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK
Sbjct: 584 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 643

Query: 161 PMFSF 166
           PMFSF
Sbjct: 644 PMFSF 645

[Close]

BLAST of MELO3C002959 vs. NCBI nr
Match: gi|778702946|ref|XP_011655285.1| (PREDICTED: anaphase-promoting complex subunit 2 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.6e-53
Identity = 111/124 (89.52%), Postives = 114/124 (91.94%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 524 WINAS---RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 583

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 160
           SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQT +  K+
Sbjct: 584 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTAVDLKE 643

Query: 161 PMFS 165
            + S
Sbjct: 644 SVIS 644

[Close]

BLAST of MELO3C002959 vs. NCBI nr
Match: gi|659131539|ref|XP_008465737.1| (PREDICTED: anaphase-promoting complex subunit 2 [Cucumis melo])

HSP 1 Score: 216.5 bits (550), Expect = 3.6e-53
Identity = 111/124 (89.52%), Postives = 114/124 (91.94%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N S   RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 524 WINAS---RWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 583

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTGMSKKK 160
           SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQT +  K+
Sbjct: 584 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTAVDLKE 643

Query: 161 PMFS 165
            + S
Sbjct: 644 SVIS 644

[Close]

BLAST of MELO3C002959 vs. NCBI nr
Match: gi|658009334|ref|XP_008339875.1| (PREDICTED: anaphase-promoting complex subunit 2 [Malus domestica])

HSP 1 Score: 200.3 bits (508), Expect = 2.7e-48
Identity = 101/113 (89.38%), Postives = 105/113 (92.92%), Query Frame = 1


Query: 45  SWI--FRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNKSD 104
           +WI   RWEPDPVEADPLKG R RRKVDILGM+V IIGSKDQLVNEYRVMLAEKLLNKSD
Sbjct: 508 AWINALRWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNKSD 567

Query: 105 YDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           YDID+EIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATI+ PSQ G
Sbjct: 568 YDIDTEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATISQPSQMG 620

[Close]

BLAST of MELO3C002959 vs. NCBI nr
Match: gi|1009154218|ref|XP_015895049.1| (PREDICTED: anaphase-promoting complex subunit 2 [Ziziphus jujuba])

HSP 1 Score: 198.0 bits (502), Expect = 1.3e-47
Identity = 99/115 (86.09%), Postives = 103/115 (89.57%), Query Frame = 1


Query: 41  WSNGSWIFRWEPDPVEADPLKGGRTRRKVDILGMLVSIIGSKDQLVNEYRVMLAEKLLNK 100
           W N      WEPDPVEADPLKG R RRKVDILGM+V IIGSKDQLVNEYRVMLAEKLLNK
Sbjct: 516 WINAQ---HWEPDPVEADPLKGSRNRRKVDILGMIVGIIGSKDQLVNEYRVMLAEKLLNK 575

Query: 101 SDYDIDSEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNSNIKATINLPSQTG 156
           SDYDID+EIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTN+N+KATIN PSQ G
Sbjct: 576 SDYDIDTEIRTLELLKIHFGESSMQKCEIMLNDLIDSKRTNTNVKATINQPSQRG 627

The following BLAST results are available for this feature:

BLAST of MELO3C002959 vs. Swiss-Prot


Match Name	E-value	Identity	Description
APC2_ARATH	1.2e-43	79.13	Anaphase-promoting complex subunit 2 OS=Arabidopsis thaliana GN=APC2 PE=1 SV=1	[more]
ANC2_MOUSE	3.5e-24	53.13	Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1 SV=2	[more]
ANC2_HUMAN	1.3e-23	53.13	Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1 SV=1	[more]
APC2_DICDI	1.3e-15	46.34	Anaphase-promoting complex subunit 2 OS=Dictyostelium discoideum GN=anapc2 PE=3 ...	[more]
ANC2_CAEEL	1.1e-14	35.11	Anaphase-promoting complex subunit 2 OS=Caenorhabditis elegans GN=apc-2 PE=1 SV=...	[more]

BLAST of MELO3C002959 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNJ3_CUCSA	5.2e-59	96.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G471070 PE=4 SV=1	[more]
D7TN60_VITVI	2.1e-47	86.96	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02730 PE=3 SV=...	[more]
A0A0B0PSQ7_GOSAR	2.7e-47	88.39	Anaphase-promoting complex subunit 2-like protein OS=Gossypium arboreum GN=F383_...	[more]
M5XLY4_PRUPE	2.7e-47	86.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001230mg PE=3 SV=1	[more]
A0A103XRP9_CYNCS	3.5e-47	80.67	Anaphase-promoting complex subunit 2, C-terminal (Fragment) OS=Cynara cardunculu...	[more]

BLAST of MELO3C002959 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04660.1	6.5e-45	79.13	anaphase-promoting complex/cyclosome 2	[more]

BLAST of MELO3C002959 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195991\|gb\|KGN51168.1\|	7.5e-59	96.00	hypothetical protein Csa_5G471070 [Cucumis sativus]	[more]
gi\|778702946\|ref\|XP_011655285.1\|	3.6e-53	89.52	PREDICTED: anaphase-promoting complex subunit 2 [Cucumis sativus]	[more]
gi\|659131539\|ref\|XP_008465737.1\|	3.6e-53	89.52	PREDICTED: anaphase-promoting complex subunit 2 [Cucumis melo]	[more]
gi\|658009334\|ref\|XP_008339875.1\|	2.7e-48	89.38	PREDICTED: anaphase-promoting complex subunit 2 [Malus domestica]	[more]
gi\|1009154218\|ref\|XP_015895049.1\|	1.3e-47	86.09	PREDICTED: anaphase-promoting complex subunit 2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001373	Cullin_N
IPR016158	Cullin_homology

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0031625	ubiquitin protein ligase binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0007276	gamete generation
biological_process	GO:0009561	megagametogenesis
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0051302	regulation of cell division
biological_process	GO:0032875	regulation of DNA endoreduplication
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0009616	virus induced gene silencing
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005819	spindle
molecular_function	GO:0031625	ubiquitin protein ligase binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002959T1	MELO3C002959T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001373	Cullin, N-terminal	PFAM	PF00888	Cullin	coord: 67..146 score: 9.
IPR016158	Cullin homology	PROFILE	PS50069	CULLIN_2	coord: 74..165 score: 9
IPR016158	Cullin homology	unknown	SSF75632	Cullin homology domain	coord: 50..151 score: 1.44
None	No IPR available	GENE3D	G3DSA:1.20.1310.10		coord: 66..148 score: 2.
None	No IPR available	PANTHER	PTHR11932	CULLIN	coord: 49..149 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C002959	Silver-seed gourd	carmeB0322
MELO3C002959	Cucumber (Chinese Long) v3	cucmeB359
MELO3C002959	Watermelon (97103) v2	mewmbB039
MELO3C002959	Watermelon (97103) v2	mewmbB040
MELO3C002959	Wax gourd	mewgoB023
MELO3C002959	Wax gourd	mewgoB035
MELO3C002959	Cucumber (Gy14) v1	cgymeB004
MELO3C002959	Cucurbita maxima (Rimu)	cmameB146
MELO3C002959	Cucurbita maxima (Rimu)	cmameB715
MELO3C002959	Cucurbita maxima (Rimu)	cmameB716
MELO3C002959	Cucurbita moschata (Rifu)	cmomeB136
MELO3C002959	Cucurbita moschata (Rifu)	cmomeB706
MELO3C002959	Wild cucumber (PI 183967)	cpimeB350
MELO3C002959	Cucumber (Chinese Long) v2	cumeB361
MELO3C002959	Watermelon (Charleston Gray)	mewcgB003
MELO3C002959	Watermelon (Charleston Gray)	mewcgB004
MELO3C002959	Watermelon (97103) v1	mewmB004
MELO3C002959	Watermelon (97103) v1	mewmB005
MELO3C002959	Cucurbita pepo (Zucchini)	cpemeB742
MELO3C002959	Bottle gourd (USVL1VR-Ls)	lsimeB162
MELO3C002959	Bottle gourd (USVL1VR-Ls)	lsimeB164
MELO3C002959	Cucumber (Gy14) v2	cgybmeB300